Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 6

Results: 44

Species-independent detection of RNA virus by representational difference analysis using non-ribosomal hexanucleotides for reverse transcription.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e65, doi. 10.1093/nar/gni064

By:

Endoh, Daiji;
Mizutani, Tetsuya;
Kirisawa, Rikio;
Maki, Yoshiyuki;
Saito, Hidetoshi;
Kon, Yasuhiro;
Morikawa, Shigeru;
Hayashi, Masanobu

Publication type:

Article

Proximity extension of circular DNA aptamers with real-time protein detection.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e64, doi. 10.1093/nar/gni063

By:

Di Giusto, Daniel A.;
Wlassoff, Wjatschesslaw A.;
Gooding, J. Justin;
Messerle, Barbara A.;
King, Garry C.

Publication type:

Article

Comparison of single regulated lentiviral vectors with rtTA expression driven by an autoregulatory loop or a constitutive promoter.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e63, doi. 10.1093/nar/gni062

By:

Markusic, David;
Oude-Elferink, Ronald;
Das, Atze T.;
Berkhout, Ben;
Seppen, Jurgen

Publication type:

Article

An RNA polymerase II construct synthesizes short-hairpin RNA with a quantitative indicator and mediates highly efficient RNAi.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e62, doi. 10.1093/nar/gni061

By:

Zhou, Hongxia;
Xia, Xu Gang;
Xu, Zuoshang

Publication type:

Article

An ultrasensitive site-specific DNA recombination assay based on dual-color fluorescence cross-correlation spectroscopy.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e60, doi. 10.1093/nar/gni060

By:

Jahnz, Michael;
Schwille, Petra

Publication type:

Article

Efficient and seamless DNA recombineering using a thymidylate synthase A selection system in Escherichia coli.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e59, doi. 10.1093/nar/gni059

By:

Wong, Queenie N. Y.;
Ng, Vivian C. W.;
Lin, Marie C. M.;
Kung, Hsiang-fu;
Chan, Danny;
Huang, Jian-Dong

Publication type:

Article

Removal of mismatched bases from synthetic genes by enzymatic mismatch cleavage.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e58, doi. 10.1093/nar/gni058

By:

Fuhrmann, Markus;
Oertel, Wolfgang;
Berthold, Peter;
Hegemann, Peter

Publication type:

Article

Determination of tumor necrosis factor receptor-associated factor trimerization in living cells by CFP→YFP→mRFP FRET detected by flow cytometry.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e61

By:

He, Liusheng;
Wu, Xiaoli;
Simone, James;
Hewgill, Derek;
Lipsky, Peter E.

Publication type:

Article

L1 retrotransposon-mediated stable gene silencing.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e57, doi. 10.1093/nar/gni056

By:

Yang, Nuo;
Zhang, Lin;
Kazazian, Haig H.

Publication type:

Article

Towards standardization of RNA quality assessment using user-independent classifiers of microcapillary electrophoresis traces.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e56, doi. 10.1093/nar/gni054

By:

Imbeaud, Sandrine;
Graudens, Esther;
Boulanger, Virginie;
Barlet, Xavier;
Zaborski, Patrick;
Eveno, Eric;
Mueller, Odilo;
Schroeder, Andreas;
Auffray, Charles

Publication type:

Article

Correcting errors in synthetic DNA through consensus shuffling.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e55, doi. 10.1093/nar/gni053

By:

Binkowski, Brock F.;
Richmond, Kathryn E.;
Kaysen, James;
Sussman, Michael R.;
Belshaw, Peter J.

Publication type:

Article

A GFP-based reporter system to monitor nonsense-mediated mRNA decay.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e54, doi. 10.1093/nar/gni052

By:

Paillusson, Alexandra;
Hirschi, Nadine;
Vallan, Claudio;
Azzalin, Claus M.;
Mühlemann, Oliver

Publication type:

Article

Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. e53, doi. 10.1093/nar/gni050

By:

Stekel, Dov J.;
Sarti, Donatella;
Trevino, Victor;
Zhang, Lihong;
Salmon, Mike;
Buckley, Chris D.;
Stevens, Mark;
Pallen, Mark J.;
Penn, Charles;
Falciani, Francesco

Publication type:

Article

Retropseudogenes derived from the human Ro/SS-A autoantigen-associated hY RNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2032, doi. 10.1093/nar/gki504

By:

Perreault, Jonathan;
Noël, Jean-François;
Brière, Francis;
Cousineau, Benoit;
Lucier, Jean-François;
Perreault, Jean-Pierre;
Boire, Gilles

Publication type:

Article

A novel cGUUAg tetraloop structure with a conserved yYNMGg-type backbone conformation from cloverleaf 1 of bovine enterovirus 1 RNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2003, doi. 10.1093/nar/gki501

By:

Ihle, Yvonne;
Ohlenschläger, Oliver;
Häfner, Sabine;
Duchardt, Elke;
Zacharias, Martin;
Seitz, Simone;
Zell, Roland;
Ramachandran, Ramadurai;
Görlach, Matthias

Publication type:

Article

Cyclic changes in the affinity of protein–DNA interactions drive the progression and regulate the outcome of the Tn10 transposition reaction.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1982, doi. 10.1093/nar/gki348

By:

Liu, Danxu;
Crellin, Paul;
Chalmers, Ronald

Publication type:

Article

Functional roles of 3′-terminal structures of template RNA during in vivo retrotransposition of non-LTR retrotransposon, R1Bm.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1993, doi. 10.1093/nar/gki347

By:

Anzai, Tomohiro;
Osanai, Mizuko;
Hamada, Mitsuhiro;
Fujiwara, Haruhiko

Publication type:

Article

Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1970, doi. 10.1093/nar/gki346

By:

Renisio, Jean-Guillaume;
Cosquer, Sylvain;
Cherrak, Ilham;
Antri, Saïd El;
Mauffret, Olivier;
Fermandjian, Serge

Publication type:

Article

Vertebrate telomere repeat DNAs favor external loop propeller quadruplex structures in the presence of high concentrations of potassium.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2022, doi. 10.1093/nar/gki345

By:

Rujan, Iulian N.;
Meleney, J. Carlin;
Bolton, Philip H.

Publication type:

Article

Substrate discrimination in RNase P RNA-mediated cleavage: importance of the structural environment of the RNase P cleavage site.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2012, doi. 10.1093/nar/gki344

By:

Kikovska, Ema;
Brännvall, Mathias;
Kufel, Joanna;
Kirsebom, Leif A.

Publication type:

Article

Mutational comparison of the single-domained APOBEC3C and double-domained APOBEC3F/G anti-retroviral cytidine deaminases provides insight into their DNA target site specificities.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1913, doi. 10.1093/nar/gki343

By:

Langlois, Marc-André;
Beale, Rupert C. L.;
Conticello, Silvestro G.;
Neuberger, Michael S.

Publication type:

Article

Site-specific reverse splicing of a HEG-containing group I intron in ribosomal RNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2042, doi. 10.1093/nar/gki341

By:

Birgisdottir, Åsa B.;
Johansen, Steinar

Publication type:

Article

Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2060, doi. 10.1093/nar/gki340

By:

Wei, Aguan;
Yuan, Alex;
Fawcett, Gloria;
Butler, Alice;
Davis, Theodore;
Xu, Shuang-yong;
Salkoff, Lawrence

Publication type:

Article

Regulation of Id2 expression by CCAAT/enhancer binding protein β.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1924, doi. 10.1093/nar/gki339

By:

Karaya, Kazuhiro;
Mori, Seiichi;
Kimoto, Hisashi;
Shima, Yoko;
Tsuji, Yoshihito;
Kurooka, Hisanori;
Akira, Shizuo;
Yokota, Yoshifumi

Publication type:

Article

Structure of HinP1I endonuclease reveals a striking similarity to the monomeric restriction enzyme MspI.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1892, doi. 10.1093/nar/gki337

By:

Yang, Zhe;
Horton, John R.;
Maunus, Robert;
Wilson, Geoffrey G.;
Roberts, Richard J.;
Cheng, Xiaodong

Publication type:

Article

Site-specific incorporation of N-(deoxyguanosin-8-yl)-2-acetylaminofluorene (dG-AAF) into oligonucleotides using modified ‘ultra-mild’ DNA synthesis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1961, doi. 10.1093/nar/gki335

By:

Gillet, Ludovic C. J.;
Alzeer, Jawad;
Schärer, Orlando D.

Publication type:

Article

Experimental RNomics in Aquifex aeolicus: identification of small non-coding RNAs and the putative 6S RNA homolog.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1949, doi. 10.1093/nar/gki334

By:

Willkomm, Dagmar K.;
Minnerup, Jens;
Hüttenhofer, Alexander;
Hartmann, Roland K.

Publication type:

Article

Tandem oligonucleotide synthesis using linker phosphoramidites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1940, doi. 10.1093/nar/gki333

By:

Pon, Richard T.;
Yu, Shuyuan

Publication type:

Article

The liver-enriched transcription factor CREB-H is a growth suppressor protein underexpressed in hepatocellular carcinoma.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1859, doi. 10.1093/nar/gki332

By:

Chin, King-Tung;
Zhou, Hai-Jun;
Wong, Chun-Ming;
Lee, Joyce Man-Fong;
Chan, Ching-Ping;
Qiang, Bo-Qin;
Yuan, Jian-Gang;
Ng, Irene Oi-lin;
Jin, Dong-Yan

Publication type:

Article

Torsional restraint: a new twist on frameshifting pseudoknots.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1825, doi. 10.1093/nar/gki329

By:

Plant, Ewan P.;
Dinman, Jonathan D.

Publication type:

Article

Comparative gene finding in chicken indicates that we are closing in on the set of multi-exonic widely expressed human genes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1935, doi. 10.1093/nar/gki328

By:

Castelo, Robert;
Reymond, Alexandre;
Wyss, Carine;
Câmara, Francisco;
Parra, Genís;
Antonarakis, Stylianos E.;
Guigó, Roderic;
Eyras, Eduardo

Publication type:

Article

Practical lessons from protein structure prediction.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1874, doi. 10.1093/nar/gki327

By:

Ginalski, Krzysztof;
Grishin, Nick V.;
Godzik, Adam;
Rychlewski, Leszek

Publication type:

Article

Srs2 and RecQ homologs cooperate in mei-3-mediated homologous recombination repair of Neurospora crassa.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1848, doi. 10.1093/nar/gki326

By:

Suzuki, Keiichiro;
Kato, Akihiro;
Sakuraba, Yoshiyuki;
Inoue, Hirokazu

Publication type:

Article

Dynamic relocalization of hOGG1 during the cell cycle is disrupted in cells harbouring the hOGG1-Cys326 polymorphic variant.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1813, doi. 10.1093/nar/gki325

By:

Luna, Luisa;
Rolseth, Veslemøy;
Hildrestrand, Gunn A.;
Otterlei, Marit;
Dantzer, Françoise;
Bjørås, Magnar;
Seeberg, Erling

Publication type:

Article

A computational study of off-target effects of RNA interference.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1834, doi. 10.1093/nar/gki324

By:

Qiu, Shibin;
Adema, Coen M.;
Lane, Terran

Publication type:

Article

Argonaute protein PIWI controls mobilization of retrotransposons in the Drosophila male germline.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 2052, doi. 10.1093/nar/gki323

By:

Kalmykova, Alla I.;
Klenov, Mikhail S.;
Gvozdev, Vladimir A.

Publication type:

Article

On the DNA cleavage mechanism of Type I restriction enzymes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1760, doi. 10.1093/nar/gki322

By:

Jindrova, Eva;
Schmid-Nuoffer, Stefanie;
Hamburger, Fabienne;
Janscak, Pavel;
Bickle, Thomas A.

Publication type:

Article

The archaeal eIF2 homologue: functional properties of an ancient translation initiation factor.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1804, doi. 10.1093/nar/gki321

By:

Pedullà, Nadia;
Palermo, Rocco;
Hasenöhrl, David;
Bläsi, Udo;
Cammarano, Piero;
Londei, Paola

Publication type:

Article

Polyamines preferentially interact with bent adenine tracts in double-stranded DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1790, doi. 10.1093/nar/gki319

By:

Lindemose, Søren;
Nielsen, Peter E.;
Møllegaard, Niels Erik

Publication type:

Article

Solution structure of a modified 2′,5′-linked RNA hairpin involved in an equilibrium with duplex.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1749, doi. 10.1093/nar/gki318

By:

Plevnik, Miha;
Gdaniec, Zofia;
Plavec, Janez

Publication type:

Article

Influence of the π–π interaction on the hydrogen bonding capacity of stacked DNA/RNA bases.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1779, doi. 10.1093/nar/gki317

By:

Mignon, Pierre;
Loverix, Stefan;
Steyaert, Jan;
Geerlings, Paul

Publication type:

Article

Conservation versus parallel gains in intron evolution.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1741, doi. 10.1093/nar/gki316

By:

Sverdlov, Alexander V.;
Rogozin, Igor B.;
Babenko, Vladimir N.;
Koonin, Eugene V.

Publication type:

Article

Post-synthetic and site-specific modification of endocyclic nitrogen atoms of purines in DNA and its potential for biological and structural studies.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1767, doi. 10.1093/nar/gki315

By:

Narukulla, Raman;
Shuker, David E. G.;
Xu, Yao-Zhong

Publication type:

Article

tRNA-linked molecular beacons for imaging mRNAs in the cytoplasm of living cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 6, p. 1902, doi. 10.1093/nar/gki302

By:

Mhlanga, Musa M.;
Vargas, Diana Y.;
Fung, Cindy W.;
Kramer, Fred Russell;
Tyagi, Sanjay

Publication type:

Article