Works matching IS 03051048 AND DT 2007 AND VI 35 AND IP 12

Results: 39

Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4018, doi. 10.1093/nar/gkm356

By:

Kitahara, Kei;
Kajiura, Akimasa;
Sato, Neuza Satomi;
Suzuki, Tsutomu

Publication type:

Article

Novel zinc-based fixative for high quality DNA, RNA and protein analysis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e85, doi. 10.1093/nar/gkm433

By:

Lykidis, Dimitrios;
Van Noorden, Susan;
Armstrong, Alan;
Spencer-Dene, Bradley;
Li, Jie;
Zhuang, Zhengping;
Stamp, Gordon W. H.

Publication type:

Article

In vitro selection of a 5′-purine ribonucleotide transferase ribozyme.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4186, doi. 10.1093/nar/gkm438

By:

Kang, Taek Jin;
Suga, Hiroaki

Publication type:

Article

Functional analysis of Saccharomyces cerevisiae ribosomal protein Rpl3p in ribosome synthesis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4203, doi. 10.1093/nar/gkm388

By:

Rosado, Iván V.;
Kressler, Dieter;
de la Cruz, Jesús

Publication type:

Article

Generation of an inducible and optimized piggyBac transposon system†.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e87

By:

Cadiñanos, Juan;
Bradley, Allan

Publication type:

Article

Cockayne syndrome B protein stimulates apurinic endonuclease 1 activity and protects against agents that introduce base excision repair intermediates.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4103, doi. 10.1093/nar/gkm404

By:

Wong, Heng-Kuan;
Muftuoglu, Meltem;
Beck, Gad;
Imam, Syed Z.;
Bohr, Vilhelm A.;
Wilson, David M.

Publication type:

Article

Cellular antisense activity of peptide nucleic acid (PNAs) targeted to HIV-1 polypurine tract (PPT) containing RNA.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3907, doi. 10.1093/nar/gkm374

By:

Boutimah-Hamoudi, Fatima;
Leforestier, Erwan;
Sénamaud-Beaufort, Catherine;
Nielsen, Peter E.;
Giovannangeli, Carine;
Saison-Behmoaras, Tula Ester

Publication type:

Article

A statistical learning approach to the modeling of chromatographic retention of oligonucleotides incorporating sequence and secondary structure data.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4195, doi. 10.1093/nar/gkm338

By:

Sturm, Marc;
Quinten, Sascha;
Huber, Christian G.;
Kohlbacher, Oliver

Publication type:

Article

Efficient and exclusive induction of Tet repressor by the oligopeptide Tip results from co-variation of their interaction site.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3945, doi. 10.1093/nar/gkm357

By:

Klotzsche, Marcus;
Goeke, Dagmar;
Berens, Christian;
Hillen, Wolfgang

Publication type:

Article

Nuclear accumulation of plasmid DNA can be enhanced by non-selective gating of the nuclear pore.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e86, doi. 10.1093/nar/gkm440

By:

Vandenbroucke, Roosmarijn E.;
Lucas, Bart;
Demeester, Joseph;
De Smedt, Stefaan C.;
Sanders, Niek N.

Publication type:

Article

Effects of nucleoid proteins on DNA repression loop formation in Escherichia coli.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3988, doi. 10.1093/nar/gkm419

By:

Becker, Nicole A.;
Kahn, Jason D.;
Maher, L. James

Publication type:

Article

The selenoproteome exhibits widely varying, tissue-specific dependence on selenoprotein P for selenium supply.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3963, doi. 10.1093/nar/gkm355

By:

Hoffmann, Peter R.;
Höge, Simone C.;
Li, Ping-An;
Hoffmann, Fukun W.;
Hashimoto, Ann C.;
Berry, Marla J.

Publication type:

Article

Rad51 and Rad54 ATPase activities are both required to modulate Rad51-dsDNA filament dynamics.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4124

By:

Li, Xuan;
Zhang, Xiao-Ping;
Solinger, Jachen A.;
Kiianitsa, Konstantin;
Yu, Xiong;
Egelman, Edward H.;
Heyer, Wolf-Dietrich

Publication type:

Article

Multiple functions for the N-terminal region of Msh6.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4114, doi. 10.1093/nar/gkm409

By:

Clark, Alan B.;
Deterding, Leesa;
Tomer, Kenneth B.;
Kunkel, Thomas A.

Publication type:

Article

Effects of nucleic acid local structure and magnesium ions on minus-strand transfer mediated by the nucleic acid chaperone activity of HIV-1 nucleocapsid protein.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3974

By:

Wu, Tiyun;
Heilman-Miller, Susan L.;
Levin, Judith G.

Publication type:

Article

A 96-well DNase I footprinting screen for drug–DNA interactions.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e89, doi. 10.1093/nar/gkm467

By:

Ellis, Tom;
Evans, David A.;
Martin, Christopher R. H.;
Hartley, John A.

Publication type:

Article

Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3928, doi. 10.1093/nar/gkm347

By:

Chen, Yen-I G.;
Moore, Roger E.;
Ge, Helen Y.;
Young, Mary K.;
Lee, Terry D.;
Stevens, Scott W.

Publication type:

Article

Characterization of the sequence specificity of the R1Bm endonuclease domain by structural and biochemical studies.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3918, doi. 10.1093/nar/gkm397

By:

Maita, Nobuo;
Aoyagi, Hideyuki;
Osanai, Mizuko;
Shirakawa, Masahiro;
Fujiwara, Haruhiko

Publication type:

Article

Tetracycline aptamer-controlled regulation of pre-mRNA splicing in yeast.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4179, doi. 10.1093/nar/gkm425

By:

Weigand, Julia E.;
Suess, Beatrix

Publication type:

Article

The −11A of promoter DNA and two conserved amino acids in the melting region of σ70 both directly affect the rate limiting step in formation of the stable RNA polymerase-promoter complex, but they do not necessarily interact.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4141, doi. 10.1093/nar/gkm431

By:

Schroeder, Lisa A.;
Choi, Ae-Jin;
deHaseth, Pieter L.

Publication type:

Article

Explaining differences in saturation levels for Affymetrix GeneChip® arrays.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4154, doi. 10.1093/nar/gkm348

By:

Skvortsov, Dmitriy;
Abdueva, Diana;
Curtis, Christina;
Schaub, Betty;
Tavaré, Simon

Publication type:

Article

Conditional brain-specific knockdown of MAPK using Cre/loxP regulated RNA interference.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e90, doi. 10.1093/nar/gkm475

By:

Hitz, Christiane;
Wurst, Wolfgang;
Kühn, Ralf

Publication type:

Article

Regulation of DNA nucleases by molecular crowding.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4086, doi. 10.1093/nar/gkm445

By:

Sasaki, Yoshiharu;
Miyoshi, Daisuke;
Sugimoto, Naoki

Publication type:

Article

A versatile computational pipeline for bacterial genome annotation improvement and comparative analysis, with Brucella as a use case.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3953, doi. 10.1093/nar/gkm377

By:

Yu, G.X.;
Snyder, E.E.;
Boyle, S.M.;
Crasta, O.R.;
Czar, M.;
Mane, S.P.;
Purkayastha, A.;
Sobral, B.;
Setubal, J.C.

Publication type:

Article

Molecular interactions of Escherichia coli ExoIX and identification of its associated 3′–5′ exonuclease activity.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4094, doi. 10.1093/nar/gkm396

By:

Hodskinson, Michael R. G.;
Allen, Lee M.;
Thomson, Duncan P.;
Sayers, Jon R.

Publication type:

Article

Small multicopy, non-integrative shuttle vectors based on the plasmid pRN1 for Sulfolobus acidocaldarius and Sulfolobus solfataricus, model organisms of the (cren-)archaea.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e88, doi. 10.1093/nar/gkm449

By:

Berkner, Silvia;
Grogan, Dennis;
Albers, Sonja-Verena;
Lipps, Georg

Publication type:

Article

Relative abundance of the human mitochondrial transcription system and distinct roles for h-mtTFB1 and h-mtTFB2 in mitochondrial biogenesis and gene expression.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4042, doi. 10.1093/nar/gkm424

By:

Cotney, Justin;
Wang, Zhibo;
Shadel, Gerald S.

Publication type:

Article

DSIF contributes to transcriptional activation by DNA-binding activators by preventing pausing during transcription elongation.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4064, doi. 10.1093/nar/gkm430

By:

Zhu, Wenyan;
Wada, Tadashi;
Okabe, Sachiko;
Taneda, Takuya;
Yamaguchi, Yuki;
Handa, Hiroshi

Publication type:

Article

s-RT-MELT for rapid mutation scanning using enzymatic selection and real time DNA-melting: new potential for multiplex genetic analysis.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. e84, doi. 10.1093/nar/gkm403

By:

Li, Jin;
Berbeco, Ross;
Distel, Robert J.;
Jänne, Pasi A.;
Wang, Lilin;
Makrigiorgos, G. Mike

Publication type:

Article

Uracil–DNA glycosylases SMUG1 and UNG2 coordinate the initial steps of base excision repair by distinct mechanisms.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3879, doi. 10.1093/nar/gkm372

By:

Pettersen, Henrik Sahlin;
Sundheim, Ottar;
Gilljam, Karin Margaretha;
Slupphaug, Geir;
Krokan, Hans Einar;
Kavli, Bodil

Publication type:

Article

PLP/DM20 ratio is regulated by hnRNPH and F and a novel G-rich enhancer in oligodendrocytes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4164, doi. 10.1093/nar/gkm387

By:

Wang, Erming;
Dimova, Neviana;
Cambi, Franca

Publication type:

Article

A chemical synthesis of LNA-2,6-diaminopurine riboside, and the influence of 2′-O-methyl-2,6-diaminopurine and LNA-2,6-diaminopurine ribosides on the thermodynamic properties of 2′-O-methyl RNA/RNA heteroduplexes.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4055, doi. 10.1093/nar/gkm421

By:

Pasternak, Anna;
Kierzek, Elzbieta;
Pasternak, Karol;
Turner, Douglas H.;
Kierzek, Ryszard

Publication type:

Article

Nuclear interactions of topoisomerase II α and β with phospholipid scramblase 1.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4076, doi. 10.1093/nar/gkm434

By:

Wyles, Jessica P.;
Wu, Zhongqin;
Mirski, Shelagh E.L.;
Cole, Susan P.C.

Publication type:

Article

Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4007, doi. 10.1093/nar/gkm245

By:

Rázga, Filip;
Koča, Jaroslav;
Mokdad, Ali;
Šponer, Jiří

Publication type:

Article

Intramolecular DNA quadruplexes with different arrangements of short and long loops.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4214, doi. 10.1093/nar/gkm316

By:

Rachwal, Phillip A.;
Findlow, I. Stuart;
Werner, Joern M.;
Brown, Tom;
Fox, Keith R.

Publication type:

Article

A new connection of mRNP biogenesis and export with transcription-coupled repair.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3893, doi. 10.1093/nar/gkm373

By:

Gaillard, Hélène;
Wellinger, Ralf Erik;
Aguilera, Andrés

Publication type:

Article

‘In-line attack’ conformational effect plays a modest role in an enzyme-catalyzed RNA cleavage: a free energy simulation study.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4001, doi. 10.1093/nar/gkm394

By:

Min, Donghong;
Xue, Song;
Li, Hong;
Yang, Wei

Publication type:

Article

Synthesis and investigation of deoxyribonucleic acid/locked nucleic acid chimeric molecular beacons.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 4030, doi. 10.1093/nar/gkm358

By:

Yang, Chaoyong James;
Wang, Lin;
Wu, Yanrong;
Kim, Youngmi;
Medley, Colin D.;
Lin, Hui;
Tan, Weihong

Publication type:

Article

Phosphorylation in the serine/threonine 2609–2647 cluster promotes but is not essential for DNA-dependent protein kinase-mediated nonhomologous end joining in human whole-cell extracts.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 12, p. 3869, doi. 10.1093/nar/gkm339

By:

Povirk, Lawrence F.;
Zhou, Rui-Zhe;
Ramsden, Dale A.;
Lees-Miller, Susan P.;
Valerie, Kristoffer

Publication type:

Article