Works matching IS 03051048 AND DT 2007 AND VI 35 AND IP 9

Results: 40

Mechanism for the TtDnaA–Tt-oriC cooperative interaction at high temperature and duplex opening at an unusual AT-rich region in Thermoanaerobacter tengcongensis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3087, doi. 10.1093/nar/gkm137

By:

Pei, Huadong;
Liu, Jingfang;
Li, Jie;
Guo, Aobo;
Zhou, Jian;
Xiang, Hua

Publication type:

Article

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3100, doi. 10.1093/nar/gkm160

By:

Lagesen, Karin;
Hallin, Peter;
Rødland, Einar Andreas;
Stærfeldt, Hans-Henrik;
Rognes, Torbjørn;
Ussery, David W.

Publication type:

Article

Identification of conserved secondary structures and expansion segments in enod40 RNAs reveals new enod40 homologues in plants.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3144, doi. 10.1093/nar/gkm173

By:

Gultyaev, Alexander P.;
Roussis, Andreas

Publication type:

Article

Actin-related protein Arp4 functions in kinetochore assembly.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3109, doi. 10.1093/nar/gkm161

By:

Ogiwara, Hideaki;
Ui, Ayako;
Kawashima, Satoshi;
Kugou, Kazuto;
Onoda, Fumitoshi;
Iwahashi, Hitoshi;
Harata, Masahiko;
Ohta, Kunihiro;
Enomoto, Takemi;
Seki, Masayuki

Publication type:

Article

Recovery of bisulfite-converted genomic sequences in the methylation-sensitive QPCR.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2893, doi. 10.1093/nar/gkm055

By:

Munson, Kristofer;
Clark, Jarrod;
Lamparska-Kupsik, Katarzyna;
Smith, Steven S.

Publication type:

Article

The 1.4-Å crystal structure of the S. pombe Pop2p deadenylase subunit unveils the configuration of an active enzyme.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3153, doi. 10.1093/nar/gkm178

By:

Jonstrup, Anette Thyssen;
Andersen, Kasper R.;
Van, Lan B.;
Brodersen, Ditlev E.

Publication type:

Article

A hybrid CMV-H1 construct improves efficiency of PEI-delivered shRNA in the mouse brain.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e65, doi. 10.1093/nar/gkm152

By:

Hassani, Zahra;
François, Jean-Christophe;
Alfama, Gladys;
Dubois, Ghislaine Morvan;
Paris, Mathilde;
Giovannangeli, Carine;
Demeneix, Barbara A.

Publication type:

Article

Specificity, duplex degradation and subcellular localization of antagomirs.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2885, doi. 10.1093/nar/gkm024

By:

Krützfeldt, Jan;
Kuwajima, Satoru;
Braich, Ravi;
Rajeev, Kallanthottathil G.;
Pena, John;
Tuschl, Thomas;
Manoharan, Muthiah;
Stoffel, Markus

Publication type:

Article

Thermodynamics and kinetics for base-pair opening in the P1 duplex of the Tetrahymena group I ribozyme.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2965, doi. 10.1093/nar/gkm184

By:

Lee, Joon-Hwa;
Pardi, Arthur

Publication type:

Article

Solution structure of Domains IVa and V of the τ subunit of Escherichia coli DNA polymerase III and interaction with the α subunit.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2825, doi. 10.1093/nar/gkm080

By:

Su, Xun-Cheng;
Jergic, Slobodan;
Keniry, Max A.;
Dixon, Nicholas E.;
Otting, Gottfried

Publication type:

Article

The open state of human topoisomerase I as probed by molecular dynamics simulation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3032, doi. 10.1093/nar/gkm199

By:

Chillemi, Giovanni;
Bruselles, Alessandro;
Fiorani, Paola;
Bueno, Susana;
Desideri, Alessandro

Publication type:

Article

An in vitro selection scheme for oligonucleotide probes to discriminate between closely related DNA sequences.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e66, doi. 10.1093/nar/gkm156

By:

Brukner, Ivan;
El-Ramahi, Razan;
Gorska-Flipot, Izabella;
Krajinovic, Maja;
Labuda, Damian

Publication type:

Article

Escherichia coli ribosomal protein L20 binds as a single monomer to its own mRNA bearing two potential binding sites.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3016, doi. 10.1093/nar/gkm197

By:

Allemand, F.;
Haentjens, J.;
Chiaruttini, C.;
Royer, C.;
Springer, M.

Publication type:

Article

Comparison of RNAi efficiency mediated by tetracycline-responsive H1 and U6 promoter variants in mammalian cell lines.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e67, doi. 10.1093/nar/gkm193

By:

Henriksen, Jørn R.;
Løkke, Cecilie;
Hammerø, Martin;
Geerts, Dirk;
Versteeg, Rogier;
Flægstad, Trond;
Einvik, Christer

Publication type:

Article

An adaptation of the LMS method to determine expression variations in profiling data.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e71, doi. 10.1093/nar/gkm093

By:

Chuchana, Paul;
Marchand, Dorian;
Nugoli, Mélanie;
Rodriguez, Carmen;
Molinari, Nicolas;
Garcia-Sanz, Jose A.

Publication type:

Article

Recruitment of DNA repair synthesis machinery to sites of DNA damage/repair in living human cells.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2913, doi. 10.1093/nar/gkm115

By:

Hashiguchi, Kazunari;
Matsumoto, Yoshihiro;
Yasui, Akira

Publication type:

Article

Use of a novel Förster resonance energy transfer method to identify locations of site-bound metal ions in the U2–U6 snRNA complex.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2833, doi. 10.1093/nar/gkm134

By:

Yuan, Faqing;
Griffin, Laura;
Phelps, LauraJane;
Buschmann, Volker;
Weston, Kenneth;
Greenbaum, Nancy L.

Publication type:

Article

CAF1 plays an important role in mRNA deadenylation separate from its contact to CCR4.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3002, doi. 10.1093/nar/gkm196

By:

Ohn, Takbum;
Chiang, Yueh-Chin;
Lee, Darren J.;
Yao, Gang;
Zhang, Chongxu;
Denis, Clyde L.

Publication type:

Article

Guanines are a quartet's best friend: impact of base substitutions on the kinetics and stability of tetramolecular quadruplexes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3064, doi. 10.1093/nar/gkm111

By:

Gros, Julien;
Rosu, Frédéric;
Amrane, Samir;
De Cian, Anne;
Gabelica, Valérie;
Lacroix, Laurent;
Mergny, Jean-Louis

Publication type:

Article

RNA polymerase III transcription is repressed in response to the tumour suppressor ARF.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3046, doi. 10.1093/nar/gkm208

By:

Morton, Jennifer P.;
Kantidakis, Theodoros;
White, Robert J.

Publication type:

Article

DNA modification by sulfur: analysis of the sequence recognition specificity surrounding the modification sites.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2944, doi. 10.1093/nar/gkm176

By:

Liang, Jingdan;
Wang, Zhijun;
He, Xinyi;
Li, Jialiang;
Zhou, Xiufen;
Deng, Zixin

Publication type:

Article

Error-pooling-based statistical methods for identifying novel temporal replication profiles of human chromosomes observed by DNA tiling arrays.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e69, doi. 10.1093/nar/gkm130

By:

Park, Taesung;
Kim, Youngchul;
Bekiranov, Stefan;
Lee, Jae K.

Publication type:

Article

The domain structure of Helicobacter pylori DnaB helicase: the N-terminal domain can be dispensable for helicase activity whereas the extreme C-terminal region is essential for its function.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2861, doi. 10.1093/nar/gkm167

By:

Nitharwal, Ram Gopal;
Paul, Subhankar;
Dar, Ashraf;
Choudhury, Nirupam Roy;
Soni, Rajesh K;
Prusty, Dhaneswar;
Sinha, Sukrat;
Kashav, Tara;
Mukhopadhyay, Gauranga;
Chaudhuri, Tapan Kumar;
Gourinath, Samudrala;
Dhar, Suman Kumar

Publication type:

Article

Sequence analysis of p53 response-elements suggests multiple binding modes of the p53 tetramer to DNA targets.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2986, doi. 10.1093/nar/gkm192

By:

Ma, Buyong;
Pan, Yongping;
Zheng, Jie;
Levine, Arnold J.;
Nussinov, Ruth

Publication type:

Article

All APOBEC3 family proteins differentially inhibit LINE-1 retrotransposition.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2955, doi. 10.1093/nar/gkm181

By:

Kinomoto, Masanobu;
Kanno, Takayuki;
Shimura, Mari;
Ishizaka, Yukihito;
Kojima, Asato;
Kurata, Takeshi;
Sata, Tetsutaro;
Tokunaga, Kenzo

Publication type:

Article

Regulation of B family DNA polymerase fidelity by a conserved active site residue: characterization of M644W, M644L and M644F mutants of yeast DNA polymerase ε.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3076, doi. 10.1093/nar/gkm132

By:

Pursell, Zachary F.;
Isoz, Isabelle;
Lundström, Else-Britt;
Johansson, Erik;
Kunkel, Thomas A.

Publication type:

Article

Base-specific spin-labeling of RNA for structure determination.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3128, doi. 10.1093/nar/gkm169

By:

Piton, Nelly;
Mu, Yuguang;
Stock, Gerhard;
Prisner, Thomas F.;
Schiemann, Olav;
Engels, Joachim W.

Publication type:

Article

Solution structure and dynamics of DNA duplexes containing the universal base analogues 5-nitroindole and 5-nitroindole 3-carboxamide.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2904, doi. 10.1093/nar/gkm074

By:

Gallego, José;
Loakes, David

Publication type:

Article

Complex translational regulation of BACE1 involves upstream AUGs and stimulatory elements within the 5′ untranslated region.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2975, doi. 10.1093/nar/gkm191

By:

Mihailovich, Marija;
Thermann, Rolf;
Grohovaz, Fabio;
Hentze, Matthias W.;
Zacchetti, Daniele

Publication type:

Article

The unstructured C-terminus of the τ subunit of Escherichia coli DNA polymerase III holoenzyme is the site of interaction with the α subunit.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2813, doi. 10.1093/nar/gkm079

By:

Jergic, Slobodan;
Ozawa, Kiyoshi;
Williams, Neal K.;
Su, Xun-Cheng;
Scott, Daniel D.;
Hamdan, Samir M.;
Crowther, Jeffrey A.;
Otting, Gottfried;
Dixon, Nicholas E.

Publication type:

Article

Revision of the nonequilibrium thermal dissociation and stringent washing approaches for identification of mixed nucleic acid targets by microarrays.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e70, doi. 10.1093/nar/gkm154

By:

Pozhitkov, Alex E.;
Stedtfeld, Robert D.;
Hashsham, Syed A.;
Noble, Peter A.

Publication type:

Article

Influence of secondary structure on kinetics and reaction mechanism of DNA hybridization.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2875, doi. 10.1093/nar/gkm177

By:

Chen, Chunlai;
Wang, Wenjuan;
Wang, Zhang;
Wei, Fang;
Zhao, Xin Sheng

Publication type:

Article

Mitochondrial diversity within modern human populations.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3039, doi. 10.1093/nar/gkm207

By:

Carter, Robert W.

Publication type:

Article

Investigation of spectral conversion of d(TTAGGG)4 and d(TTAGGG)13 upon potassium titration by a G-quadruplex recognizer BMVC molecule.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2846, doi. 10.1093/nar/gkm155

By:

Chang, Cheng-Chung;
Chien, Chih-Wei;
Lin, Yi-Hsueh;
Kang, Chi-Chih;
Chang, Ta-Chau

Publication type:

Article

An exonuclease I hydrolysis assay for evaluating G-quadruplex stabilization by small molecules.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. e68, doi. 10.1093/nar/gkm194

By:

Yao, Yuan;
Wang, Quan;
Hao, Yu-hua;
Tan, Zheng

Publication type:

Article

Nucleoside alpha-thiotriphosphates, polymerases and the exonuclease III analysis of oligonucleotides containing phosphorothioate linkages.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3118, doi. 10.1093/nar/gkm168

By:

Yang, Zunyi;
Sismour, A. Michael;
Benner, Steven A.

Publication type:

Article

Loop II of DNA polymerase beta is important for polymerization activity and fidelity.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2924, doi. 10.1093/nar/gkm126

By:

Lin, George C.;
Jaeger, Joachim;
Sweasy, Joann B.

Publication type:

Article

Mapping translocation breakpoints using a wheat microarray.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 2936, doi. 10.1093/nar/gkm148

By:

Bhat, Prasanna R.;
Lukaszewski, Adam;
Cui, Xinping;
Xu, Jin;
Svensson, Jan T.;
Wanamaker, Steve;
Waines, J. Giles;
Close, Timothy J.

Publication type:

Article

Domain swapping between FEN-1 and XPG defines regions in XPG that mediate nucleotide excision repair activity and substrate specificity.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3053, doi. 10.1093/nar/gkm092

By:

Hohl, Marcel;
Dunand-Sauthier, Isabelle;
Staresincic, Lidija;
Jaquier-Gubler, Pascale;
Thorel, Fabrizio;
Modesti, Mauro;
Clarkson, Stuart G.;
Schärer, Orlando D.

Publication type:

Article

An efficient method for multi-locus molecular haplotyping.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 9, p. 3165, doi. 10.1093/nar/gkm185

By:

Konfortov, Bernard A.;
Bankier, Alan T.;
Dear, Paul H.

Publication type:

Article