Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 18

Results: 49

Partial 13C isotopic enrichment of nucleoside monophosphates: useful reporters for NMR structural studies.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e164, doi. 10.1093/nar/gni165

By:

Kishore, Anita I.;
Mayer, Michael R.;
Prestegard, James H.

Publication type:

Article

Gene Catchr—Gene Cloning And Tagging for Caenorhabditis elegans using yeast Homologous Recombination: a novel approach for the analysis of gene expression.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e163, doi. 10.1093/nar/gni164

By:

Sassi, Holly E.;
Renihan, Stephanie;
Spence, Andrew M.;
Cooperstock, Ramona L.

Publication type:

Article

Method for multiplex cellular detection of mRNAs using quantum dot fluorescent in situ hybridization.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e161, doi. 10.1093/nar/gni162

By:

Chan, PokMan;
Yuen, Tony;
Ruf, Frederique;
Gonzalez-Maeso, Javier;
Sealfon, Stuart C.

Publication type:

Article

Rapid detection of genomic imbalances using micro-arrays consisting of pooled BACs covering all human chromosome arms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e159, doi. 10.1093/nar/gni161

By:

Knijnenburg, Jeroen;
van der Burg, Marja;
Nilsson, Philomeen;
van Amstel, Hans Kristian Ploos;
Tanke, Hans;
Szuhai, Károly

Publication type:

Article

Improved methods for the generation of human gene knockout and knockin cell lines.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e158, doi. 10.1093/nar/gni160

By:

Topaloglu, Ozlem;
Hurley, Paula J.;
Yildirim, Ozlem;
Civin, Curt I.;
Bunz, Fred

Publication type:

Article

Transformation of expression intensities across generations of Affymetrix microarrays using sequence matching and regression modeling.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e157, doi. 10.1093/nar/gni159

By:

Bhattacharya, Soumyaroop;
Mariani, Thomas J.

Publication type:

Article

A simple method for displaying recalcitrant proteins on the surface of bacteriophage lambda.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e160, doi. 10.1093/nar/gni158

By:

Zanghi, Christine N.;
Lankes, Heather A.;
Bradel-Tretheway, Birgit;
Wegman, Jessica;
Dewhurst, Stephen

Publication type:

Article

Miniature RT–PCR system for diagnosis of RNA-based viruses.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e156, doi. 10.1093/nar/gni157

By:

Liao, Chia-Sheng;
Lee, Gwo-Bin;
Liu, Hsiao-Sheng;
Hsieh, Tsung-Min;
Luo, Ching-Hsing

Publication type:

Article

Integrative elements for Bacillus subtilis yielding tetracycline-dependent growth phenotypes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e153, doi. 10.1093/nar/gni154

By:

Bertram, Ralph;
Köstner, Martin;
Müller, Judith;
Ramos, José Vazquez;
Hillen, Wolfgang

Publication type:

Article

Shotgun haplotyping: a novel method for surveying allelic sequence variation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e152, doi. 10.1093/nar/gni152

By:

Lindsay, Sarah J.;
Bonfield, James K.;
Hurles, Matthew E.

Publication type:

Article

Proximity ligation assays with peptide conjugate ‘burrs’ for the sensitive detection of spores.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e162, doi. 10.1093/nar/gni150

By:

Pai, Supriya;
Ellington, Andrew D.;
Levy, Matthew

Publication type:

Article

A highly sensitive selection method for directed evolution of homing endonucleases.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e154, doi. 10.1093/nar/gni148

By:

Chen, Zhilei;
Zhao, Huimin

Publication type:

Article

An ES cell system for rapid, spatial and temporal analysis of gene function in vitro and in vivo.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e155, doi. 10.1093/nar/gni146

By:

Mao, Junhao;
Barrow, Jeffery;
McMahon, Jill;
Vaughan, Joe;
McMahon, Andrew P.

Publication type:

Article

A bi-functional siRNA construct induces RNA interference and also primes PCR amplification for its own quantification.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. e151, doi. 10.1093/nar/gni144

By:

Jiang, Ming;
Arzumanov, Andrey A.;
Gait, Michael J.;
Milner, Jo

Publication type:

Article

Facilitation of a structural transition in the polypurine/polypyrimidine tract within the proximal promoter region of the human VEGF gene by the presence of potassium and G-quadruplex-interactive agents.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6070, doi. 10.1093/nar/gki917

By:

Sun, Daekyu;
Guo, Kexiao;
Rusche, Jadrian J.;
Hurley, Laurence H.

Publication type:

Article

Zinc finger nucleases: custom-designed molecular scissors for genome engineering of plant and mammalian cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5978, doi. 10.1093/nar/gki912

By:

Durai, Sundar;
Mani, Mala;
Kandavelou, Karthikeyan;
Wu, Joy;
Porteus, Matthew H.;
Chandrasegaran, Srinivasan

Publication type:

Article

Predicting candidate genomic sequences that correspond to synthetic functional RNA motifs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6057, doi. 10.1093/nar/gki911

By:

Laserson, Uri;
Gan, Hin Hark;
Schlick, Tamar

Publication type:

Article

Function of the ribosomal E-site: a mutagenesis study.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6048, doi. 10.1093/nar/gki910

By:

Sergiev, Petr V.;
Lesnyak, Dmitry V.;
Kiparisov, Sergey V.;
Burakovsky, Dmitry E.;
Leonov, Andrei A.;
Bogdanov, Alexey A.;
Brimacombe, Richard;
Dontsova, Olga A.

Publication type:

Article

Cleavage of dsRNAs hyper-edited by ADARs occurs at preferred editing sites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5954, doi. 10.1093/nar/gki909

By:

Scadden, A. D. J.;
O'Connell, M. A.

Publication type:

Article

Specific function of a plastid sigma factor for ndhF gene transcription.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5991, doi. 10.1093/nar/gki908

By:

Favory, Jean-Jacques;
Kobayshi, Masanori;
Tanaka, Kan;
Peltier, Gilles;
Kreis, Martin;
Valay, Jean-Gabriel;
Lerbs-Mache, Silva

Publication type:

Article

Use of altered-specificity binding Oct-4 suggests an absence of pluripotent cell-specific cofactor usage.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6011, doi. 10.1093/nar/gki907

By:

Smith, Alexander E. F.;
Ford, Kevin G.

Publication type:

Article

Atomic force microscopy shows that vaccinia topoisomerase IB generates filaments on DNA in a cooperative fashion.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5945, doi. 10.1093/nar/gki906

By:

Moreno-Herrero, Fernando;
Holtzer, Laurent;
Koster, Daniel A.;
Shuman, Stewart;
Dekker, Cees;
Dekker, Nynke H.

Publication type:

Article

Alternative splicing and nonsense-mediated mRNA decay regulate mammalian ribosomal gene expression.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5965, doi. 10.1093/nar/gki905

By:

Cuccurese, Monica;
Russo, Giulia;
Russo, Annapina;
Pietropaolo, Concetta

Publication type:

Article

Induction of unique structural changes in guanine-rich DNA regions by the triazoloacridone C-1305, a topoisomerase II inhibitor with antitumor activities.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6034, doi. 10.1093/nar/gki904

By:

Lemke, Krzysztof;
Wojciechowski, Marcin;
Laine, William;
Bailly, Christian;
Colson, Pierre;
Baginski, Maciej;
Larsen, Annette K.;
Skladanowski, Andrzej

Publication type:

Article

The ErbB3 binding protein Ebp1 interacts with Sin3A to repress E2F1 and AR-mediated transcription.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6024, doi. 10.1093/nar/gki903

By:

Zhang, Yuexing;
Akinmade, Damilola;
Hamburger, Anne W.

Publication type:

Article

The RING finger ATPase Rad5p of Saccharomyces cerevisiae contributes to DNA double-strand break repair in a ubiquitin-independent manner.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5878, doi. 10.1093/nar/gki902

By:

Chen, Shuhua;
Davies, Adelina A.;
Sagan, Daniel;
Ulrich, Helle D.

Publication type:

Article

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5868, doi. 10.1093/nar/gki901

By:

Meissner, Alexander;
Gnirke, Andreas;
Bell, George W.;
Ramsahoye, Bernard;
Lander, Eric S.;
Jaenisch, Rudolf

Publication type:

Article

Switching DNA-binding specificity by unnatural amino acid substitution.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5896, doi. 10.1093/nar/gki899

By:

Maiti, Atanu;
Roy, Siddhartha

Publication type:

Article

Guanine tetraplex topology of human telomere DNA is governed by the number of (TTAGGG) repeats.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5851, doi. 10.1093/nar/gki898

By:

Vorlíčková, Michaela;
Chládková, Jana;
Kejnovská, Iva;
Fialová, Markéta;
Kypr, Jaroslav

Publication type:

Article

Depletion of TDP 43 overrides the need for exonic and intronic splicing enhancers in the human apoA-II gene.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6000, doi. 10.1093/nar/gki897

By:

Mercado, Pablo Arrisi;
Ayala, Youhna M.;
Romano, Maurizio;
Buratti, Emanuele;
Baralle, Francisco E.

Publication type:

Article

Draft versus finished sequence data for DNA and protein diagnostic signature development.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5838, doi. 10.1093/nar/gki896

By:

Gardner, Shea N.;
Lam, Marisa W.;
Smith, Jason R.;
Torres, Clinton L.;
Slezak, Tom R.

Publication type:

Article

Application of single molecule technology to rapidly map long DNA and study the conformation of stretched DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5829, doi. 10.1093/nar/gki895

By:

Phillips, Kevin M.;
Larson, Jonathan W.;
Yantz, Gregory R.;
D'Antoni, Christina M.;
Gallo, Michael V.;
Gillis, Kimberly A.;
Goncalves, Nuno M.;
Neely, Lori A.;
Gullans, Steven R.;
Gilmanshin, Rudolf

Publication type:

Article

Improvement in protein functional site prediction by distinguishing structural and functional constraints on protein family evolution using computational design.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5861, doi. 10.1093/nar/gki894

By:

Cheng, Gong;
Qian, Bin;
Samudrala, Ram;
Baker, David

Publication type:

Article

A genome-wide survey demonstrates widespread non-linear mRNA in expressed sequences from multiple species.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5904, doi. 10.1093/nar/gki893

By:

Dixon, Richard J.;
Eperon, Ian C.;
Hall, Laurence;
Samani, Nilesh J.

Publication type:

Article

8-Oxoguanine incorporation into DNA repeats in vitro and mismatch recognition by MutSα.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 6081, doi. 10.1093/nar/gki891

By:

Macpherson, Peter;
Barone, Flavia;
Maga, Giovanni;
Mazzei, Filomena;
Karran, Peter;
Bignami, Margherita

Publication type:

Article

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5914, doi. 10.1093/nar/gki890

By:

Barnes, Michael;
Freudenberg, Johannes;
Thompson, Susan;
Aronow, Bruce;
Pavlidis, Paul

Publication type:

Article

Pyrene is highly emissive when attached to the RNA duplex but not to the DNA duplex: the structural basis of this difference.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5887, doi. 10.1093/nar/gki889

By:

Nakamura, Mitsunobu;
Fukunaga, Yudai;
Sasa, Kazuhiro;
Ohtoshi, Yukinori;
Kanaori, Kenji;
Hayashi, Haruhisa;
Nakano, Hidehiko;
Yamana, Kazushige

Publication type:

Article

The physical determinants of the DNA conformational landscape: an analysis of the potential energy surface of single-strand dinucleotides in the conformational space of duplex DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5749, doi. 10.1093/nar/gki888

By:

Elsawy, Karim M.;
Hodgson, Michael K.;
Caves, Leo S. D.

Publication type:

Article

The essential WD-repeat protein Rsa4p is required for rRNA processing and intra-nuclear transport of 60S ribosomal subunits.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5728, doi. 10.1093/nar/gki887

By:

de la Cruz, Jesús;
Sanz-Martínez, Eloisa;
Remacha, Miguel

Publication type:

Article

Abundance of correctly folded RNA motifs in sequence space, calculated on computational grids.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5924, doi. 10.1093/nar/gki886

By:

Knight, Rob;
De Sterck, Hans;
Markel, Rob;
Smit, Sandra;
Oshmyansky, Alexander;
Yarus, Michael

Publication type:

Article

Specificity prediction of adenylation domains in nonribosomal peptide synthetases (NRPS) using transductive support vector machines (TSVMs).

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5799, doi. 10.1093/nar/gki885

By:

Rausch, Christian;
Weber, Tilmann;
Kohlbacher, Oliver;
Wohlleben, Wolfgang;
Huson, Daniel H.

Publication type:

Article

Conformation, protein recognition and repair of DNA interstrand and intrastrand cross-links of Antitumor trans-[PtCl2(NH3)(thiazole)].

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5819, doi. 10.1093/nar/gki884

By:

Marini, Victoria;
Christofis, Petros;
Novakova, Olga;
Kasparkova, Jana;
Farrell, Nicholas;
Brabec, Viktor

Publication type:

Article

DNA topoisomerase II interacts with Lim15/Dmc1 in meiosis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5809, doi. 10.1093/nar/gki883

By:

Iwabata, Kazuki;
Koshiyama, Akiyo;
Yamaguchi, Taiki;
Sugawara, Hiroko;
Hamada, Fumika N.;
Namekawa, Satoshi H.;
Ishii, Satomi;
Ishizaki, Takashi;
Chiku, Hiroyuki;
Nara, Takayuki;
Sakaguchi, Kengo

Publication type:

Article

Dominant-negative mutant phenotypes and the regulation of translation elongation factor 2 levels in yeast.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5740, doi. 10.1093/nar/gki882

By:

Ortiz, Pedro A.;
Kinzy, Terri Goss

Publication type:

Article

Two major branches of anti-cadmium defense in the mouse: MTF-1/metallothioneins and glutathione.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5715, doi. 10.1093/nar/gki881

By:

Wimmer, Ursula;
Wang, Ying;
Georgiev, Oleg;
Schaffner, Walter

Publication type:

Article

Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5936, doi. 10.1093/nar/gki879

By:

de Jésus, Karine Pereira;
Serre, Laurence;
Zelwer, Charles;
Castaing, Bertrand

Publication type:

Article

Molecular beacons as probes of RNA unfolding under native conditions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5763, doi. 10.1093/nar/gki877

By:

Hopkins, Julia F.;
Woodson, Sarah A.

Publication type:

Article

Protein–DNA binding specificity predictions with structural models.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5781, doi. 10.1093/nar/gki875

By:

Morozov, Alexandre V.;
Havranek, James J.;
Baker, David;
Siggia, Eric D.

Publication type:

Article

Chemical synthesis and thermodynamic characterization of oxanine-containing oligodeoxynucleotides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 18, p. 5771, doi. 10.1093/nar/gki865

By:

Pack, Seung Pil;
Nonogawa, Mitsuru;
Kodaki, Tsutomu;
Makino, Keisuke

Publication type:

Article