Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 15

Results: 39

Scoring schemes of palindrome clusters for more sensitive prediction of replication origins in herpesviruses.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e134, doi. 10.1093/nar/gni135

By:

Chew, David S. H.;
Choi, Kwok Pui;
Leung, Ming-Ying

Publication type:

Article

Direct isolation of specific RNA-interacting proteins using a novel affinity medium.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e132, doi. 10.1093/nar/gni133

By:

Liu, Ding-Gan;
Sun, Li

Publication type:

Article

Multiplex SNP typing by bioluminometric assay coupled with terminator incorporation (BATI).

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e133, doi. 10.1093/nar/gni132

By:

Zhou, Guo-Hua;
Gotou, Mari;
Kajiyama, Tomoharu;
Kambara, Hideki

Publication type:

Article

Detecting seeded motifs in DNA sequences.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e135, doi. 10.1093/nar/gni131

By:

Pizzi, Cinzia;
Bortoluzzi, Stefania;
Bisognin, Andrea;
Coppe, Alessandro;
Danieli, Gian Antonio

Publication type:

Article

Single small-interfering RNA expression vector for silencing multiple transforming growth factor-β pathway components.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e131, doi. 10.1093/nar/gni130

By:

Jazag, Amarsanaa;
Kanai, Fumihiko;
Ijichi, Hideaki;
Tateishi, Keisuke;
Ikenoue, Tsuneo;
Tanaka, Yasuo;
Ohta, Miki;
Imamura, Jun;
Guleng, Bayasi;
Asaoka, Yoshinari;
Kawabe, Takao;
Miyagishi, Makoto;
Taira, Kazunari;
Omata, Masao

Publication type:

Article

Rapid generation of long synthetic tandem repeats and its application for analysis in human artificial chromosome formation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e130, doi. 10.1093/nar/gni129

By:

Ebersole, Tom;
Okamoto, Yasuhide;
Noskov, Vladimir N.;
Kouprina, Natalay;
Kim, Jung-Hyun;
Leem, Sun-Hee;
Barrett, J. Carl;
Masumoto, Hiroshi;
Larionov, Vladimir

Publication type:

Article

Site-specific biotinylation of RNA molecules by transcription using unnatural base pairs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. e129, doi. 10.1093/nar/gni128

By:

Moriyama, Kei;
Kimoto, Michiko;
Mitsui, Tsuneo;
Yokoyama, Shigeyuki;
Hirao, Ichiro

Publication type:

Article

NEIL1 excises 3′ end proximal oxidative DNA lesions resistant to cleavage by NTH1 and OGG1.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4849, doi. 10.1093/nar/gki816

By:

Parsons, Jason L.;
Zharkov, Dmitry O.;
Dianov, Grigory L.

Publication type:

Article

An evolutionary intra-molecular shift in the preferred U3 snoRNA binding site on pre-ribosomal RNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4995, doi. 10.1093/nar/gki815

By:

Borovjagin, Anton V.;
Gerbi, Susan A.

Publication type:

Article

Quenched autoligation probes allow discrimination of live bacterial species by single nucleotide differences in rRNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4978, doi. 10.1093/nar/gki814

By:

Silverman, Adam P.;
Kool, Eric T.

Publication type:

Article

A thermodynamic approach to designing structure-free combinatorial DNA word sets.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4965, doi. 10.1093/nar/gki812

By:

Shortreed, Michael R.;
Chang, Seo Bong;
Hong, DongGee;
Phillips, Maggie;
Campion, Bridget;
Tulpan, Dan C.;
Andronescu, Mirela;
Condon, Anne;
Hoos, Holger H.;
Smith, Lloyd M.

Publication type:

Article

Biased exon/intron distribution of cryptic and de novo 3′ splice sites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4882, doi. 10.1093/nar/gki811

By:

Královičová, Jana;
Christensen, Mikkel B.;
Vořechovský, Igor

Publication type:

Article

Human vault-associated non-coding RNAs bind to mitoxantrone, a chemotherapeutic compound.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4874, doi. 10.1093/nar/gki809

By:

Gopinath, Subash C. B.;
Matsugami, Akimasa;
Katahira, Masato;
Kumar, Penmetcha K. R.

Publication type:

Article

Interactions between the archaeal Cdc6 and MCM proteins modulate their biochemical properties.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4940, doi. 10.1093/nar/gki807

By:

Kasiviswanathan, Rajesh;
Shin, Jae-Ho;
Kelman, Zvi

Publication type:

Article

Reduction of nucleosome assembly during new DNA synthesis impairs both major pathways of double-strand break repair.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4928, doi. 10.1093/nar/gki806

By:

Lewis, L. Kevin;
Karthikeyan, G.;
Cassiano, Jared;
Resnick, Michael A.

Publication type:

Article

Efficient isothermal expansion of human telomeric and minisatellite repeats by Thermococcus litoralis DNA polymerase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4922, doi. 10.1093/nar/gki803

By:

Hartig, Jörg S.;
Kool, Eric T.

Publication type:

Article

The Gumbel pre-factor k for gapped local alignment can be estimated from simulations of global alignment.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4987, doi. 10.1093/nar/gki800

By:

Sheetlin, Sergey;
Park, Yonil;
Spouge, John L.

Publication type:

Article

Coordinate control of cell cycle regulatory genes in zebrafish development tested by cyclin D1 knockdown with morpholino phosphorodiamidates and hydroxyprolyl-phosphono peptide nucleic acids.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4914, doi. 10.1093/nar/gki799

By:

Duffy, Kevin T.;
McAleer, Mary Frances;
Davidson, William R.;
Kari, Laszlo;
Kari, Csaba;
Liu, Chang-Gong;
Farber, Steven A.;
Cheng, Keith C.;
Mest, Jason R.;
Wickstrom, Eric;
Dicker, Adam P.;
Rodeck, Ulrich

Publication type:

Article

I-ApeI, a novel intron-encoded LAGLIDADG homing endonuclease from the archaeon, Aeropyrum pernix K1.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 5017, doi. 10.1093/nar/gki798

By:

Nomura, Norimichi;
Morinaga, Yayoi;
Shirai, Nobuaki;
Sako, Yoshihiko

Publication type:

Article

Involvement of KSRP in the post-transcriptional regulation of human iNOS expression–complex interplay of KSRP with TTP and HuR.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4813, doi. 10.1093/nar/gki797

By:

Linker, Katrin;
Pautz, Andrea;
Fechir, Marcel;
Hubrich, Thomas;
Greeve, Jobst;
Kleinert, Hartmut

Publication type:

Article

Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 5006, doi. 10.1093/nar/gki796

By:

Golan, Gali;
Zharkov, Dmitry O.;
Feinberg, Hadar;
Fernandes, Andrea S.;
Zaika, Elena I.;
Kycia, Jadwiga H.;
Grollman, Arthur P.;
Shoham, Gil

Publication type:

Article

Molecular details of quinolone–DNA interactions: solution structure of an unusually stable DNA duplex with covalently linked nalidixic acid residues and non-covalent complexes derived from it.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4838, doi. 10.1093/nar/gki795

By:

Siegmund, Karsten;
Maheshwary, Shruti;
Narayanan, Sukunath;
Connors, William;
Riedrich, Matthias;
Printz, Michael;
Richert, Clemens

Publication type:

Article

Interaction of Staufen1 with the 5′ end of mRNA facilitates translation of these RNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4797, doi. 10.1093/nar/gki794

By:

Dugré-Brisson, Samuel;
Elvira, George;
Boulay, Karine;
Chatel-Chaix, Laurent;
Mouland, Andrew J.;
DesGroseillers, Luc

Publication type:

Article

Identifying cooperative transcriptional regulations using protein–protein interactions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4828, doi. 10.1093/nar/gki793

By:

Nagamine, Nobuyoshi;
Kawada, Yuji;
Sakakibara, Yasubumi

Publication type:

Article

Limitations and potentials of current motif discovery algorithms.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4899

By:

Hu, Jianjun;
Li, Bin;
Kihara, Daisuke

Publication type:

Article

Subunit assembly modulates the activities of the Type III restriction–modification enzyme PstII in vitro.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4788, doi. 10.1093/nar/gki788

By:

Sears, Alice;
Szczelkun, Mark D.

Publication type:

Article

Characterization of the Type III restriction endonuclease PstII from Providencia stuartii.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4775, doi. 10.1093/nar/gki787

By:

Sears, Alice;
Peakman, Luke J.;
Wilson, Geoffrey G.;
Szczelkun, Mark D.

Publication type:

Article

Characterization of cis- and trans-acting elements in the imprinted human SNURF-SNRPN locus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4740, doi. 10.1093/nar/gki786

By:

Rodriguez-Jato, Sara;
Nicholls, Robert D.;
Driscoll, Daniel J.;
Yang, Thomas P.

Publication type:

Article

Tolerated wobble mutations in siRNAs decrease specificity, but can enhance activity in vivo.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4704, doi. 10.1093/nar/gki785

By:

Holen, Torgeir;
Moe, Svein Erik;
Sørbø, Jan Gunnar;
Meza, Trine J.;
Ottersen, Ole Petter;
Klungland, Arne

Publication type:

Article

A unique tRNA recognition mechanism of Caenorhabditis elegans mitochondrial EF-Tu2.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4683, doi. 10.1093/nar/gki784

By:

Suematsu, Takuma;
Sato, Aya;
Sakurai, Masayuki;
Watanabe, Kimitsuna;
Ohtsuki, Takashi

Publication type:

Article

Structural and functional characterizations of mung bean mitochondrial nucleoids.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4725, doi. 10.1093/nar/gki783

By:

Dai, Hwa;
Lo, Yih-Shan;
Litvinchuk, Alexandra;
Wang, Yuh-Tai;
Jane, Wann-Neng;
Hsiao, Lin-June;
Chiang, Kwen-Sheng

Publication type:

Article

Isolation of a small molecule inhibitor of DNA base excision repair.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4711, doi. 10.1093/nar/gki781

By:

Madhusudan, Srinivasan;
Smart, Fiona;
Shrimpton, Paul;
Parsons, Jason L.;
Gardiner, Laurence;
Houlbrook, Sue;
Talbot, Denis C.;
Hammonds, Timothy;
Freemont, Paul A.;
Sternberg, Michael J. E.;
Dianov, Grigory L.;
Hickson, Ian D.

Publication type:

Article

Characterization of SpPol4, a unique X-family DNA polymerase in Schizosaccharomyces pombe.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4762, doi. 10.1093/nar/gki780

By:

González-Barrera, Sergio;
Sánchez, Arancha;
Ruiz, José F.;
Juárez, Raquel;
Picher, Angel J.;
Terrados, Gloria;
Andrade, Paula;
Blanco, Luis

Publication type:

Article

Nucleotide modification at the γ-phosphate leads to the improved fidelity of HIV-1 reverse transcriptase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4865, doi. 10.1093/nar/gki779

By:

Mulder, Brent A.;
Anaya, Steve;
Yu, Peilin;
Lee, Keun Woo;
Nguyen, Anvy;
Murphy, Jason;
Willson, Richard;
Briggs, James M.;
Gao, Xiaolian;
Hardin, Susan H.

Publication type:

Article

Saccharomyces cerevisiae Mre11 is a high-affinity G4 DNA-binding protein and a G-rich DNA-specific endonuclease: implications for replication of telomeric DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4692, doi. 10.1093/nar/gki777

By:

Ghosal, Gargi;
Muniyappa, K.

Publication type:

Article

dSAP18 and dHDAC1 contribute to the functional regulation of the Drosophila Fab-7 element.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4857, doi. 10.1093/nar/gki776

By:

Canudas, Silvia;
Pérez, Silvia;
Fanti, Laura;
Pimpinelli, Sergio;
Singh, Navjot;
Hanes, Steven D.;
Azorín, Fernando;
Espinás, M. Lluïsa

Publication type:

Article

Distant sequences determine 5′ end formation of cox3 transcripts in Arabidopsis thaliana ecotype C24.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4673, doi. 10.1093/nar/gki774

By:

Forner, Joachim;
Weber, Bärbel;
Wiethölter, Caterina;
Meyer, Rhonda C.;
Binder, Stefan

Publication type:

Article

Thermodynamically based DNA strand design.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4951, doi. 10.1093/nar/gki773

By:

Tulpan, Dan;
Andronescu, Mirela;
Chang, Seo Bong;
Shortreed, Michael R.;
Condon, Anne;
Hoos, Holger H.;
Smith, Lloyd M.

Publication type:

Article

Specific roles of 5′ RNA secondary structures in stabilizing transcripts in chloroplasts.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 15, p. 4754, doi. 10.1093/nar/gki760

By:

Suay, Loreto;
Salvador, Maria L.;
Abesha, Emnet;
Klein, Uwe

Publication type:

Article