Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 11

Results: 32

Immobilized stem–loop structured probes as conformational switches for enzymatic detection of microbial 16S rRNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e101, doi. 10.1093/nar/gni101

By:

Bockisch, Benjamin;
Grunwald, Thomas;
Spillner, Edzard;
Bredehorst, Reinhard

Publication type:

Article

Conditional knockdown of Fgfr2 in mice using Cre-LoxP induced RNA interference.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e102, doi. 10.1093/nar/gni100

By:

Coumoul, Xavier;
Shukla, Vivek;
Li, Cuiling;
Wang, Rui-Hong;
Deng, Chu-Xia

Publication type:

Article

High-throughput alternative splicing quantification by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e99, doi. 10.1093/nar/gni098

By:

McCullough, Ron M.;
Cantor, Charles R.;
Ding, Chunming

Publication type:

Article

Detection of single DNA molecules by multicolor quantum-dot end-labeling.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e98, doi. 10.1093/nar/gni097

By:

Crut, Aurélien;
Géron-Landre, Bénédicte;
Bonnet, Isabelle;
Bonneau, Stéphane;
Desbiolles, Pierre;
Escudé, Christophe

Publication type:

Article

Real-time investigation of nucleic acids phosphorylation process using molecular beacons.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e97, doi. 10.1093/nar/gni096

By:

Tang, Zhiwen;
Wang, Kemin;
Tan, Weihong;
Ma, Changbei;
Li, Jun;
Liu, Lingfeng;
Guo, Qiuping;
Meng, Xiangxian

Publication type:

Article

Enhanced microarray performance using low complexity representations of the transcriptome.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. e100, doi. 10.1093/nar/gni095

By:

Rondeau, Gaëlle;
McClelland, Michael;
Nguyen, Toan;
Risques, Rosana;
Wang, Yipeng;
Judex, Martin;
Cho, Ann H.;
Welsh, John

Publication type:

Article

Identification of mixed di-cation forms of G-quadruplex in solution.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3691, doi. 10.1093/nar/gki690

By:

Šket, Primož;
Črnugelj, Martin;
Plavec, Janez

Publication type:

Article

Archaeal Hel308 helicase targets replication forks in vivo and in vitro and unwinds lagging strands.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3678, doi. 10.1093/nar/gki685

By:

Guy, Colin P.;
Bolt, Edward L.

Publication type:

Article

Binding properties and evolution of homodimers in protein–protein interaction networks.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3629, doi. 10.1093/nar/gki678

By:

Ispolatov, Iaroslav;
Yuryev, Anton;
Mazo, Ilya;
Maslov, Sergei

Publication type:

Article

A T-stem slip in human mitochondrial tRNALeu(CUN) governs its charging capacity.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3606, doi. 10.1093/nar/gki677

By:

Hao, Rui;
Zhao, Ming-Wei;
Hao, Zhan-Xi;
Yao, Yong-Neng;
Wang, En-Duo

Publication type:

Article

Identification of novel restriction endonuclease-like fold families among hypothetical proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3598, doi. 10.1093/nar/gki676

By:

Kinch, Lisa N.;
Ginalski, Krzysztof;
Rychlewski, Leszek;
Grishin, Nick V.

Publication type:

Article

Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3636, doi. 10.1093/nar/gki675

By:

Wen, Tingyi;
Oussenko, Irina A.;
Pellegrini, Olivier;
Bechhofer, David H.;
Condon, Ciarán

Publication type:

Article

Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3614, doi. 10.1093/nar/gki674

By:

Neuwald, Andrew F.

Publication type:

Article

MutS inhibits RecA-mediated strand transfer with methylated DNA substrates.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3591, doi. 10.1093/nar/gki673

By:

Calmann, Melissa A.;
Evans, James E.;
Marinus, M. G.

Publication type:

Article

Distinct regions of RPB11 are required for heterodimerization with RPB3 in human and yeast RNA polymerase II.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3582, doi. 10.1093/nar/gki672

By:

Benga, Wagane J.;
Grandemange, Sylvie;
Shpakovski, George V.;
Shematorova, Elena K.;
Kedinger, Claude;
Vigneron, Marc

Publication type:

Article

Secondary structural characterization of oligonucleotide strands using electrospray ionization mass spectrometry.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3659, doi. 10.1093/nar/gki671

By:

Guo, Xinhua;
Bruist, Michael F.;
Davis, Darryl L.;
Bentzley, Catherine M.

Publication type:

Article

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3644, doi. 10.1093/nar/gki670

By:

Gladitz, John;
Shen, Kai;
Antalis, Patricia;
Hu, Fen Ze;
Post, J. Christopher;
Ehrlich, Garth D.

Publication type:

Article

A computer program for the estimation of protein and nucleic acid sequence diversity in random point mutagenesis libraries.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3667, doi. 10.1093/nar/gki669

By:

Volles, Michael J.;
Lansbury, Peter T.

Publication type:

Article

Human microRNA prediction through a probabilistic co-learning model of sequence and structure.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3570, doi. 10.1093/nar/gki668

By:

Nam, Jin-Wu;
Shin, Ki-Roo;
Han, Jinju;
Lee, Yoontae;
Kim, V. Narry;
Zhang, Byoung-Tak

Publication type:

Article

EID3 is a novel EID family member and an inhibitor of CBP-dependent co-activation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3561, doi. 10.1093/nar/gki667

By:

Båvner, Ann;
Matthews, Jason;
Sanyal, Sabyasachi;
Gustafsson, Jan-Åke;
Treuter, Eckardt

Publication type:

Article

Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3529, doi. 10.1093/nar/gki666

By:

Ivanova, Natalia;
Pavlov, Michael Y.;
Bouakaz, Elli;
Ehrenberg, Måns;
Schiavone, Lovisa Holmberg

Publication type:

Article

PCNA acts as a stationary loading platform for transiently interacting Okazaki fragment maturation proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3521, doi. 10.1093/nar/gki665

By:

Sporbert, Anje;
Domaing, Petra;
Leonhardt, Heinrich;
Cardoso, M. Cristina

Publication type:

Article

Polyamines stimulate the formation of mutagenic 1,N2-propanodeoxyguanosine adducts from acetaldehyde.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3513, doi. 10.1093/nar/gki661

By:

Theruvathu, Jacob A.;
Jaruga, Pawel;
Nath, Raghu G.;
Dizdaroglu, Miral;
Brooks, P. J.

Publication type:

Article

Triplex-induced recombination and repair in the pyrimidine motif.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3492, doi. 10.1093/nar/gki659

By:

Kalish, Jennifer M.;
Seidman, Michael M.;
Weeks, Daniel L.;
Glazer, Peter M.

Publication type:

Article

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3479, doi. 10.1093/nar/gki658

By:

Qian, Jiang;
Esumi, Noriko;
Chen, Yangjian;
Wang, Qingliang;
Chowers, Itay;
Zack, Donald J.

Publication type:

Article

Thermolytic CpG-containing DNA oligonucleotides as potential immunotherapeutic prodrugs.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3550, doi. 10.1093/nar/gki657

By:

Grajkowski, Andrzej;
Pedras-Vasconcelos, Joao;
Wang, Vivian;
Ausín, Cristina;
Hess, Sonja;
Verthelyi, Daniela;
Beaucage, Serge L.

Publication type:

Article

A deoxyribozyme that synthesizes 2′,5′-branched RNA with any branch-site nucleotide.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3503, doi. 10.1093/nar/gki656

By:

Pratico, Elizabeth D.;
Wang, Yangming;
Silverman, Scott K.

Publication type:

Article

The 5′-AT-rich half-site of Maf recognition element: a functional target for bZIP transcription factor Maf.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3465, doi. 10.1093/nar/gki653

By:

Yoshida, Tomonori;
Ohkumo, Tsuyoshi;
Ishibashi, Shoko;
Yasuda, Kunio

Publication type:

Article

Monitoring tat peptide binding to TAR RNA by solid-state 31P–19F REDOR NMR.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3447, doi. 10.1093/nar/gki626

By:

Olsen, Greg L.;
Edwards, Thomas E.;
Deka, Pritilekha;
Varani, Gabriele;
Sigurdsson, Snorri Th.;
Drobny, Gary P.

Publication type:

Article

SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3455, doi. 10.1093/nar/gki643

By:

Price, Thomas S.;
Regan, Regina;
Mott, Richard;
Hedman, Åsa;
Honey, Ben;
Daniels, Rachael J.;
Smith, Lee;
Greenfield, Andy;
Tiganescu, Ana;
Buckle, Veronica;
Ventress, Nicki;
Ayyub, Helena;
Salhan, Anita;
Pedraza-Diaz, Susana;
Broxholme, John;
Ragoussis, Jiannis;
Higgs, Douglas R.;
Flint, Jonathan;
Knight, Samantha J. L.

Publication type:

Article

A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3698

By:

Du, Quan;
Thonberg, Håkan;
Wang, Jue;
Wahlestedt, Claes;
Liang, Zicai

Publication type:

Article

Matrix metalloproteinase-1 up-regulation by hepatocyte growth factor in human dermal fibroblasts via ERK signaling pathway involves Ets1 and Fli1.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 11, p. 3540, doi. 10.1093/nar/gki648

By:

Jinnin, Masatoshi;
Ihn, Hironobu;
Mimura, Yoshihiro;
Asano, Yoshihide;
Yamane, Kenichi;
Tamaki, Kunihiko

Publication type:

Article

Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 11

Immobilized stem–loop structured probes as conformational switches for enzymatic detection of microbial 16S rRNA.

Conditional knockdown of Fgfr2 in mice using Cre-LoxP induced RNA interference.

High-throughput alternative splicing quantification by primer extension and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.

Detection of single DNA molecules by multicolor quantum-dot end-labeling.

Real-time investigation of nucleic acids phosphorylation process using molecular beacons.

Enhanced microarray performance using low complexity representations of the transcriptome.

Identification of mixed di-cation forms of G-quadruplex in solution.

Archaeal Hel308 helicase targets replication forks in vivo and in vitro and unwinds lagging strands.

Binding properties and evolution of homodimers in protein–protein interaction networks.

A T-stem slip in human mitochondrial tRNA<sup>Leu</sup>(CUN) governs its charging capacity.

Identification of novel restriction endonuclease-like fold families among hypothetical proteins.

Ribonuclease PH plays a major role in the exonucleolytic maturation of CCA-containing tRNA precursors in Bacillus subtilis.

Evolutionary clues to eukaryotic DNA clamp-loading mechanisms: analysis of the functional constraints imposed on replication factor C AAA+ ATPases.

MutS inhibits RecA-mediated strand transfer with methylated DNA substrates.

Distinct regions of RPB11 are required for heterodimerization with RPB3 in human and yeast RNA polymerase II.

Secondary structural characterization of oligonucleotide strands using electrospray ionization mass spectrometry.

Codon usage comparison of novel genes in clinical isolates of Haemophilus influenzae.

A computer program for the estimation of protein and nucleic acid sequence diversity in random point mutagenesis libraries.

Human microRNA prediction through a probabilistic co-learning model of sequence and structure.

EID3 is a novel EID family member and an inhibitor of CBP-dependent co-activation.

Mapping the interaction of SmpB with ribosomes by footprinting of ribosomal RNA.

PCNA acts as a stationary loading platform for transiently interacting Okazaki fragment maturation proteins.

Polyamines stimulate the formation of mutagenic 1,N<sup>2</sup>-propanodeoxyguanosine adducts from acetaldehyde.

Triplex-induced recombination and repair in the pyrimidine motif.

Identification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.

Thermolytic CpG-containing DNA oligonucleotides as potential immunotherapeutic prodrugs.

A deoxyribozyme that synthesizes 2′,5′-branched RNA with any branch-site nucleotide.

The 5′-AT-rich half-site of Maf recognition element: a functional target for bZIP transcription factor Maf.

Monitoring tat peptide binding to TAR RNA by solid-state <sup>31</sup>P–<sup>19</sup>F REDOR NMR.

SW-ARRAY: a dynamic programming solution for the identification of copy-number changes in genomic DNA using array comparative genome hybridization data.

A systematic analysis of the silencing effects of an active siRNA at all single-nucleotide mismatched target sites.

Matrix metalloproteinase-1 up-regulation by hepatocyte growth factor in human dermal fibroblasts via ERK signaling pathway involves Ets1 and Fli1.