Works matching IS 03051048 AND DT 2007 AND VI 35 AND IP 18

Results: 42

Structure-function study of maize ribosome-inactivating protein: implications for the internal inactivation region and the sole glutamate in the active site.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6259, doi. 10.1093/nar/gkm687

By:

Mak, Amanda Nga-Sze;
Wong, Yuen-Ting;
An, Young-Jun;
Cha, Sun-Shin;
Sze, Kong-Hung;
Au, Shannon Wing-Ngor;
Wong, Kam-Bo;
Shaw, Pang-Chui

Publication type:

Article

Dynamic interactions within sub-complexes of the H/ACA pseudouridylation guide RNP.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6196, doi. 10.1093/nar/gkm673

By:

Youssef, Osama A.;
Terns, Rebecca M.;
Terns, Michael P.

Publication type:

Article

SAGETTARIUS: a program to reduce the number of tags mapped to multiple transcripts and to plan SAGE sequencing stages.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e122, doi. 10.1093/nar/gkm648

By:

Bianchetti, Laurent;
Wu, Yan;
Guerin, Eric;
Plewniak, Frédéric;
Poch, Olivier

Publication type:

Article

Structural and functional analyses of disease-causing missense mutations in Bloom syndrome protein.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6297, doi. 10.1093/nar/gkm536

By:

Guo, Rong-Bing;
Rigolet, Pascal;
Ren, Hua;
Zhang, Bo;
Zhang, Xing-Dong;
Dou, Shuo-Xing;
Wang, Peng-Ye;
Amor-Gueret, Mounira;
Xi, Xu Guang

Publication type:

Article

High-affinity DNA binding sites for H-NS provide a molecular basis for selective silencing within proteobacterial genomes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6330, doi. 10.1093/nar/gkm712

By:

Lang, Benjamin;
Blot, Nicolas;
Bouffartigues, Emeline;
Buckle, Malcolm;
Geertz, Marcel;
Gualerzi, Claudio O.;
Mavathur, Ramesh;
Muskhelishvili, Georgi;
Pon, Cynthia L.;
Rimsky, Sylvie;
Stella, Stefano;
Babu, M. Madan;
Travers, Andrew

Publication type:

Article

An archaeal orthologue of the universal protein Kae1 is an iron metalloprotein which exhibits atypical DNA-binding properties and apurinic-endonuclease activity in vitro.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6042, doi. 10.1093/nar/gkm554

By:

Hecker, Arnaud;
Leulliot, Nicolas;
Gadelle, Danièle;
Graille, Marc;
Justome, Anthony;
Dorlet, Pierre;
Brochier, Céline;
Quevillon-Cheruel, Sophie;
Le Cam, Eric;
van Tilbeurgh, Herman;
Forterre, Patrick

Publication type:

Article

T1DBase: integration and presentation of complex data for type 1 diabetes research.

Published in:: Nucleic Acids Research, 2007, v. 35, n. 18, p. 6338, doi. 10.1093/nar/gkm715
Publication type:: Article

Genomic profiling of CpG methylation and allelic specificity using quantitative high-throughput mass spectrometry: critical evaluation and improvements.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e119, doi. 10.1093/nar/gkm662

By:

Coolen, Marcel W.;
Statham, Aaron L.;
Gardiner-Garden, Margaret;
Clark, Susan J.

Publication type:

Article

NMR structure of a kissing complex formed between the TAR RNA element of HIV-1 and a LNA-modified aptamer.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6103, doi. 10.1093/nar/gkm655

By:

Lebars, Isabelle;
Richard, Tristan;
Di Primo, Carmelo;
Toulmé, Jean-Jacques

Publication type:

Article

The hSNM1 protein is a DNA 5′-exonuclease.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6115, doi. 10.1093/nar/gkm530

By:

Hejna, James;
Philip, Sahaayaruban;
Ott, Jesse;
Faulkner, Craig;
Moses, Robb

Publication type:

Article

An aminoacyl-tRNA synthetase:elongation factor complex for substrate channeling in archaeal translation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6094, doi. 10.1093/nar/gkm534

By:

Hausmann, Corinne D.;
Prætorius-Ibba, Mette;
Ibba, Michael

Publication type:

Article

Acetylation increases access of remodelling complexes to their nucleosome targets to enhance initiation of V(D)J recombination.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6311, doi. 10.1093/nar/gkm650

By:

Nightingale, Karl P.;
Baumann, Matthias;
Eberharter, Anton;
Mamais, Adamantios;
Becker, Peter B.;
Boyes, Joan

Publication type:

Article

Stabilization of SMAR1 mRNA by PGA2 involves a stem–loop structure in the 5′ UTR.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6004, doi. 10.1093/nar/gkm649

By:

Pavithra, Lakshminarasimhan;
Rampalli, Shravanti;
Sinha, Surajit;
Sreenath, Kadreppa;
Pestell, Richard G.;
Chattopadhyay, Samit

Publication type:

Article

The arginine finger of the Bloom syndrome protein: its structural organization and its role in energy coupling.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6029, doi. 10.1093/nar/gkm544

By:

Ren, Hua;
Dou, Shuo-Xing;
Rigolet, Pascal;
Yang, Ye;
Wang, Peng-Ye;
Amor-Gueret, Mounira;
Xi, Xu Guang

Publication type:

Article

Sequence specific detection of DNA using nicking endonuclease signal amplification (NESA).

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e117, doi. 10.1093/nar/gkm654

By:

Kiesling, Traci;
Cox, Kendra;
Davidson, Eugene A.;
Dretchen, Kenneth;
Grater, Guy;
Hibbard, Shannon;
Lasken, Roger S.;
Leshin, Jonathan;
Skowronski, Evan;
Danielsen, Mark

Publication type:

Article

Catalytic domain of restriction endonuclease BmrI as a cleavage module for engineering endonucleases with novel substrate specificities.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6238, doi. 10.1093/nar/gkm665

By:

Chan, Siu-hong;
Bao, Yongming;
Ciszak, Ewa;
Laget, Sophie;
Xu, Shuang-yong

Publication type:

Article

Sequence-dependent DNA deformability studied using molecular dynamics simulations.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6063, doi. 10.1093/nar/gkm627

By:

Fujii, Satoshi;
Kono, Hidetoshi;
Takenaka, Shigeori;
Go, Nobuhiro;
Sarai, Akinori

Publication type:

Article

Novel rapidly evolving hominid RNAs bind nuclear factor 90 and display tissue-restricted distribution.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6249, doi. 10.1093/nar/gkm668

By:

Parrott, Andrew M.;
Mathews, Michael B.

Publication type:

Article

The Mediator subunit MED1/TRAP220 is required for optimal glucocorticoid receptor-mediated transcription activation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6161, doi. 10.1093/nar/gkm661

By:

Chen, Wei;
Roeder, Robert G.

Publication type:

Article

Back to basics: the untreated rabbit reticulocyte lysate as a competitive system to recapitulate cap/poly(A) synergy and the selective advantage of IRES-driven translation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e121, doi. 10.1093/nar/gkm682

By:

Rifo, Ricardo Soto;
Ricci, Emiliano P.;
Décimo, Didier;
Moncorgé, Olivier;
Ohlmann, Théophile

Publication type:

Article

A specific role for the C-terminal region of the Poly(A)-binding protein in mRNA decay.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6017, doi. 10.1093/nar/gkm452

By:

Simón, Ernesto;
Séraphin, Bertrand

Publication type:

Article

The Arabidopsis homologs of trithorax (ATX1) and enhancer of zeste (CLF) establish ‘bivalent chromatin marks’ at the silent AGAMOUS locus.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6290, doi. 10.1093/nar/gkm464

By:

Saleh, Abdelaty;
Al-Abdallat, Ayed;
Ndamukong, Ivan;
Alvarez-Venegas, Raul;
Avramova, Zoya

Publication type:

Article

Chaperone activation of the hepadnaviral reverse transcriptase for template RNA binding is established by the Hsp70 and stimulated by the Hsp90 system.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6124, doi. 10.1093/nar/gkm628

By:

Stahl, Michael;
Retzlaff, Marco;
Nassal, Michael;
Beck, Jürgen

Publication type:

Article

Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6322, doi. 10.1093/nar/gkm657

By:

Dai, Qing;
Fong, Robert;
Saikia, Mridusmita;
Stephenson, David;
Yu, Yi-tao;
Pan, Tao;
Piccirilli, Joseph A.

Publication type:

Article

A critical three-way junction is conserved in budding yeast and vertebrate telomerase RNAs.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6280, doi. 10.1093/nar/gkm713

By:

Brown, Yogev;
Abraham, Mira;
Pearl, Sivan;
Kabaha, Majdi M.;
Elboher, Elhanan;
Tzfati, Yehuda

Publication type:

Article

Pseudoknot structures with conserved base triples in telomerase RNAs of ciliates.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6150, doi. 10.1093/nar/gkm660

By:

Ulyanov, Nikolai B.;
Shefer, Kinneret;
James, Thomas L.;
Tzfati, Yehuda

Publication type:

Article

Hot-spot consensus of fluoroquinolone-mediated DNA cleavage by Gram-negative and Gram-positive type II DNA topoisomerases.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6075, doi. 10.1093/nar/gkm653

By:

Richter, Sara N.;
Giaretta, Giulia;
Comuzzi, Valentina;
Leo, Elisabetta;
Mitchenall, Lesley A.;
Fisher, L. Mark;
Maxwell, Anthony;
Palumbo, Manlio

Publication type:

Article

Fluorescence of 2-aminopurine reveals rapid conformational changes in the RB69 DNA polymerase-primer/template complexes upon binding and incorporation of matched deoxynucleoside triphosphates.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6052, doi. 10.1093/nar/gkm587

By:

Zhang, H.;
Cao, W.;
Zakharova, E.;
Konigsberg, W.;
De La Cruz, E. M.

Publication type:

Article

The human checkpoint sensor Rad9–Rad1–Hus1 interacts with and stimulates DNA repair enzyme TDG glycosylase.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6207, doi. 10.1093/nar/gkm678

By:

Guan, Xin;
Madabushi, Amrita;
Chang, Dau-Yin;
Fitzgerald, Megan E.;
Shi, Gouli;
Drohat, Alexander C.;
Lu, A-Lien

Publication type:

Article

siRNA-dependent and -independent post-transcriptional cosuppression of the LTR-retrotransposon MAGGY in the phytopathogenic fungus Magnaporthe oryzae.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 5987, doi. 10.1093/nar/gkm646

By:

Murata, Toshiki;
Kadotani, Naoki;
Yamaguchi, Miki;
Tosa, Yukio;
Mayama, Shigeyuki;
Nakayashiki, Hitoshi

Publication type:

Article

Engineering the rRNA decoding site of eukaryotic cytosolic ribosomes in bacteria.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6086, doi. 10.1093/nar/gkm658

By:

Hobbie, Sven N.;
Kalapala, Sarath K.;
Akshay, Subramanian;
Bruell, Christian;
Schmidt, Sebastian;
Dabow, Sabine;
Vasella, Andrea;
Sander, Peter;
Böttger, Erik C.

Publication type:

Article

Deletion of the nuclear exosome component RRP6 leads to continued accumulation of the histone mRNA HTB1 in S-phase of the cell cycle in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6268, doi. 10.1093/nar/gkm691

By:

Canavan, Ruth;
Bond, Ursula

Publication type:

Article

Tryptophane-205 of human topoisomerase I is essential for camptothecin inhibition of negative but not positive supercoil removal.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6170, doi. 10.1093/nar/gkm669

By:

Frøhlich, Rikke From;
Veigaard, Christopher;
Andersen, Félicie Faucon;
McClendon, A. Kathleen;
Gentry, Amanda C.;
Andersen, Anni Hangaard;
Osheroff, Neil;
Stevnsner, Tinna;
Knudsen, Birgitta Ruth

Publication type:

Article

DNA sequencing: bench to bedside and beyond†.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6227, doi. 10.1093/nar/gkm688

By:

Hutchison, Clyde A.

Publication type:

Article

Tip60 functions as a potential corepressor of KLF4 in regulation of HDC promoter activity.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6137, doi. 10.1093/nar/gkm656

By:

Ai, Walden;
Zheng, Hai;
Yang, Xiangdong;
Liu, Ying;
Wang, Timothy C.

Publication type:

Article

In vitro and in silico analysis reveals an efficient algorithm to predict the splicing consequences of mutations at the 5′ splice sites.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 5995, doi. 10.1093/nar/gkm647

By:

Sahashi, Kentaro;
Masuda, Akio;
Matsuura, Tohru;
Shinmi, Jun;
Zhang, Zhujun;
Takeshima, Yasuhiro;
Matsuo, Masafumi;
Sobue, Gen;
Ohno, Kinji

Publication type:

Article

Thermodynamic instability of siRNA duplex is a prerequisite for dependable prediction of siRNA activities.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e123, doi. 10.1093/nar/gkm699

By:

Ichihara, Masatoshi;
Murakumo, Yoshiki;
Masuda, Akio;
Matsuura, Toru;
Asai, Naoya;
Jijiwa, Mayumi;
Ishida, Maki;
Shinmi, Jun;
Yatsuya, Hiroshi;
Qiao, Shanlou;
Takahashi, Masahide;
Ohno, Kinji

Publication type:

Article

Differentiation of core promoter architecture between plants and mammals revealed by LDSS analysis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6219, doi. 10.1093/nar/gkm685

By:

Yamamoto, Yoshiharu Y.;
Ichida, Hiroyuki;
Abe, Tomoko;
Suzuki, Yutaka;
Sugano, Sumio;
Obokata, Junichi

Publication type:

Article

Short pyrosequencing reads suffice for accurate microbial community analysis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e120, doi. 10.1093/nar/gkm541

By:

Liu, Zongzhi;
Lozupone, Catherine;
Hamady, Micah;
Bushman, Frederic D.;
Knight, Rob

Publication type:

Article

A UTF1-based selection system for stable homogeneously pluripotent human embryonic stem cell cultures.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e118, doi. 10.1093/nar/gkm704

By:

Tan, Shen Mynn;
Wang, Siew Tein;
Hentze, Hannes;
Dröge, Peter

Publication type:

Article

A study of 7-deaza-2′-deoxyguanosine–2′-deoxycytidine base pairing in DNA.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. 6181, doi. 10.1093/nar/gkm670

By:

Ganguly, Manjori;
Wang, Feng;
Kaushik, Mahima;
Stone, Michael P.;
Marky, Luis A.;
Gold, Barry

Publication type:

Article

Surveillance of siRNA integrity by FRET imaging.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 18, p. e124, doi. 10.1093/nar/gkm694

By:

Järve, Anne;
Müller, Julius;
Kim, Il-Han;
Rohr, Karl;
MacLean, Caroline;
Fricker, Gert;
Massing, Ulrich;
Eberle, Florian;
Dalpke, Alexander;
Fischer, Roger;
Trendelenburg, Michael F.;
Helm, Mark

Publication type:

Article