Works matching IS 03051048 AND DT 2006 AND VI 34 AND IP 19

Results: 46

Different loop arrangements of intramolecular human telomeric (3+1) G-quadruplexes in K+ solution.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5715, doi. 10.1093/nar/gkl726

By:

Phan, Anh Tuân;
Luu, Kim Ngoc;
Patel, Dinshaw J.

Publication type:

Article

MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5623, doi. 10.1093/nar/gkl723

By:

Noguchi, Hideki;
Park, Jungho;
Takagi, Toshihisa

Publication type:

Article

Evolutionarily conserved and non-conserved retrovirus restriction activities of artiodactyl APOBEC3F proteins.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5683

By:

Jónsson, Stefán R.;
Haché, Guylaine;
Stenglein, Mark D.;
Fahrenkrug, Scott C.;
Andrésdóttir, Valgerdur;
Harris, Reuben S.

Publication type:

Article

Codeine-binding RNA aptamers and rapid determination of their binding constants using a direct coupling surface plasmon resonance assay.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5670, doi. 10.1093/nar/gkl718

By:

Win, Maung Nyan;
Klein, Joshua S.;
Smolke, Christina D.

Publication type:

Article

Effects of the trinucleotide preceding the self-cleavage site on eggplant latent viroid hammerheads: differences in co- and post-transcriptional self-cleavage may explain the lack of trinucleotide AUC in most natural hammerheads.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5613, doi. 10.1093/nar/gkl717

By:

Carbonell, Alberto;
De la Peña, Marcos;
Flores, Ricardo;
Gago, Selma

Publication type:

Article

A high throughput method for genome-wide analysis of retroviral integration.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e134, doi. 10.1093/nar/gkl716

By:

Mantovani, Julie;
Holic, Nathalie;
Martinez, Kelly;
Danos, Olivier;
Perea, Javier

Publication type:

Article

Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5660, doi. 10.1093/nar/gkl715

By:

Shao, Yu;
Wu, Yan;
Chan, Chi Yu;
McDonough, Kathleen;
Ding, Ye

Publication type:

Article

DeepSAGE—digital transcriptomics with high sensitivity, simple experimental protocol and multiplexing of samples.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e133, doi. 10.1093/nar/gkl714

By:

Nielsen, Kåre L.;
Høgh, Annabeth Laursen;
Emmersen, Jeppe

Publication type:

Article

Assessing incomplete deprotection of microarray oligonucleotides in situ.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e131, doi. 10.1093/nar/gkl713

By:

Dressman, Holly K.;
Barley-Maloney, Lise;
Rowlette, Laura-Leigh;
Agris, Paul F.;
Garcia-Blanco, Mariano A.

Publication type:

Article

Multiple signaling pathways regulate the transcriptional activity of the orphan nuclear receptor NURR1.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5515, doi. 10.1093/nar/gkl712

By:

Sacchetti, Paola;
Carpentier, Rodolphe;
Ségard, Pascaline;
Olivé-Cren, Cécile;
Lefebvre, Philippe

Publication type:

Article

Human sat III and Drosophila hsrω transcripts: a common paradigm for regulation of nuclear RNA processing in stressed cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5508, doi. 10.1093/nar/gkl711

By:

Jolly, Caroline;
Lakhotia, Subhash C.

Publication type:

Article

Identification of multiple transcription initiation, polyadenylation, and splice sites in the Drosophila melanogaster TART family of telomeric retrotransposons.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5498, doi. 10.1093/nar/gkl709

By:

Maxwell, Patrick H.;
Belote, John M.;
Levis, Robert W.

Publication type:

Article

Analysis of protein sequence and interaction data for candidate disease gene prediction.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e130, doi. 10.1093/nar/gkl707

By:

George, Richard A.;
Liu, Jason Y.;
Feng, Lina L.;
Bryson-Richardson, Robert J.;
Fatkin, Diane;
Wouters, Merridee A.

Publication type:

Article

Alu elements as regulators of gene expression.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5491, doi. 10.1093/nar/gkl706

By:

Häsler, Julien;
Strub, Katharina

Publication type:

Article

Glutamate racemase from Mycobacterium tuberculosis inhibits DNA gyrase by affecting its DNA-binding.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5567, doi. 10.1093/nar/gkl704

By:

Sengupta, Sugopa;
Shah, Meera;
Nagaraja, Valakunja

Publication type:

Article

Controlling bacteriophage phi29 DNA-packaging motor by addition or discharge of a peptide at N-terminus of connector protein that interacts with pRNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5482, doi. 10.1093/nar/gkl701

By:

Sun, Jianhe;
Cai, Ying;
Moll, Wulf-Dieter;
Guo, Peixuan

Publication type:

Article

Using DNA pools for genotyping trios.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e129, doi. 10.1093/nar/gkl700

By:

Beckman, Kenneth B.;
Abel, Kenneth J.;
Braun, Andreas;
Halperin, Eran

Publication type:

Article

β-Catenin stabilizes Cyclooxygenase-2 mRNA by interacting with AU-rich elements of 3′-UTR.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5705, doi. 10.1093/nar/gkl698

By:

Lee, Hee Kyu;
Jeong, Sunjoo

Publication type:

Article

The key DNA-binding residues in the C-terminal domain of Mycobacterium tuberculosis DNA gyrase A subunit (GyrA).

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5650, doi. 10.1093/nar/gkl695

By:

Huang, You-Yi;
Deng, Jiao-Yu;
Gu, Jing;
Zhang, Zhi-Ping;
Maxwell, Anthony;
Bi, Li-Jun;
Chen, Yuan-Yuan;
Zhou, Ya-Feng;
Yu, Zi-Niu;
Zhang, Xian-En

Publication type:

Article

Crystal structures of oligonucleotides including the integrase processing site of the Moloney murine leukemia virus.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5353

By:

Montaño, Sherwin P.;
Coté, Marie L.;
Roth, Monica J.;
Georgiadis, Millie M.

Publication type:

Article

Structural analysis of aligned RNAs.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5471

By:

Voß, Björn

Publication type:

Article

PIAS3 induction of PRB sumoylation represses PRB transactivation by destabilizing its retention in the nucleus.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5552, doi. 10.1093/nar/gkl691

By:

Man, Jiang-Hong;
Li, Hui-Yan;
Zhang, Pei-Jing;
Zhou, Tao;
He, Kun;
Pan, Xin;
Liang, Bing;
Li, Ai-Ling;
Zhao, Jie;
Gong, Wei-Li;
Jin, Bao-Feng;
Xia, Qing;
Yu, Ming;
Shen, Bei-Fen;
Zhang, Xue-Min

Publication type:

Article

The Arabidopsis SUVR4 protein is a nucleolar histone methyltransferase with preference for monomethylated H3K9.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5461, doi. 10.1093/nar/gkl687

By:

Thorstensen, Tage;
Fischer, Andreas;
Sandvik, Silje V.;
Johnsen, Sylvia S.;
Grini, Paul E.;
Reuter, Gunter;
Aalen, Reidunn B.

Publication type:

Article

Purification of the yeast Slx5–Slx8 protein complex and characterization of its DNA-binding activity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5541, doi. 10.1093/nar/gkl685

By:

Yang, Litao;
Mullen, Janet R.;
Brill, Steven J.

Publication type:

Article

The majority of Escherichia coli mRNAs undergo post-transcriptional modification in exponentially growing cells.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5695, doi. 10.1093/nar/gkl684

By:

Mohanty, Bijoy K.;
Kushner, Sidney R.

Publication type:

Article

Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5638, doi. 10.1093/nar/gkl683

By:

Becker, Nils B.;
Wolff, Lars;
Everaers, Ralf

Publication type:

Article

Antibody binding loop insertions as diversity elements.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e132, doi. 10.1093/nar/gkl681

By:

Kiss, Csaba;
Fisher, Hugh;
Pesavento, Emanuele;
Dai, Minghua;
Valero, Rosa;
Ovecka, Milan;
Nolan, Rhiannon;
Phipps, M. Lisa;
Velappan, Nileena;
Chasteen, Leslie;
Martinez, Jennifer S.;
Waldo, Geoffrey S.;
Pavlik, Peter;
Bradbury, Andrew R.M.

Publication type:

Article

A novel endonuclease IV post-PCR genotyping system.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e128, doi. 10.1093/nar/gkl679

By:

Kutyavin, Igor V.;
Milesi, Dave;
Belousov, Yevgeniy;
Podyminogin, Mikhail;
Vorobiev, Alexei;
Gorn, Vladimir;
Lukhtanov, Eugeny A.;
Vermeulen, Nicolaas M. J.;
Mahoney, Walt

Publication type:

Article

SIR2 modifies histone H4-K16 acetylation and affects superhelicity in the ARS region of plasmid chromatin in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5426, doi. 10.1093/nar/gkl678

By:

Chiani, Francesco;
Felice, Francesca Di;
Camilloni, Giorgio

Publication type:

Article

Collision events between RNA polymerases in convergent transcription studied by atomic force microscopy.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5416, doi. 10.1093/nar/gkl668

By:

Crampton, Neal;
Bonass, William A.;
Kirkham, Jennifer;
Rivetti, Claudio;
Thomson, Neil H.

Publication type:

Article

Non-random, individual-specific methylation profiles are present at the sixth CTCF binding site in the human H19/IGF2 imprinting control region.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5438, doi. 10.1093/nar/gkl657

By:

Tost, Jörg;
Jammes, Hélène;
Dupont, Jean-Michel;
Buffat, Christophe;
Robert, Brigitte;
Mignot, Thérèse-Marie;
Mondon, Françoise;
Carbonne, Bruno;
Siméoni, Umberto;
Grangé, Gilles;
Kerjean, Antoine;
Ferré, Françoise;
Gut, Ivo Glynne;
Vaiman, Daniel

Publication type:

Article

Quadruplex DNA: sequence, topology and structure.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5402, doi. 10.1093/nar/gkl655

By:

Burge, Sarah;
Parkinson, Gary N.;
Hazel, Pascale;
Todd, Alan K.;
Neidle, Stephen

Publication type:

Article

In vivo DNase I sensitivity of the Streptomyces coelicolor chromosome correlates with gene expression: implications for bacterial chromosome structure.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5395, doi. 10.1093/nar/gkl649

By:

McArthur, Michael;
Bibb, Mervyn

Publication type:

Article

Systematic characterization of 2′-deoxynucleoside- 5′-triphosphate analogs as substrates for DNA polymerases by polymerase chain reaction and kinetic studies on enzymatic production of modified DNA.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5383, doi. 10.1093/nar/gkl637

By:

Kuwahara, Masayasu;
Nagashima, Jun-ichi;
Hasegawa, Masatoshi;
Tamura, Takehiro;
Kitagata, Rina;
Hanawa, Kazuo;
Hososhima, Shin-ichi;
Kasamatsu, Toshiyuki;
Ozaki, Hiroaki;
Sawai, Hiroaki

Publication type:

Article

Expression of C-terminal deleted p53 isoforms in neuroblastoma.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5603, doi. 10.1093/nar/gkl619

By:

Goldschneider, David;
Horvilleur, Emilie;
Plassa, Louis-François;
Guillaud-Bataille, Marine;
Million, Karine;
Wittmer-Dupret, Evelyne;
Danglot, Gisèle;
Thé, Hughes de;
Bénard, Jean;
May, Evelyne;
Douc-Rasy, Sétha

Publication type:

Article

In vitro evolution of single-chain antibodies using mRNA display.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e127, doi. 10.1093/nar/gkl618

By:

Fukuda, Isao;
Kojoh, Kanehisa;
Tabata, Noriko;
Doi, Nobuhide;
Takashima, Hideaki;
Miyamoto-Sato, Etsuko;
Yanagawa, Hiroshi

Publication type:

Article

Double-strand breaks in the myotonic dystrophy type 1 and the fragile X syndrome triplet repeat sequences induce different types of mutations in DNA flanking sequences in Escherichia coli.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5369, doi. 10.1093/nar/gkl612

By:

Kosmider, Beata;
Wells, Robert D.

Publication type:

Article

Quantitative analysis of the oxidative DNA lesion, 2,2-diamino-4-(2-deoxy-β-d-erythro-pentofuranosyl)amino]-5(2H)-oxazolone (oxazolone), in vitro and in vivo by isotope dilution-capillary HPLC-ESI-MS/MS.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5449, doi. 10.1093/nar/gkl596

By:

Matter, Brock;
Malejka-Giganti, Danuta;
Csallany, A. Saari;
Tretyakova, Natalia

Publication type:

Article

Different modes and potencies of translational repression by sequence-specific RNA–protein interaction at the 5′-UTR.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5528, doi. 10.1093/nar/gkl584

By:

Nie, Minghua;
Htun, Han

Publication type:

Article

Molecular dynamics simulations of human $${\hbox{ tRNA }}_{\hbox{ UUU }}^{\hbox{ Lys },3}$$ : the role of modified bases in mRNA recognition.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5361, doi. 10.1093/nar/gkl580

By:

McCrate, Nina E.;
Varner, Mychel E.;
Kim, Kenneth I.;
Nagan, Maria C.

Publication type:

Article

Functional characterization of a 48 kDa Trypanosoma brucei cap 2 RNA methyltransferase.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5594, doi. 10.1093/nar/gkl573

By:

Hall, Megan P.;
Ho, C. Kiong

Publication type:

Article

The Saccharomyces cerevisiae RNA polymerase III recruitment factor subunits Brf1 and Bdp1 impose a strict sequence preference for the downstream half of the TATA box.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5585, doi. 10.1093/nar/gkl534

By:

Tsihlis, Nick D.;
Grove, Anne

Publication type:

Article

Specific binding of a hexanucleotide to HIV-1 reverse transcriptase: a novel class of bioactive molecules.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5631, doi. 10.1093/nar/gkl533

By:

Mescalchin, Alessandra;
Wünsche, Winfried;
Laufer, Sandra D.;
Grohmann, Dina;
Restle, Tobias;
Sczakiel, Georg

Publication type:

Article

Robust analysis of 5′-transcript ends (5′-RATE): a novel technique for transcriptome analysis and genome annotation.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e126, doi. 10.1093/nar/gkl522

By:

Gowda, Malali;
Li, Haumeng;
Alessi, Joe;
Chen, Feng;
Pratt, Richard;
Wang, Guo-Liang

Publication type:

Article

Troubleshooting coupled in vitro transcription–translation system derived from Escherichia coli cells: synthesis of high-yield fully active proteins.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. e135, doi. 10.1093/nar/gkl462

By:

Iskakova, Madina B.;
Szaflarski, Witold;
Dreyfus, Marc;
Remme, Jaanus;
Nierhaus, Knud H.

Publication type:

Article

RusA Holliday junction resolvase: DNA complex structure—insights into selectivity and specificity.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 19, p. 5577, doi. 10.1093/nar/gkl447

By:

Macmaster, Rachel;
Sedelnikova, Svetlana;
Baker, Patrick J.;
Bolt, Edward L.;
Lloyd, Robert G.;
Rafferty, John B.

Publication type:

Article