Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 8

Results: 54

Proof of concept for microarray-based detection of DNA-binding oncogenes in cell extracts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e79, doi. 10.1093/nar/gni079

By:

Egener, Tanja;
Roulet, Emmanuelle;
Zehnder, Marc;
Bucher, Philipp;
Mermod, Nicolas

Publication type:

Article

Using a microfluidic device for 1 μl DNA microarray hybridization in 500 s.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e78, doi. 10.1093/nar/gni078

By:

Wei, Cheng-Wey;
Cheng, Ji-Yen;
Huang, Chih-Ting;
Yen, Meng-Hua;
Young, Tai-Horng

Publication type:

Article

Molecular beacons with a homo-DNA stem: improving target selectivity.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e77, doi. 10.1093/nar/gni076

By:

Crey-Desbiolles, Caroline;
Ahn, Dae-Ro;
Leumann, Christian J.

Publication type:

Article

In situ oligonucleotide synthesis on poly(dimethylsiloxane): a flexible substrate for microarray fabrication.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e75, doi. 10.1093/nar/gni075

By:

Moorcroft, Matthew J.;
Meuleman, Wouter R. A.;
Latham, Steven G.;
Nicholls, Thomas J.;
Egeland, Ryan D.;
Southern, Edwin M.

Publication type:

Article

Production of viral vectors using recombinase-mediated cassette exchange.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e76, doi. 10.1093/nar/gni074

By:

Nakano, Masakazu;
Odaka, Kazuhiko;
Takahashi, Yuzuka;
Ishimura, Masakazu;
Saito, Izumu;
Kanegae, Yumi

Publication type:

Article

Array-based analysis of genomic DNA methylation patterns of the tumour suppressor gene p16INK4A promoter in colon carcinoma cell lines.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e73, doi. 10.1093/nar/gni072

By:

Mund, Cora;
Beier, Verena;
Bewerunge, Peter;
Dahms, Michael;
Lyko, Frank;
Hoheisel, Jörg D.

Publication type:

Article

PieceMaker: selection of DNA fragments for selector-guided multiplex amplification.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e72, doi. 10.1093/nar/gni071

By:

Stenberg, Johan;
Dahl, Fredrik;
Landegren, Ulf;
Nilsson, Mats

Publication type:

Article

Multiplex amplification enabled by selective circularization of large sets of genomic DNA fragments.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e71, doi. 10.1093/nar/gni070

By:

Dahl, Fredrik;
Gullberg, Mats;
Stenberg, Johan;
Landegren, Ulf;
Nilsson, Mats

Publication type:

Article

Diagnostic application of padlock probes—multiplex detection of plant pathogens using universal microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e70, doi. 10.1093/nar/gni069

By:

Szemes, Marianna;
Bonants, Peter;
de Weerdt, Marjanne;
Baner, Johan;
Landegren, Ulf;
Schoen, Cor D.

Publication type:

Article

Suppression of vascular endothelial growth factor expression at the transcriptional and post-transcriptional levels.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. e74, doi. 10.1093/nar/gni068

By:

Kwon, Heung-Sun;
Shin, Hyun-Chul;
Kim, Jin-Soo

Publication type:

Article

Analysis of scanning force microscopy images of protein-induced DNA bending using simulations.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2767, doi. 10.1093/nar/gki577

By:

Dame, Remus T.;
van Mameren, Joost;
Luijsterburg, Martijn S.;
Mysiak, Monika E.;
Janićijević, Ana;
Pazdzior, Grzegorz;
van der Vliet, Peter C.;
Wyman, Claire;
Wuite, Gijs J.L.

Publication type:

Article

RNR1, a 3′–5′ exoribonuclease belonging to the RNR superfamily, catalyzes 3′ maturation of chloroplast ribosomal RNAs in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2751, doi. 10.1093/nar/gki576

By:

Bollenbach, Thomas J.;
Lange, Heike;
Gutierrez, Ryan;
Erhardt, Mathieu;
Stern, David B.;
Gagliardi, Dominique

Publication type:

Article

Common patterns in type II restriction enzyme binding sites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2726, doi. 10.1093/nar/gki575

By:

Nikolajewa, Svetlana;
Beyer, Andreas;
Friedel, Maik;
Hollunder, Jens;
Wilhelm, Thomas

Publication type:

Article

Torque-limited RecA polymerization on dsDNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2766, doi. 10.1093/nar/gki571

By:

van der Heijden, Thijn;
van Noort, John;
van Leest, Hendrikje;
Kanaar, Roland;
Wyman, Claire;
Dekker, Nynke;
Dekker, Cees

Publication type:

Article

The highly conserved glutamic acid 791 of Rpb2 is involved in the binding of NTP and Mg(B) in the active center of human RNA polymerase II.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2629, doi. 10.1093/nar/gki570

By:

Langelier, Marie-France;
Baali, Dania;
Trinh, Vincent;
Greenblatt, Jack;
Archambault, Jacques;
Coulombe, Benoit

Publication type:

Article

Regulation of ribonucleotide reductase M2 expression by the upstream AUGs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2715, doi. 10.1093/nar/gki569

By:

Dong, Zizheng;
Liu, Yang;
Zhang, Jian-Ting

Publication type:

Article

Nucleoside diphosphate kinase from Mycobacterium tuberculosis cleaves single strand DNA within the human c-myc promoter in an enzyme-catalyzed reaction.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2707, doi. 10.1093/nar/gki568

By:

Kumar, Praveen;
Verma, Anjali;
Saini, Adesh Kumar;
Chopra, Puneet;
Chakraborti, Pradip K.;
Singh, Yogendra;
Chowdhury, Shantanu

Publication type:

Article

Clustering and conservation patterns of human microRNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2697, doi. 10.1093/nar/gki567

By:

Altuvia, Yael;
Landgraf, Pablo;
Lithwick, Gila;
Elefant, Naama;
Pfeffer, Sébastien;
Aravin, Alexei;
Brownstein, Michael J.;
Tuschl, Thomas;
Margalit, Hanah

Publication type:

Article

Identification of brassinosteroid-related genes by means of transcript co-response analyses.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2685, doi. 10.1093/nar/gki566

By:

Lisso, Janina;
Steinhauser, Dirk;
Altmann, Thomas;
Kopka, Joachim;
Müssig, Carsten

Publication type:

Article

DNA-tension dependence of restriction enzyme activity reveals mechanochemical properties of the reaction pathway.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2676, doi. 10.1093/nar/gki565

By:

van den Broek, Bram;
Noom, Maarten C.;
Wuite, Gijs J. L.

Publication type:

Article

The recent transfer of a homing endonuclease gene.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2734, doi. 10.1093/nar/gki564

By:

Haugen, Peik;
Wikmark, Odd-Gunnar;
Vader, Anna;
Coucheron, Dag H.;
Sjøttem, Eva;
Johansen, Steinar D.

Publication type:

Article

Exploration of factors driving incorporation of unnatural dNTPS into DNA by Klenow fragment (DNA polymerase I) and DNA polymerase α.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2620, doi. 10.1093/nar/gki563

By:

Kincaid, Kristi;
Beckman, Jeff;
Zivkovic, Aleksandra;
Halcomb, Randall L.;
Engels, Joachim W.;
Kuchta, Robert D.

Publication type:

Article

The third helix of the homeodomain of paired class homeodomain proteins acts as a recognition helix both for DNA and protein interactions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2661, doi. 10.1093/nar/gki562

By:

Bruun, Jack-Ansgar;
Thomassen, Ernst Ivan Simon;
Kristiansen, Kurt;
Tylden, Garth;
Holm, Turid;
Mikkola, Ingvild;
Bjørkøy, Geir;
Johansen, Terje

Publication type:

Article

Chromatin assembly factor Asf1p-dependent occupancy of the SAS histone acetyltransferase complex at the silent mating-type locus HMLα.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2742, doi. 10.1093/nar/gki560

By:

Osada, Shigehiro;
Kurita, Mitsumasa;
Nishikawa, Jun-ichi;
Nishihara, Tsutomu

Publication type:

Article

Conditional and inducible transgene expression in mice through the combinatorial use of Cre-mediated recombination and tetracycline induction.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2765, doi. 10.1093/nar/gki559

By:

Belteki, Gusztav;
Haigh, Jody;
Kabacs, Nikolett;
Haigh, Katharina;
Sison, Karen;
Costantini, Frank;
Whitsett, Jeff;
Quaggin, Susan E.;
Nagy, Andras

Publication type:

Article

Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2764, doi. 10.1093/nar/gki558

By:

Yap, Yee Leng;
Wong, Maria P.;
Zhang, Xue Wu;
Hernandez, David;
Gras, Robin;
Smith, David K.;
Danchin, Antoine

Publication type:

Article

Molecular haplotyping by linking emulsion PCR: analysis of paraoxonase 1 haplotypes and phenotypes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2615, doi. 10.1093/nar/gki556

By:

Wetmur, James G.;
Kumar, Madhu;
Zhang, Li;
Palomeque, Caroline;
Wallenstein, Sylvan;
Chen, Jia

Publication type:

Article

ZAC, LIT1 (KCNQ1OT1) and p57KIP2 (CDKN1C) are in an imprinted gene network that may play a role in Beckwith–Wiedemann syndrome.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2650, doi. 10.1093/nar/gki555

By:

Arima, Takahiro;
Kamikihara, Tetsuya;
Hayashida, Toshirou;
Kato, Kiyoko;
Inoue, Toshiaki;
Shirayoshi, Yasuaki;
Oshimura, Mitsuo;
Soejima, Hidenobu;
Mukai, Tunehiro;
Wake, Norio

Publication type:

Article

Binding of pRNA to the N-terminal 14 amino acids of connector protein of bacteriophage phi29.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2640, doi. 10.1093/nar/gki554

By:

Xiao, Feng;
Moll, Wulf-Dieter;
Guo, Songchuan;
Guo, Peixuan

Publication type:

Article

The catalytic mechanism of hairpin ribozyme studied by hydrostatic pressure.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2557, doi. 10.1093/nar/gki552

By:

Tobé, Sylvia;
Heams, Thomas;
Vergne, Jacques;
Hervé, Guy;
Maurel, Marie-Christine

Publication type:

Article

An SOS-regulated operon involved in damage-inducible mutagenesis in Caulobacter crescentus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2603, doi. 10.1093/nar/gki551

By:

Galhardo, Rodrigo S.;
Rocha, Raquel P.;
Marques, Marilis V.;
Menck, Carlos F. M.

Publication type:

Article

How many clones need to be sequenced from a single forensic or ancient DNA sample in order to determine a reliable consensus sequence?

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2549, doi. 10.1093/nar/gki550

By:

Bower, Mim A.;
Spencer, Matthew;
Matsumura, Shuichi;
Nisbet, R. Ellen R.;
Howe, Christopher J.

Publication type:

Article

Activity of Lac repressor anchored to the Escherichia coli inner membrane.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2504, doi. 10.1093/nar/gki549

By:

Görke, Boris;
Reinhardt, Jana;
Rak, Bodo

Publication type:

Article

U1 small nuclear RNP from Trypanosoma brucei: a minimal U1 snRNA with unusual protein components.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2493, doi. 10.1093/nar/gki548

By:

Palfi, Zsofia;
Schimanski, Bernd;
Günzl, Arthur;
Lücke, Stephan;
Bindereif, Albrecht

Publication type:

Article

Selenocysteine insertion directed by the 3′-UTR SECIS element in Escherichia coli.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2486

By:

Su, Dan;
Li, Yehua;
Gladyshev, Vadim N.

Publication type:

Article

In vitro selection to identify determinants in tRNA for Bacillus subtilis tyrS T box antiterminator mRNA binding.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2595, doi. 10.1093/nar/gki546

By:

Fauzi, Hamid;
Jack, Karen D.;
Hines, Jennifer V.

Publication type:

Article

Nebulon: a system for the inference of functional relationships of gene products from the rearrangement of predicted operons.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2521, doi. 10.1093/nar/gki545

By:

Janga, Sarath Chandra;
Collado-Vides, Julio;
Moreno-Hagelsieb, Gabriel

Publication type:

Article

Alternative polyadenylation of cyclooxygenase-2.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2565, doi. 10.1093/nar/gki544

By:

Hall-Pogar, Tyra;
Zhang, Haibo;
Tian, Bin;
Lutz, Carol S.

Publication type:

Article

XRCC1 is required for DNA single-strand break repair in human cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2512, doi. 10.1093/nar/gki543

By:

Brem, Reto;
Hall, Janet

Publication type:

Article

Repair of cyclobutane pyrimidine dimers or dimethylsulfate damage in DNA is identical in normal or telomerase-immortalized human skin fibroblasts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2475, doi. 10.1093/nar/gki542

By:

Bates, Steven E.;
Zhou, Ning Ye;
Federico, Laura E.;
Xia, Liqun;
O'Connor, Timothy R.

Publication type:

Article

A benchmark of multiple sequence alignment programs upon structural RNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2433, doi. 10.1093/nar/gki541

By:

Gardner, Paul P.;
Wilm, Andreas;
Washietl, Stefan

Publication type:

Article

Studies on Escherichia coli RNase P RNA with Zn2+ as the catalytic cofactor.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2464, doi. 10.1093/nar/gki540

By:

Cuzic, Simona;
Hartmann, Roland K.

Publication type:

Article

The requirement of yeast replication origins for pre-replication complex proteins is modulated by transcription.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2410, doi. 10.1093/nar/gki539

By:

Nieduszynski, Conrad A.;
Blow, J. Julian;
Donaldson, Anne D.

Publication type:

Article

Cyclohexenyl nucleic acids: conformationally flexible oligonucleotides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2452, doi. 10.1093/nar/gki538

By:

Nauwelaerts, Koen;
Lescrinier, Eveline;
Sclep, Gert;
Herdewijn, Piet

Publication type:

Article

Modulating DNA bending affects NodD-mediated transcriptional control in Rhizobium leguminosarum.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2540, doi. 10.1093/nar/gki537

By:

Chen, Xiao-Chun;
Feng, Jie;
Hou, Bi-He;
Li, Feng-Qing;
Li, Qiang;
Hong, Guo-Fan

Publication type:

Article

A mathematical and computational framework for quantitative comparison and integration of large-scale gene expression data.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2580, doi. 10.1093/nar/gki536

By:

Hart, Christopher E.;
Sharenbroich, Lucas;
Bornstein, Benjamin J.;
Trout, Diane;
King, Brandon;
Mjolsness, Eric;
Wold, Barbara J.

Publication type:

Article

Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2395, doi. 10.1093/nar/gki535

By:

Lescoute, Aurélie;
Leontis, Neocles B.;
Massire, Christian;
Westhof, Eric

Publication type:

Article

Independent binding sites of small protein B onto transfer-messenger RNA during trans-translation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2384, doi. 10.1093/nar/gki534

By:

Metzinger, Laurent;
Hallier, Marc;
Felden, Brice

Publication type:

Article

Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2374, doi. 10.1093/nar/gki531

By:

Harrison, Paul M.;
Zheng, Deyou;
Zhang, Zhaolei;
Carriero, Nicholas;
Gerstein, Mark

Publication type:

Article

Inhibition of double-strand break non-homologous end-joining by cisplatin adducts in human cell extracts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 8, p. 2531, doi. 10.1093/nar/gki528

By:

Diggle, C. P.;
Bentley, J.;
Knowles, M. A.;
Kiltie, A. E.

Publication type:

Article