Works matching IS 03051048 AND DT 2006 AND VI 34 AND IP 2

Results: 45

A general method for manipulating DNA sequences from any organism with optical tweezers.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e15, doi. 10.1093/nar/gnj016

By:

Fuller, Derek N.;
Gemmen, Gregory J.;
Rickgauer, John Peter;
Dupont, Aurelie;
Millin, Rachel;
Recouvreux, Pierre;
Smith, Douglas E.

Publication type:

Article

Thorough validation of siRNA-induced cell death phenotypes defines new anti-apoptotic protein.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e13

By:

Wu, Weilin;
Hodges, Emily;
Höög, Christer

Publication type:

Article

Therapeutic protein transduction of mammalian cells and mice by nucleic acid-free lentiviral nanoparticles.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e16, doi. 10.1093/nar/gnj014

By:

Link, Nils;
Aubel, Corinne;
Kelm, Jens M.;
Marty, René R.;
Greber, David;
Djonov, Valentin;
Bourhis, Jean;
Weber, Wilfried;
Fussenegger, Martin

Publication type:

Article

Genetic manipulation of an exogenous non-immunoglobulin protein by gene conversion machinery in a chicken B cell line.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e10, doi. 10.1093/nar/gnj013

By:

Kanayama, Naoki;
Todo, Kagefumi;
Takahashi, Satoko;
Magari, Masaki;
Ohmori, Hitoshi

Publication type:

Article

Sequence- and structural-selective nucleic acid binding revealed by the melting of mixtures.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e14, doi. 10.1093/nar/gnj012

By:

Shi, Xiaochun;
Chaires, Jonathan B.

Publication type:

Article

A simple and effective chromosome modification method for large-scale deletion of genome sequences and identification of essential genes in fission yeast.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e11, doi. 10.1093/nar/gnj011

By:

Hirashima, Kyotaro;
Iwaki, Tomoko;
Takegawa, Kaoru;
Giga-Hama, Yuko;
Tohda, Hideki

Publication type:

Article

Comparison of algorithms for the analysis of Affymetrix microarray data as evaluated by co-expression of genes in known operons.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e8, doi. 10.1093/nar/gnj010

By:

Harr, Bettina;
Schlötterer, Christian

Publication type:

Article

MicroRNA expression profiling of single whole embryonic stem cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e9, doi. 10.1093/nar/gnj009

By:

Tang, Fuchou;
Hajkova, Petra;
Barton, Sheila C.;
Lao, Kaiqin;
Surani, M. Azim

Publication type:

Article

Detection of rare mutant K-ras DNA in a single-tube reaction using peptide nucleic acid as both PCR clamp and sensor probe.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. e12, doi. 10.1093/nar/gnj008

By:

Luo, Ji-Dung;
Chan, Err-Cheng;
Shih, Chun-Liang;
Chen, Tai-Long;
Liang, Ying;
Hwang, Tsann-Long;
Chiou, Chiuan-Chian

Publication type:

Article

Sequence effects of aminofluorene-modified DNA duplexes: thermodynamic and circular dichroism properties.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 755, doi. 10.1093/nar/gkj480

By:

Meneni, Srinivasa Rao;
D'Mello, Rhijuta;
Norigian, Gregory;
Baker, Gregory;
Gao, Lan;
Chiarelli, M. Paul;
Cho, Bongsup P.

Publication type:

Article

The genetic map and comparative analysis with the physical map of Trypanosoma brucei.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 764, doi. 10.1093/nar/gkj476

By:

MacLeod, Annette;
Tweedie, Alison;
McLellan, Sarah;
Taylor, Sonya;
Hall, Neil;
Berriman, Matthew;
El-Sayed, Najib M.;
Hope, Michelle;
Turner, C. Michael R.;
Tait, Andy

Publication type:

Article

The Werner syndrome protein operates in base excision repair and cooperates with DNA polymerase β.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 745, doi. 10.1093/nar/gkj475

By:

Harrigan, Jeanine A.;
Wilson, David M.;
Prasad, Rajendra;
Opresko, Patricia L.;
Beck, Gad;
May, Alfred;
Wilson, Samuel H.;
Bohr, Vilhelm A.

Publication type:

Article

HEN1 recognizes 21–24 nt small RNA duplexes and deposits a methyl group onto the 2′ OH of the 3′ terminal nucleotide.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 667, doi. 10.1093/nar/gkj474

By:

Yang, Zhiyong;
Ebright, Yon W.;
Yu, Bin;
Chen, Xuemei

Publication type:

Article

Growth inhibition and apoptosis induced by daunomycin-conjugated triplex-forming oligonucleotides targeting the c-myc gene in prostate cancer cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 734, doi. 10.1093/nar/gkj473

By:

Napoli, Sara;
Negri, Umberto;
Arcamone, Federico;
Capobianco, Massimo L.;
Carbone, Giuseppina M.;
Catapano, Carlo V.

Publication type:

Article

Degradation of RNA in bacteria: comparison of mRNA and stable RNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 659, doi. 10.1093/nar/gkj472

By:

Deutscher, Murray P.

Publication type:

Article

Post-transcriptional nucleotide modification and alternative folding of RNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 721, doi. 10.1093/nar/gkj471

By:

Helm, Mark

Publication type:

Article

Molecular dynamics simulations of sarcin–ricin rRNA motif.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 697, doi. 10.1093/nar/gkj470

By:

Špačková, Nad'a;
Šponer, Jiří

Publication type:

Article

Experimental approaches to identify non-coding RNAs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 635, doi. 10.1093/nar/gkj469

By:

Hüttenhofer, Alexander;
Vogel, Jörg

Publication type:

Article

High throughput detection of M6P/IGF2R intronic hypermethylation and LOH in ovarian cancer.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 555, doi. 10.1093/nar/gkj468

By:

Huang, Zhiqing;
Wen, Yaqing;
Shandilya, Ruby;
Marks, Jeffrey R.;
Berchuck, Andrew;
Murphy, Susan K.

Publication type:

Article

Two conformational states in the crystal structure of the Homo sapiens cytoplasmic ribosomal decoding A site.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 676, doi. 10.1093/nar/gkj467

By:

Kondo, Jiro;
Urzhumtsev, Alexandre;
Westhof, Eric

Publication type:

Article

Deletion of the Tetrahymena thermophila rDNA replication fork barrier region disrupts macronuclear rDNA excision and creates a fragile site in the micronuclear genome.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 620, doi. 10.1093/nar/gkj466

By:

Yakisich, J. S.;
Kapler, G. M.

Publication type:

Article

Hfq variant with altered RNA binding functions.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 709, doi. 10.1093/nar/gkj464

By:

Ziolkowska, Katarzyna;
Derreumaux, Philippe;
Folichon, Marc;
Pellegrini, Olivier;
Régnier, Philippe;
Boni, Irina V.;
Hajnsdorf, Eliane

Publication type:

Article

Unbiased in vitro selection reveals the unique character of the self-cleaving antigenomic HDV RNA sequence.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 584, doi. 10.1093/nar/gkj463

By:

Nehdi, Atef;
Perreault, Jean-Pierre

Publication type:

Article

Microarray-based DNA methylation profiling: technology and applications.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 528, doi. 10.1093/nar/gkj461

By:

Schumacher, Axel;
Kapranov, Philipp;
Kaminsky, Zachary;
Flanagan, James;
Assadzadeh, Abbas;
Yau, Patrick;
Virtanen, Carl;
Winegarden, Neil;
Cheng, Jill;
Gingeras, Thomas;
Petronis, Arturas

Publication type:

Article

Regulation of the human p21(waf1/cip1) gene promoter via multiple binding sites for p53 and the vitamin D3 receptor.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 543, doi. 10.1093/nar/gkj460

By:

Saramäki, Anna;
Banwell, Claire M.;
Campbell, Moray J.;
Carlberg, Carsten

Publication type:

Article

Nucleolin links to arsenic-induced stabilization of GADD45α mRNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 485, doi. 10.1093/nar/gkj459

By:

Zhang, Yadong;
Bhatia, Deepak;
Xia, Hongfeng;
Castranova, Vince;
Shi, Xianglin;
Chen, Fei

Publication type:

Article

Nucleic acid binding and chaperone properties of HIV-1 Gag and nucleocapsid proteins.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 593, doi. 10.1093/nar/gkj458

By:

Cruceanu, Margareta;
Urbaneja, Maria A.;
Hixson, Catherine V.;
Johnson, Donald G.;
Datta, Siddhartha A.;
Fivash, Matthew J.;
Stephen, Andrew G.;
Fisher, Robert J.;
Gorelick, Robert J.;
Casas-Finet, Jose R.;
Rein, Alan;
Rouzina, Ioulia;
Williams, Mark C.

Publication type:

Article

BAC to the future! or oligonucleotides: a perspective for micro array comparative genomic hybridization (array CGH).

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 445, doi. 10.1093/nar/gkj456

By:

Ylstra, Bauke;
van den IJssel, Paul;
Carvalho, Beatriz;
Brakenhoff, Ruud H.;
Meijer, Gerrit A.

Publication type:

Article

2′-Deoxy-2′-fluoro-β-d-arabinonucleic acid (2′F-ANA) modified oligonucleotides (ON) effect highly efficient, and persistent, gene silencing.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 451, doi. 10.1093/nar/gkj455

By:

Kalota, A.;
Karabon, L.;
Swider, C. R.;
Viazovkina, E.;
Elzagheid, M.;
Damha, M. J.;
Gewirtz, A. M.

Publication type:

Article

Base-stacking and base-pairing contributions into thermal stability of the DNA double helix.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 564, doi. 10.1093/nar/gkj454

By:

Yakovchuk, Peter;
Protozanova, Ekaterina;
Frank-Kamenetskii, Maxim D.

Publication type:

Article

Induction of the lac promoter in the absence of DNA loops and the stoichiometry of induction.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 606, doi. 10.1093/nar/gkj453

By:

Oehler, Stefan;
Alberti, Siegfried;
Müller-Hill, Benno

Publication type:

Article

Evidence that the S.cerevisiae Sgs1 protein facilitates recombinational repair of telomeres during senescence.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 506, doi. 10.1093/nar/gkj452

By:

Azam, Mahrukh;
Lee, Julia Y.;
Abraham, Veena;
Chanoux, Rebecca;
Schoenly, Kimberly A.;
Johnson, F. Brad

Publication type:

Article

Sub-plastidial localization of two different phage-type RNA polymerases in spinach chloroplasts.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 436, doi. 10.1093/nar/gkj451

By:

Azevedo, Jacinthe;
Courtois, Florence;
Lerbs-Mache, Silva

Publication type:

Article

The Plasmodium selenoproteome.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 496, doi. 10.1093/nar/gkj450

By:

Lobanov, Alexey V.;
Delgado, Cesar;
Rahlfs, Stefan;
Novoselov, Sergey V.;
Kryukov, Gregory V.;
Gromer, Stephan;
Hatfield, Dolph L.;
Becker, Katja;
Gladyshev, Vadim N.

Publication type:

Article

Hierarchical clustering algorithm for comprehensive orthologous-domain classification in multiple genomes.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 647, doi. 10.1093/nar/gkj448

By:

Uchiyama, Ikuo

Publication type:

Article

Molecular characterization of geminivirus-derived small RNAs in different plant species.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 462, doi. 10.1093/nar/gkj447

By:

Akbergenov, Rashid;
Si-Ammour, Azeddine;
Blevins, Todd;
Amin, Imran;
Kutter, Claudia;
Vanderschuren, Herve;
Zhang, Peng;
Gruissem, Wilhelm;
Meins, Frederick;
Hohn, Thomas;
Pooggin, Mikhail M.

Publication type:

Article

Polη, Polζ and Rev1 together are required for G to T transversion mutations induced by the (+)- and (−)-trans-anti-BPDE-N2-dG DNA adducts in yeast cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 417, doi. 10.1093/nar/gkj446

By:

Zhao, Bo;
Wang, Jillian;
Geacintov, Nicholas E.;
Wang, Zhigang

Publication type:

Article

Saccharomyces cerevisiae Est3p dimerizes in vitro and dimerization contributes to efficient telomere replication in vivo.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 407, doi. 10.1093/nar/gkj445

By:

Yang, Cui-Ping;
Chen, Yong-Bin;
Meng, Fei-Long;
Zhou, Jin-Qiu

Publication type:

Article

Examination of an inverted repeat within the F factor origin of transfer: context dependence of F TraI relaxase DNA specificity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 426, doi. 10.1093/nar/gkj444

By:

Williams, Sarah L.;
Schildbach, Joel F.

Publication type:

Article

Complex interactions of HIV-1 nucleocapsid protein with oligonucleotides.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 472, doi. 10.1093/nar/gkj442

By:

Fisher, Robert J.;
Fivash, Matthew J.;
Stephen, Andrew G.;
Hagan, Nathan A.;
Shenoy, Shilpa R.;
Medaglia, Maxine V.;
Smith, Lindsey R.;
Worthy, Karen M.;
Simpson, John T.;
Shoemaker, Robert;
McNitt, Karen L.;
Johnson, Donald G.;
Hixson, Catherine V.;
Gorelick, Robert J.;
Fabris, Daniele;
Henderson, Louis E.;
Rein, Alan

Publication type:

Article

Structure–function analysis of the kinase-CPD domain of yeast tRNA ligase (Trl1) and requirements for complementation of tRNA splicing by a plant Trl1 homolog.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 517, doi. 10.1093/nar/gkj441

By:

Wang, Li Kai;
Schwer, Beate;
Englert, Markus;
Beier, Hildburg;
Shuman, Stewart

Publication type:

Article

Rampant polyuridylylation of plastid gene transcripts in the dinoflagellate Lingulodinium.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 613, doi. 10.1093/nar/gkj438

By:

Wang, Yunling;
Morse, David

Publication type:

Article

p66α and p66β of the Mi-2/NuRD complex mediate MBD2 and histone interaction.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 397, doi. 10.1093/nar/gkj437

By:

Brackertz, Marc;
Gong, Zihua;
Leers, Jörg;
Renkawitz, Rainer

Publication type:

Article

Similarities and differences in interaction of K+ and Na+ with condensed ordered DNA. A molecular dynamics computer simulation study.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 686, doi. 10.1093/nar/gkj434

By:

Cheng, Yuhua;
Korolev, Nikolay;
Nordenskiöld, Lars

Publication type:

Article

Engineered external guide sequences are highly effective in inducing RNase P for inhibition of gene expression and replication of human cytomegalovirus.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 2, p. 575, doi. 10.1093/nar/gkj431

By:

Yang, Yong-Hua;
Li, Hongjian;
Zhou, Tianhong;
Kim, Kihoon;
Liu, Fenyong

Publication type:

Article