Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 13

Results: 55

Evaluation of multiple displacement amplification in a 5 cM STR genome-wide scan.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e119, doi. 10.1093/nar/gni126

By:

Dickson, Peter A.;
Montgomery, Grant W.;
Henders, Anjali;
Campbell, Megan J.;
Martin, Nicholas G.;
James, Michael R.

Publication type:

Article

An ultrasensitive photoelectrochemical nucleic acid biosensor.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e123, doi. 10.1093/nar/gni125

By:

Gao, Zhiqiang;
Tansil, Natalia C.

Publication type:

Article

SiteFinding-PCR: a simple and efficient PCR method for chromosome walking.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e122, doi. 10.1093/nar/gni124

By:

Tan, Guihong;
Gao, Yin;
Shi, Miao;
Zhang, Xinyue;
He, Shanping;
Chen, Zhangliang;
An, Chengcai

Publication type:

Article

Simultaneous detection of microsatellite repeats and SNPs in the macrophage migration inhibitory factor (MIF) gene by thin-film biosensor chips and application to rural field studies.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e121, doi. 10.1093/nar/gni123

By:

Zhong, Xiao-bo;
Leng, Lin;
Beitin, Anna;
Chen, Rui;
McDonald, Courtney;
Hsiao, Betty;
Jenison, Robert D.;
Kang, Insoo;
Park, Sung-Hwan;
Lee, Annette;
Gregersen, Peter;
Thuma, Philip;
Bray-Ward, Patricia;
Ward, David C.;
Bucala, Richard

Publication type:

Article

Characterization of zebrafish Rad52 and replication protein A for oligonucleotide-mediated mutagenesis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e120, doi. 10.1093/nar/gni122

By:

Takahashi, Nobuhiro;
Dawid, Igor B.

Publication type:

Article

Minimal cross-recombination between wild-type and loxP511 sites in vivo facilitates truncating both ends of large DNA inserts in pBACe3.6 and related vectors.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e118, doi. 10.1093/nar/gni119

By:

Shakes, Leighcraft A.;
Garland, Douglas M.;
Srivastava, Deepak K.;
Harewood, Ken R.;
Chatterjee, Pradeep K.

Publication type:

Article

I-ApeI: a novel intron-encoded LAGLIDADG homing endonuclease from the archaeon, Aeropyrum pernix K1.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e116, doi. 10.1093/nar/gni118

By:

Nomura, Norimichi;
Morinaga, Yayoi;
Shirai, Nobuaki;
Sako, Yoshihiko

Publication type:

Article

Nucleotide exchange and excision technology (NExT) DNA shuffling: a robust method for DNA fragmentation and directed evolution.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e117, doi. 10.1093/nar/gni116

By:

Müller, Kristian M.;
Stebel, Sabine C.;
Knall, Susanne;
Zipf, Gregor;
Bernauer, Hubert S.;
Arndt, Katja M.

Publication type:

Article

A novel PCR strategy for high-efficiency, automated site-directed mutagenesis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e110, doi. 10.1093/nar/gni115

By:

Wu, Wu;
Jia, Zongchao;
Liu, Ping;
Xie, Zhigang;
Wei, Qun

Publication type:

Article

Four new type I restriction enzymes identified in Escherichia coli clinical isolates.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e114, doi. 10.1093/nar/gni114

By:

Kasarjian, Julie K. A.;
Kodama, Yoshiaki;
Iida, Masatake;
Matsuda, Katsura;
Ryu, Junichi

Publication type:

Article

Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5′-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e112, doi. 10.1093/nar/gni113

By:

Ishikawa, Ken;
Watanabe, Miki;
Kuroita, Toshihiro;
Uchiyama, Ikuo;
Bujnicki, Janusz M.;
Kawakami, Bunsei;
Tanokura, Masaru;
Kobayashi, Ichizo

Publication type:

Article

Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e113, doi. 10.1093/nar/gni112

By:

Bae, Jin-Woo;
Rhee, Sung-Keun;
Nam, Young-Do;
Park, Yong-Ha

Publication type:

Article

Genome-wide selection of unique and valid oligonucleotides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e115, doi. 10.1093/nar/gni110

By:

Hyyrö, Heikki;
Juhola, Martti;
Vihinen, Mauno

Publication type:

Article

Cell-type-specific transcriptomics in chimeric models using transcriptome-based masks.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. e111, doi. 10.1093/nar/gni104

By:

Naef, Felix;
Huelsken, Joerg

Publication type:

Article

Human POL II promoter prediction: time series descriptors and machine learning.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4378, doi. 10.1093/nar/gki753

By:

Gangal, Rajeev;
Sharma, Pankaj

Publication type:

Article

The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4368, doi. 10.1093/nar/gki752

By:

Allemand, Frédéric;
Mathy, Nathalie;
Brechemier-Baey, Dominique;
Condon, Ciarán

Publication type:

Article

An Oct-1 binding site mediates activation of the gata2 promoter by BMP signaling.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4357, doi. 10.1093/nar/gki746

By:

Oren, Tal;
Torregroza, Ingrid;
Evans, Todd

Publication type:

Article

The proliferating cell nuclear antigen regulates retinoic acid receptor transcriptional activity through direct protein–protein interaction.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4311, doi. 10.1093/nar/gki745

By:

Martin, Perrine J.;
Lardeux, Virginie;
Lefebvre, Philippe

Publication type:

Article

Anti-HIV-1 activity of anti-TAR polyamide nucleic acid conjugated with various membrane transducing peptides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4345, doi. 10.1093/nar/gki743

By:

Tripathi, Snehlata;
Chaubey, Binay;
Ganguly, Sabyasachi;
Harris, Dylan;
Casale, Ralph A;
Pandey, Virendra N.

Publication type:

Article

Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4235, doi. 10.1093/nar/gki742

By:

Zick, Aviad;
Onn, Itay;
Bezalel, Rachel;
Margalit, Hanah;
Shlomai, Joseph

Publication type:

Article

CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4377, doi. 10.1093/nar/gki740

By:

Jegga, Anil G.;
Gupta, Ashima;
Gowrisankar, Sivakumar;
Deshmukh, Mrunal A.;
Connolly, Steven;
Finley, Kevin;
Aronow, Bruce J.

Publication type:

Article

miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4335, doi. 10.1093/nar/gki739

By:

Kim, You Jung;
Boyd, Andrew;
Athey, Brian D.;
Patel, Jignesh M.

Publication type:

Article

FAST DB: a website resource for the study of the expression regulation of human gene products.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4276, doi. 10.1093/nar/gki738

By:

de la Grange, Pierre;
Dutertre, Martin;
Martin, Natalia;
Auboeuf, Didier

Publication type:

Article

Large-scale structural analysis of the core promoter in mammalian and plant genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4255, doi. 10.1093/nar/gki737

By:

Florquin, Kobe;
Saeys, Yvan;
Degroeve, Sven;
Rouzé, Pierre;
Van de Peer, Yves

Publication type:

Article

Solution structure of the DNA-binding domain of RPA from Saccharomyces cerevisiae and its interaction with single-stranded DNA and SV40 T antigen.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4172, doi. 10.1093/nar/gki736

By:

Park, Chin-Ju;
Lee, Joon-Hwa;
Choi, Byong-Seok

Publication type:

Article

MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4164, doi. 10.1093/nar/gki735

By:

Thompson, Julie D.;
Holbrook, Stephen R.;
Katoh, Kazutaka;
Koehl, Patrice;
Moras, Dino;
Westhof, Eric;
Poch, Olivier

Publication type:

Article

GDNF-inducible zinc finger protein 1 is a sequence-specific transcriptional repressor that binds to the HOXA10 gene regulatory region.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4191, doi. 10.1093/nar/gki734

By:

Morinaga, Takatoshi;
Enomoto, Atsushi;
Shimono, Yohei;
Hirose, Fumiko;
Fukuda, Naoyuki;
Dambara, Atsushi;
Jijiwa, Mayumi;
Kawai, Kumi;
Hashimoto, Katsunori;
Ichihara, Masatoshi;
Asai, Naoya;
Murakumo, Yoshiki;
Matsuo, Seiichi;
Takahashi, Masahide

Publication type:

Article

Induction of transcription within chromosomal DNA loops flanked by MAR elements causes an association of loop DNA with the nuclear matrix.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4157, doi. 10.1093/nar/gki733

By:

Iarovaia, Olga V.;
Akopov, Sergey B.;
Nikolaev, Lev G.;
Sverdlov, Eugene D.;
Razin, Sergey V.

Publication type:

Article

Functional polarity is introduced by Dicer processing of short substrate RNAs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4140, doi. 10.1093/nar/gki732

By:

Rose, Scott D.;
Kim, Dong-Ho;
Amarzguioui, Mohammed;
Heidel, Jeremy D.;
Collingwood, Michael A.;
Davis, Mark E.;
Rossi, John J.;
Behlke, Mark A.

Publication type:

Article

An atypical RNA pseudoknot stimulator and an upstream attenuation signal for −1 ribosomal frameshifting of SARS coronavirus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4265

By:

Su, Mei-Chi;
Chang, Chung-Te;
Chu, Chiu-Hui;
Tsai, Ching-Hsiu;
Chang, Kung-Yao

Publication type:

Article

Specific binding of the methyl binding domain protein 2 at the BRCA1-NBR2 locus.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4243, doi. 10.1093/nar/gki729

By:

Auriol, Emilie;
Billard, Lise-Marie;
Magdinier, Frédérique;
Dante, Robert

Publication type:

Article

Contrasting effects of Elg1–RFC and Ctf18–RFC inactivation in the absence of fully functional RFC in fission yeast.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4078, doi. 10.1093/nar/gki728

By:

Kim, Jiyoung;
Robertson, Kathryn;
Mylonas, Katie J. L.;
Gray, Fiona C.;
Charapitsa, Iryna;
MacNeill, Stuart A.

Publication type:

Article

Cloning and characterization of the Schizosaccharomyces pombe homologs of the human protein Translin and the Translin-associated protein TRAX.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4128, doi. 10.1093/nar/gki727

By:

Laufman, Orly;
Yosef, Ron Ben;
Adir, Noam;
Manor, Haim

Publication type:

Article

Intercalator conjugates of pyrimidine locked nucleic acid-modified triplex-forming oligonucleotides: improving DNA binding properties and reaching cellular activities.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4223, doi. 10.1093/nar/gki726

By:

Brunet, Erika;
Corgnali, Maddalena;
Perrouault, Loïc;
Roig, Victoria;
Asseline, Ulysse;
Sørensen, Mads D.;
Babu, B. Ravindra;
Wengel, Jesper;
Giovannangeli, Carine

Publication type:

Article

Structural and DNA-binding studies on the bovine antimicrobial peptide, indolicidin: evidence for multiple conformations involved in binding to membranes and DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4053, doi. 10.1093/nar/gki725

By:

Hsu, Chun-Hua;
Chen, Chinpan;
Jou, Maou-Lin;
Lee, Alan Yueh-Luen;
Lin, Yu-Ching;
Yu, Yi-Ping;
Huang, Wei-Ting;
Wu, Shih-Hsiung

Publication type:

Article

Cooperative binding of DNA and CBFβ to the Runt domain of the CBFα studied via MD simulations.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4212, doi. 10.1093/nar/gki724

By:

Habtemariam, Bahru;
Anisimov, Victor M.;
MacKerell, Alexander D.

Publication type:

Article

Incorporation of non-nucleoside triphosphate analogues opposite to an abasic site by human DNA polymerases β and λ.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4117, doi. 10.1093/nar/gki723

By:

Crespan, Emmanuele;
Zanoli, Samantha;
Khandazhinskaya, Anastasiya;
Shevelev, Igor;
Jasko, Maxim;
Alexandrova, Ludmila;
Kukhanova, Marina;
Blanca, Giuseppina;
Villani, Giuseppe;
Hübscher, Ulrich;
Spadari, Silvio;
Maga, Giovanni

Publication type:

Article

Preferential binding of a G-quadruplex ligand to human chromosome ends.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4182, doi. 10.1093/nar/gki722

By:

Granotier, Christine;
Pennarun, Gaëlle;
Riou, Lydia;
Hoffschir, Françoise;
Gauthier, Laurent R.;
De Cian, Anne;
Gomez, Dennis;
Mandine, Eliane;
Riou, Jean-François;
Mergny, Jean-Louis;
Mailliet, Patrick;
Dutrillaux, Bernard;
Boussin, François D.

Publication type:

Article

Topological constraints in nucleic acid hybridization kinetics.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4090, doi. 10.1093/nar/gki721

By:

Bois, Justin S.;
Venkataraman, Suvir;
Choi, Harry M. T.;
Spakowitz, Andrew J.;
Wang, Zhen-Gang;
Pierce, Niles A.

Publication type:

Article

Transcription factor binding sites in the pol gene intragenic regulatory region of HIV-1 are important for virus infectivity.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4285, doi. 10.1093/nar/gki720

By:

Goffin, Véronique;
Demonté, Dominique;
Vanhulle, Caroline;
de Walque, Stéphane;
de Launoit, Yvan;
Burny, Arsène;
Collette, Yves;
Van Lint, Carine

Publication type:

Article

Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4040, doi. 10.1093/nar/gki718

By:

Han, Kyudong;
Sen, Shurjo K.;
Wang, Jianxin;
Callinan, Pauline A.;
Lee, Jungnam;
Cordaux, Richard;
Liang, Ping;
Batzer, Mark A.

Publication type:

Article

A host–guest approach for determining drug–DNA interactions: an example using netropsin.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4106, doi. 10.1093/nar/gki717

By:

Goodwin, Kristie D.;
Long, Eric C.;
Georgiadis, Millie M.

Publication type:

Article

Length-dependent energetics of (CTG)<sub>n</sub> and (CAG)<sub>n</sub> trinucleotide repeats.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4065, doi. 10.1093/nar/gki716

By:

Amrane, Samir;
Saccà, Barbara;
Mills, Martin;
Chauhan, Madhu;
Klump, Horst H.;
Mergny, Jean-Louis

Publication type:

Article

sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4096, doi. 10.1093/nar/gki715

By:

Livny, Jonathan;
Fogel, Michael A.;
Davis, Brigid M.;
Waldor, Matthew K.

Publication type:

Article

Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4016, doi. 10.1093/nar/gki714

By:

Khachane, Amit N.;
Timmis, Kenneth N.;
dos Santos, Vítor A. P. Martins

Publication type:

Article

Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4035, doi. 10.1093/nar/gki711

By:

Green, M. L.;
Karp, P. D.

Publication type:

Article

Functional studies on the ATM intronic splicing processing element.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4007, doi. 10.1093/nar/gki710

By:

Lewandowska, Marzena A.;
Stuani, Cristiana;
Parvizpur, Alireza;
Baralle, Francisco E.;
Pagani, Franco

Publication type:

Article

Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 3994, doi. 10.1093/nar/gki709

By:

Balaji, S.;
Babu, M. Madan;
Iyer, Lakshminarayan M.;
Aravind, L.

Publication type:

Article

Determination of protein–DNA binding constants and specificities from statistical analyses of single molecules: MutS–DNA interactions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 4322, doi. 10.1093/nar/gki708

By:

Yang, Yong;
Sass, Lauryn E.;
Du, Chunwei;
Hsieh, Peggy;
Erie, Dorothy A.

Publication type:

Article

Maternal disruption of Ube3a leads to increased expression of Ube3a-ATS in trans.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 13, p. 3976, doi. 10.1093/nar/gki705

By:

Landers, Miguel;
Calciano, Margaret A.;
Colosi, Dan;
Glatt-Deeley, Heather;
Wagstaff, Joseph;
Lalande, Marc

Publication type:

Article