Works matching IS 03051048 AND DT 2007 AND VI 35 AND IP 7

Results: 41

Identification of putative transcriptional regulatory networks in Entamoeba histolytica using Bayesian inference.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2141, doi. 10.1093/nar/gkm028

By:

Hackney, Jason A.;
Ehrenkaufer, Gretchen M.;
Singh, Upinder

Publication type:

Article

Regulation of histone H3K4 tri-methylation and PAF complex recruitment by the Ccr4-Not complex.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2428, doi. 10.1093/nar/gkm175

By:

Mulder, Klaas W.;
Brenkman, Arjan B.;
Inagaki, Akiko;
van den Broek, Niels J. F.;
Marc Timmers, H. Th.

Publication type:

Article

RNase T1 mimicking artificial ribonuclease.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2356, doi. 10.1093/nar/gkm143

By:

Mironova, N. L.;
Pyshnyi, D. V.;
Shtadler, D. V.;
Fedorova, A. A.;
Vlassov, V. V.;
Zenkova, M. A.

Publication type:

Article

Distance constraints between microRNA target sites dictate efficacy and cooperativity.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2333

By:

Sætrom, Pål;
Heale, Bret S.E.;
Snøve, Ola;
Aagaard, Lars;
Alluin, Jessica;
Rossi, John J.

Publication type:

Article

Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2153, doi. 10.1093/nar/gkm068

By:

Quatrini, Raquel;
Lefimil, Claudia;
Veloso, Felipe A.;
Pedroso, Inti;
Holmes, David S.;
Jedlicki, Eugenia

Publication type:

Article

Improving comparability between microarray probe signals by thermodynamic intensity correction.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e48, doi. 10.1093/nar/gkl1098

By:

Bruun, Georg M.;
Wernersson, Rasmus;
Juncker, Agnieszka S.;
Willenbrock, Hanni;
Nielsen, Henrik Bjørn

Publication type:

Article

Dynamic binding of Ku80, Ku70 and NF90 to the IL-2 promoter in vivo in activated T-cells.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2302, doi. 10.1093/nar/gkm117

By:

Shi, Lingfang;
Qiu, Daoming;
Zhao, Guohua;
Corthesy, Blaise;
Lees-Miller, Susan;
Reeves, Westley H.;
Kao, Peter N.

Publication type:

Article

Formation of 8-oxo-7,8-dihydroguanine-radicals in γ-irradiated DNA by multiple one-electron oxidations.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2460, doi. 10.1093/nar/gkm083

By:

Shukla, Lata I.;
Adhikary, Amitava;
Pazdro, Robert;
Becker, David;
Sevilla, Michael D.

Publication type:

Article

Consensus sequences improve PSI-BLAST through mimicking profile–profile alignments.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2238, doi. 10.1093/nar/gkm107

By:

Przybylski, Dariusz;
Rost, Burkhard

Publication type:

Article

The C-terminal domain of the Escherichia coli RNA polymerase α subunit plays a role in the CI-dependent activation of the bacteriophage λ pM promoter.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2311, doi. 10.1093/nar/gkm123

By:

Kedzierska, Barbara;
Szambowska, Anna;
Herman-Antosiewicz, Anna;
Lee, David J.;
Busby, Stephen J.W.;
Wegrzyn, Grzegorz;
Thomas, Mark S.

Publication type:

Article

Entropically-driven binding of mithramycin in the minor groove of C/G-rich DNA sequences.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2215

By:

Barceló, Francisca;
Scotta, Claudia;
Ortiz-Lombardía, Miguel;
Méndez, Carmen;
Salas, José A.;
Portugal, José

Publication type:

Article

Conserved interactions of the splicing factor Ntr1/Spp382 with proteins involved in DNA double-strand break repair and telomere metabolism.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2321, doi. 10.1093/nar/gkm127

By:

Herrmann, Gernot;
Kais, Sanja;
Hoffbauer, Jan;
Shah-Hosseini, Kijwasch;
Brüggenolte, Nicole;
Schober, Heiko;
Fäsi, Margaret;
Schär, Primo

Publication type:

Article

Reversible gene knockdown in mice using a tight, inducible shRNA expression system.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e54, doi. 10.1093/nar/gkm122

By:

Seibler, Jost;
Kleinridders, Andre;
Küter-Luks, Birgit;
Niehaves, Sandra;
Brüning, Jens C.;
Schwenk, Frieder

Publication type:

Article

Ribosomal protein S1 influences trans-translation in vitro and in vivo.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2368, doi. 10.1093/nar/gkm100

By:

Saguy, Matthieu;
Gillet, Reynald;
Skorski, Patricia;
Hermann-Le Denmat, Sylvie;
Felden, Brice

Publication type:

Article

Telomeric localization of the modified DNA base J in the genome of the protozoan parasite Leishmania.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2116, doi. 10.1093/nar/gkm050

By:

Genest, Paul-André;
ter Riet, Bas;
Cijsouw, Tony;
van Luenen, Henri G.A.M.;
Borst, Piet

Publication type:

Article

Ribosomal RNA guanine-(N2)-methyltransferases and their targets.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2295, doi. 10.1093/nar/gkm104

By:

Sergiev, Petr V.;
Bogdanov, Alexey A.;
Dontsova, Olga A.

Publication type:

Article

Cloning of the sea urchin mitochondrial RNA polymerase and reconstitution of the transcription termination system.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2413, doi. 10.1093/nar/gkm159

By:

Polosa, Paola Loguercio;
Deceglie, Stefania;
Falkenberg, Maria;
Roberti, Marina;
Di Ponzio, Barbara;
Gadaleta, Maria Nicola;
Cantatore, Palmiro

Publication type:

Article

Array-based profiling of reference-independent methylation status (aPRIMES) identifies frequent promoter methylation and consecutive downregulation of ZIC2 in pediatric medulloblastoma.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e51, doi. 10.1093/nar/gkm094

By:

Pfister, Stefan;
Schlaeger, Christof;
Mendrzyk, Frank;
Wittmann, Andrea;
Benner, Axel;
Kulozik, Andreas;
Scheurlen, Wolfram;
Radlwimmer, Bernhard;
Lichter, Peter

Publication type:

Article

Structural insight into repair of alkylated DNA by a new superfamily of DNA glycosylases comprising HEAT-like repeats.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2451, doi. 10.1093/nar/gkm039

By:

Dalhus, Bjørn;
Helle, Ina Høydal;
Backe, Paul H.;
Alseth, Ingrun;
Rognes, Torbjørn;
Bjørås, Magnar;
Laerdahl, Jon K.

Publication type:

Article

The neutrophil-activating Dps protein of Helicobacter pylori, HP-NAP, adopts a mechanism different from Escherichia coli Dps to bind and condense DNA.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2247, doi. 10.1093/nar/gkm077

By:

Ceci, Pierpaolo;
Mangiarotti, Laura;
Rivetti, Claudio;
Chiancone, Emilia

Publication type:

Article

Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2283, doi. 10.1093/nar/gkm057

By:

Zhu, Yanglong;
Pulukkunat, Dileep K.;
Li, Yong

Publication type:

Article

Hierarchical classification of functionally equivalent genes in prokaryotes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2125, doi. 10.1093/nar/gkl1114

By:

Wu, Hongwei;
Mao, Fenglou;
Olman, Victor;
Xu, Ying

Publication type:

Article

Orphan nuclear receptor TR2, a mediator of preadipocyte proliferation, is differentially regulated by RA through exchange of coactivator PCAF with corepressor RIP140 on a platform molecule GRIP1.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2269, doi. 10.1093/nar/gkl1147

By:

Gupta, Pawan;
Park, Sung Wook;
Farooqui, Mariya;
Wei, L.-N.

Publication type:

Article

The protein that binds to DNA base J in trypanosomatids has features of a thymidine hydroxylase.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2107, doi. 10.1093/nar/gkm049

By:

Yu, Zhong;
Genest, Paul-André;
ter Riet, Bas;
Sweeney, Kate;
DiPaolo, Courtney;
Kieft, Rudo;
Christodoulou, Evangelos;
Perrakis, Anastassis;
Simmons, Jana M.;
Hausinger, Robert P.;
van Luenen, Henri G.A.M.;
Rigden, Daniel J.;
Sabatini, Robert;
Borst, Piet

Publication type:

Article

Transactivation of a DR-1 PPRE by a human constitutive androstane receptor variant expressed from internal protein translation start sites.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2177, doi. 10.1093/nar/gkm090

By:

Stoner, Matthew A.;
Auerbach, Scott S.;
Zamule, Stephanie M.;
Strom, Stephen C.;
Omiecinski, Curtis J.

Publication type:

Article

A novel microarray approach reveals new tissue-specific signatures of known and predicted mammalian microRNAs.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e52, doi. 10.1093/nar/gkl1118

By:

Beuvink, Iwan;
Kolb, Fabrice A.;
Budach, Wolfgang;
Garnier, Arlette;
Lange, Joerg;
Natt, Francois;
Dengler, Uwe;
Hall, Jonathan;
Filipowicz, Witold;
Weiler, Jan

Publication type:

Article

Site-directed transposon integration in human cells.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e50, doi. 10.1093/nar/gkm089

By:

Yant, Stephen R.;
Huang, Yong;
Akache, Bassel;
Kay, Mark A.

Publication type:

Article

Multiplex amplification of all coding sequences within 10 cancer genes by Gene-Collector.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e47, doi. 10.1093/nar/gkm078

By:

Fredriksson, Simon;
Banér, Johan;
Dahl, Fredrik;
Chu, Angela;
Ji, Hanlee;
Welch, Katrina;
Davis, Ronald W.

Publication type:

Article

Topology of Type II REases revisited; structural classes and the common conserved core.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2227, doi. 10.1093/nar/gkm045

By:

Niv, Masha Y.;
Ripoll, Daniel R.;
Vila, Jorge A.;
Liwo, Adam;
Vanamee, Éva S.;
Aggarwal, Aneel K.;
Weinstein, Harel;
Scheraga, Harold A.

Publication type:

Article

Analysis of the role of Aurora B on the chromosomal targeting of condensin I.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2403, doi. 10.1093/nar/gkm157

By:

Takemoto, Ai;
Murayama, Akiko;
Katano, Miyuki;
Urano, Takeshi;
Furukawa, Koichi;
Yokoyama, Shigeyuki;
Yanagisawa, Junn;
Hanaoka, Fumio;
Kimura, Keiji

Publication type:

Article

Graph-based identification of cancer signaling pathways from published gene expression signatures using PubLiME.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2343, doi. 10.1093/nar/gkm119

By:

Finocchiaro, Giacomo;
Mancuso, Francesco Mattia;
Cittaro, Davide;
Muller, Heiko

Publication type:

Article

ElrA binding to the 3′UTR of cyclin E1 mRNA requires polyadenylation elements.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2167, doi. 10.1093/nar/gkm084

By:

Slevin, Michael K.;
Gourronc, Francoise;
Hartley, Rebecca S.

Publication type:

Article

Trans-splicing of the Ll.LtrB group II intron in Lactococcus lactis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2257, doi. 10.1093/nar/gkl1146

By:

Belhocine, Kamila;
Mak, Anthony B.;
Cousineau, Benoit

Publication type:

Article

Structure of the intramolecular human telomeric G-quadruplex in potassium solution: a novel adenine triple formation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2440, doi. 10.1093/nar/gkm009

By:

Dai, Jixun;
Punchihewa, Chandanamali;
Ambrus, Attila;
Chen, Ding;
Jones, Roger A.;
Yang, Danzhou

Publication type:

Article

Chemical modification of Ce(IV)/EDTA-based artificial restriction DNA cutter for versatile manipulation of double-stranded DNA.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e53, doi. 10.1093/nar/gkm052

By:

Yamamoto, Yoji;
Mori, Masao;
Aiba, Yuichiro;
Tomita, Takafumi;
Chen, Wen;
Zhou, Jing-Min;
Uehara, Akihiko;
Ren, Yi;
Kitamura, Yoshihito;
Komiyama, Makoto

Publication type:

Article

USER fusion: a rapid and efficient method for simultaneous fusion and cloning of multiple PCR products.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e55, doi. 10.1093/nar/gkm106

By:

Geu-Flores, Fernando;
Nour-Eldin, Hussam H.;
Nielsen, Morten T.;
Halkier, Barbara A.

Publication type:

Article

Epigenetic disruption of ribosomal RNA genes and nucleolar architecture in DNA methyltransferase 1 (Dnmt1) deficient cells.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2191, doi. 10.1093/nar/gkm118

By:

Espada, Jesús;
Ballestar, Esteban;
Santoro, Raffaella;
Fraga, Mario F.;
Villar-Garea, Ana;
Németh, Attila;
Lopez-Serra, Lidia;
Ropero, Santiago;
Aranda, Agustin;
Orozco, Helena;
Moreno, Vanessa;
Juarranz, Angeles;
Stockert, Juan Carlos;
Längst, Gernot;
Grummt, Ingrid;
Bickmore, Wendy;
Esteller, Manel

Publication type:

Article

The L1Tc non-LTR retrotransposon of Trypanosoma cruzi contains an internal RNA-pol II-dependent promoter that strongly activates gene transcription and generates unspliced transcripts.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2199, doi. 10.1093/nar/gkl1137

By:

Heras, Sara R.;
López, Manuel C.;
Olivares, Mónica;
Thomas, M. Carmen

Publication type:

Article

Restriction endonuclease BpuJI specific for the 5′-CCCGT sequence is related to the archaeal Holliday junction resolvase family.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2377, doi. 10.1093/nar/gkm164

By:

Sukackaite, Rasa;
Lagunavicius, Arunas;
Stankevicius, Kornelijus;
Urbanke, Claus;
Venclovas, Česlovas;
Siksnys, Virginijus

Publication type:

Article

A non-covalent peptide-based carrier for in vivo delivery of DNA mimics.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. e49, doi. 10.1093/nar/gkm053

By:

Morris, May C.;
Gros, Edwige;
Aldrian-Herrada, Gudrun;
Choob, Michael;
Archdeacon, John;
Heitz, Frederic;
Divita, Gilles

Publication type:

Article

Molecular mechanism of upregulation of survivin transcription by the AT-rich DNA-binding ligand, Hoechst33342: evidence for survivin involvement in drug resistance.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2390

By:

Wu, Jianguo;
Apontes, Pasha;
Song, Lei;
Liang, Ping;
Yang, Lily;
Li, Fengzhi

Publication type:

Article