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Editorial.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W1, doi. 10.1093/nar/gkm484
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DEEP—A tool for differential expression effector prediction.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W619, doi. 10.1093/nar/gkm469
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Conducting Research on the Web: 2007 Update for the Bioinformatics Links Directory.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W3, doi. 10.1093/nar/gkm459
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SAGExplore: a web server for unambiguous tag mapping in serial analysis of gene expression oriented to gene discovery and annotation.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W163, doi. 10.1093/nar/gkm429
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oPOSSUM: integrated tools for analysis of regulatory motif over-representation.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W245, doi. 10.1093/nar/gkm427
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FGF: A web tool for Fishing Gene Family in a whole genome database.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W121, doi. 10.1093/nar/gkm426
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PIC: Protein Interactions Calculator.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W473, doi. 10.1093/nar/gkm423
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siteFiNDER|3D: a web-based tool for predicting the location of functional sites in proteins.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W489, doi. 10.1093/nar/gkm422
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DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W169, doi. 10.1093/nar/gkm415
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Cross-species microarray analysis with the OSCAR system suggests an INSR->Pax6->NQO1 neuro-protective pathway in aging and Alzheimer's disease.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W105
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SplicePort—An interactive splice-site analysis tool.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W285, doi. 10.1093/nar/gkm407
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Sequence harmony: detecting functional specificity from alignments.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W495, doi. 10.1093/nar/gkm406
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CanPredict: a computational tool for predicting cancer-associated missense mutations.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W595, doi. 10.1093/nar/gkm405
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Patch Finder Plus (PFplus): A web server for extracting and displaying positive electrostatic patches on protein surfaces.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W526, doi. 10.1093/nar/gkm401
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The SLiMDisc server: short, linear motif discovery in proteins.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W455, doi. 10.1093/nar/gkm400
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TFAM 1.0: an online tRNA function classifier.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W350, doi. 10.1093/nar/gkm393
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CodonO: codon usage bias analysis within and across genomes.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W132, doi. 10.1093/nar/gkm392
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CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W345, doi. 10.1093/nar/gkm391
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DOMAC: an accurate, hybrid protein domain prediction server.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W354, doi. 10.1093/nar/gkm390
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REPK: an analytical web server to select restriction endonucleases for terminal restriction fragment length polymorphism analysis.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W58, doi. 10.1093/nar/gkm384
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PrimerZ: streamlined primer design for promoters, exons and human SNPs.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W63, doi. 10.1093/nar/gkm383
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Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W506, doi. 10.1093/nar/gkm382
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GeneHub-GEPIS: digital expression profiling for normal and cancer tissues based on an integrated gene database.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W152, doi. 10.1093/nar/gkm381
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MobilomeFINDER: web-based tools for in silico and experimental discovery of bacterial genomic islands.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W97
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MYBS: a comprehensive web server for mining transcription factor binding sites in yeast.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W221, doi. 10.1093/nar/gkm379
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ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W143, doi. 10.1093/nar/gkm378
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WebMOTIFS: automated discovery, filtering and scoring of DNA sequence motifs using multiple programs and Bayesian approaches.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W217, doi. 10.1093/nar/gkm376
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ProSight PTM 2.0: improved protein identification and characterization for top down mass spectrometry.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W701, doi. 10.1093/nar/gkm371
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EVALLER: a web server for in silico assessment of potential protein allergenicity.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W694, doi. 10.1093/nar/gkm370
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ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W159, doi. 10.1093/nar/gkm369
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MiPred: classification of real and pseudo microRNA precursors using random forest prediction model with combined features.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W339, doi. 10.1093/nar/gkm368
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FRalanyzer: a tool for functional analysis of fold-recognition sequence–structure alignments.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W499, doi. 10.1093/nar/gkm367
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FluGenome: a web tool for genotyping influenza A virus.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W275
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ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W444, doi. 10.1093/nar/gkm364
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PrDOS: prediction of disordered protein regions from amino acid sequence.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W460, doi. 10.1093/nar/gkm363
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Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W227, doi. 10.1093/nar/gkm362
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RSRE: RNA structural robustness evaluator.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W314, doi. 10.1093/nar/gkm361
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CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W52, doi. 10.1093/nar/gkm360
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MultiPhyl: a high-throughput phylogenomics webserver using distributed computing.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W33, doi. 10.1093/nar/gkm359
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FLAN: a web server for influenza virus genome annotation.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W280, doi. 10.1093/nar/gkm354
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iPDA: integrated protein disorder analyzer.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W465
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MyHits: improvements to an interactive resource for analyzing protein sequences.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W433, doi. 10.1093/nar/gkm352
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eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W398, doi. 10.1093/nar/gkm351
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INDELSCAN: a web server for comparative identification of species-specific and non-species-specific insertion/deletion events.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W633, doi. 10.1093/nar/gkm350
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Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design tool.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W599, doi. 10.1093/nar/gkm349
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3D-partner: a web server to infer interacting partners and binding models.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W561, doi. 10.1093/nar/gkm346
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The Multi-Q web server for multiplexed protein quantitation.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W707
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BIPASS: BioInformatics Pipeline Alternative Splicing Services.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W292, doi. 10.1093/nar/gkm344
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MADAP, a flexible clustering tool for the interpretation of one-dimensional genome annotation data.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W201, doi. 10.1093/nar/gkm343
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The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W531, doi. 10.1093/nar/gkm328
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