Works matching IS 03051048 AND DT 2005 AND VI 33 AND IP 1

Results: 54

BiSearch: primer-design and search tool for PCR on bisulfite-treated genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e9

By:

Tusnßdy, Gßbor E.;
Simon, Istvßn;
Vßradi, Andrßs;
Arßnyi, Tamßs

Publication type:

Article

Covalent antibody display—an in vitro antibody-DNA library selection system.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e10, doi. 10.1093/nar/gni010

By:

Reiersen, Herald;
L°bersli, Inger;
L°set, Geir Ê.;
Hvattum, Else;
Simonsen, Bj°rg;
Stacy, John E.;
McGregor, Duncan;
FitzGerald, Kevin;
Welschof, Martin;
Brekke, Ole H.;
Marvik, Ole J.

Publication type:

Article

Use of a restriction enzyme-digested PCR product as substrate for helicase assays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e8, doi. 10.1093/nar/gni009

By:

Shin, Jae-Ho;
Reeve, John N.;
Kelman, Zvi

Publication type:

Article

Mapping the B-A conformational transition along plasmid DNA.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e5

By:

Nejedlý, Karel;
Chládková, Jana;
Vorlčkov´, Michaela;
Hrabcová, Iva;
Kypr, Jaroslav

Publication type:

Article

Non-cross-linking gold nanoparticle aggregation as a detection method for single-base substitutions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e4, doi. 10.1093/nar/gni007

By:

Sato, Kae;
Hosokawa, Kazuo;
Maeda, Mizuo

Publication type:

Article

Conditional UAS-targeted repression in Drosophila.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e7, doi. 10.1093/nar/gni006

By:

Pascual, Alberto;
Huang, Kai-Lian;
Preat, Thomas

Publication type:

Article

ArrayOme: a program for estimating the sizes of microarray-visualized bacterial genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e3

By:

Ou, Hong-Yu;
Smith, Rebecca;
Lucchini, Sacha;
Hinton, Jay;
Chaudhuri, Roy R.;
Pallen, Mark;
Barer, Michael R.;
Rajakumar, Kumar

Publication type:

Article

Detection and characterization of horizontal transfers in prokaryotes using genomic signature.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e6, doi. 10.1093/nar/gni004

By:

Dufraigne, Christine;
Fertil, Bernard;
Lespinats, Sylvain;
Giron, Alain;
Deschavanne, Patrick

Publication type:

Article

Detection and discovery of RNA modifications using microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e2, doi. 10.1093/nar/gni002

By:

Hiley, Shawna L.;
Jackman, Jane;
Babak, Tomas;
Trochesset, Miles;
Morris, Quaid D.;
Phizicky, Eric;
Hughes, Timothy R.

Publication type:

Article

Rapid, solid-phase based automated analysis of chromatin structure and transcription factor occupancy in living eukaryotic cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. e1, doi. 10.1093/nar/gni001

By:

Ingram, Richard;
Tagoh, Hiromi;
Riggs, Arthur D.;
Bonifer, Constanze

Publication type:

Article

HOPPSIGEN: a database of human and mouse processed pseudogenes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 448, doi. 10.1093/nar/gki217

By:

Adel, Khelifi;
Laurent, Durent;
Dominique, Mouchiroud

Publication type:

Article

FESD: a Functional Element SNPs Database in human.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 449, doi. 10.1093/nar/gki216

By:

Kang, Hyo Jin;
Choi, Kyoung Oak;
Kim, Byung-Dong;
Kim, Sangsoo;
Kim, Young Joo

Publication type:

Article

Locked nucleic acid (LNA) mediated improvements in siRNA stability and functionality.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 439

By:

Elmén, Joacim;
Thonberg, Hakan;
Ljungberg, Karl;
Frieden, Miriam;
Westergaard, Majken;
Xu, Yunhe;
Wahren, Britta;
Liang, Zicai;
Urum, Henrik;
Koch, Troels;
Wahlestedt, Claes

Publication type:

Article

Probing the DNA kink structure induced by the hyperthermophilic chromosomal protein Sac7d.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 430, doi. 10.1093/nar/gki191

By:

Chen, Chin-Yu;
Ko, Tzu-Ping;
Lin, Ting-Wan;
Chou, Chia-Cheng;
Chen, Chun-Jung;
Wang, Andrew H.-J.

Publication type:

Article

Translocation of XRCC1 and DNA ligase IIIα from centrosomes to chromosomes in response to DNA damage in mitotic human cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 422, doi. 10.1093/nar/gki190

By:

Okano, Satoshi;
Lan, Li;
Tomkinson, Alan E.;
Yasui, Akira

Publication type:

Article

The BRCT domain of mammalian Rev1 is involved in regulating DNA translesion synthesis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 356, doi. 10.1093/nar/gki189

By:

Jansen, Jacob G.;
Tsaalbi-Shtylik, Anastasia;
Langerak, Petra;
Calléja, Fabienne;
Meijers, Caro M.;
Jacobs, Heinz;
de Wind, Niels

Publication type:

Article

Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 409, doi. 10.1093/nar/gki188

By:

Yap, Yee Leng;
Wong, Maria P.;
Zhang, Xue Wu;
Hernandez, David;
Gras, Robin;
Smith, David K.;
Danchin, Antoine

Publication type:

Article

RDE-2 interacts with MUT-7 to mediate RNA interference in Caenorhabditis elegans.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 347, doi. 10.1093/nar/gki183

By:

Tops, Bastiaan B. J.;
Tabara, Hiroaki;
Sijen, Titia;
Simmer, Femke;
Mello, Craig C.;
Plasterk, Ronald H. A.;
Ketting, René F.

Publication type:

Article

Destabilization of tetranucleotide repeats in Haemophilus influenzae mutants lacking RnaseHI or the Klenow domain of PolI.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 400, doi. 10.1093/nar/gki180

By:

Bayliss, Christopher D.;
Sweetman, Wendy A.;
Moxon, E. Richard

Publication type:

Article

Multiple promoters are a common feature of mitochondrial genes in Arabidopsis.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 337

By:

Kuhn, Kristina;
Weihe, Andreas;
Borner, Thomas

Publication type:

Article

The histone deacetylase inhibitor trichostatin A alters the pattern of DNA replication origin activity in human cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 325, doi. 10.1093/nar/gki177

By:

Kemp, Michael G.;
Ghosh, Maloy;
Liu, Guoqi;
Leffak, Michael

Publication type:

Article

Functional domains of the Xenopus replication licensing factor Cdt1.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 316, doi. 10.1093/nar/gki176

By:

Ferenbach, Andrew;
Li, Anatoliy;
Brito-Martins, Marta;
Blow, J. Julian

Publication type:

Article

Probing a rate-limiting step by mutational perturbation of AdoMet binding in the HhaI methyltransferase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 307, doi. 10.1093/nar/gki175

By:

Merkienė, Eglė;
Klimašauskas, Saulius

Publication type:

Article

Plant tRNA ligases are multifunctional enzymes that have diverged in sequence and substrate specificity from RNA ligases of other phylogenetic origins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 388, doi. 10.1093/nar/gki174

By:

Englert, Markus;
Beier, Hildburg

Publication type:

Article

APE1 overexpression in XRCC1-deficient cells complements the defective repair of oxidative single strand breaks but increases genomic instability.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 298, doi. 10.1093/nar/gki173

By:

Sossou, Marguerite;
Flohr-Beckhaus, Claudia;
Schulz, Ina;
Daboussi, Fayza;
Epe, Bernd;
Radicella, J. Pablo

Publication type:

Article

Deficiency in 3′-phosphoglycolate processing in human cells with a hereditary mutation in tyrosyl-DNA phosphodiesterase (TDP1).

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 289, doi. 10.1093/nar/gki170

By:

Zhou, Tong;
Lee, Jae Wan;
Tatavarthi, Haritha;
Lupski, James R.;
Valerie, Kristoffer;
Povirk, Lawrence F.

Publication type:

Article

Serum-deprivation stimulates cap-binding by PARN at the expense of eIF4E, consistent with the observed decrease in mRNA stability.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 376, doi. 10.1093/nar/gki169

By:

Seal, Ruth;
Temperley, Richard;
Wilusz, Jeffrey;
Lightowlers, Robert N.;
Chrzanowska-Lightowlers, Zofia M. A.

Publication type:

Article

The accumulation of MMS-induced single strand breaks in G1 phase is recombinogenic in DNA polymerase β defective mammalian cells.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 280, doi. 10.1093/nar/gki168

By:

Pascucci, Barbara;
Russo, Maria Teresa;
Crescenzi, Marco;
Bignami, Margherita;
Dogliotti, Eugenia

Publication type:

Article

Inferring combinatorial regulation of transcription in silico.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 272

By:

Bluthgen, Nils;
Kiełbasa, Szymon M.;
Herzel, Hanspeter

Publication type:

Article

Processing of a complex multiply damaged DNA site by human cell extracts and purified repair proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 260, doi. 10.1093/nar/gki165

By:

Eot-Houllier, Grégory;
Eon-Marchais, Séverine;
Gasparutto, Didier;
Sage, Evelyne

Publication type:

Article

Inhibition of HIV-1 gene expression by retroviral vector-mediated small-guide RNAs that direct specific RNA cleavage by tRNase ZL.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 235, doi. 10.1093/nar/gki164

By:

Habu, Yuichiro;
Miyano-Kurosaki, Naoko;
Kitano, Michiko;
Endo, Yumihiko;
Yukita, Masakazu;
Ohira, Shigeru;
Takaku, Hiroaki;
Nashimoto, Masayuki;
Takaku, Hiroshi

Publication type:

Article

Comparative study of sequence-dependent hybridization kinetics in solution and on microspheres.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 366, doi. 10.1093/nar/gki163

By:

Sekar, Michael M. A.;
Bloch, Will;
St John, Pamela M.

Publication type:

Article

Accuracy of structure-derived properties in simple comparative models of protein structures.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 244, doi. 10.1093/nar/gki162

By:

Chakravarty, Suvobrata;
Wang, Lei;
Sanchez, Roberto

Publication type:

Article

GM-CSF promoter chromatin remodelling and gene transcription display distinct signal and transcription factor requirements.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 225, doi. 10.1093/nar/gki161

By:

Brettingham-Moore, Kate H.;
Rao, Sudha;
Juelich, Torsten;
Shannon, M. Frances;
Holloway, Adele F.

Publication type:

Article

i-motif solution structure and dynamics of the d(AACCCC) and d(CCCCAA) tetrahymena telomeric repeats.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 213, doi. 10.1093/nar/gki160

By:

Esmaili, Narcisse;
Leroy, Jean Louis

Publication type:

Article

MAP2: multiple alignment of syntenic genomic sequences.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 162

By:

Ye, Liang;
Huang, Xiaoqiu

Publication type:

Article

A large-scale analysis of mRNA polyadenylation of human and mouse genes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 201, doi. 10.1093/nar/gki158

By:

Tian, Bin;
Hu, Jun;
Zhang, Haibo;
Lutz, Carol S.

Publication type:

Article

Differential activation of DNA-PK based on DNA strand orientation and sequence bias.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 152, doi. 10.1093/nar/gki157

By:

Pawelczak, Katherine S.;
Andrews, Brooke J.;
Turchi, John J.

Publication type:

Article

Condensation of oligonucleotides assembled into nicked and gapped duplexes: potential structures for oligonucleotide delivery.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 143, doi. 10.1093/nar/gki156

By:

Sarkar, Tumpa;
Conwell, Christine C.;
Harvey, Lilia C.;
Santai, Catherine T.;
Hud, Nicholas V.

Publication type:

Article

Translation of stable hepadnaviral mRNA cleavage fragments induced by the action of phosphorothioate-modified antisense oligodeoxynucleotides.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 114, doi. 10.1093/nar/gki155

By:

Hasselblatt, Peter;
Hockenjos, Birgit;
Thoma, Christian;
Blum, Hubert E.;
Offensperger, Wolf-Bernhard

Publication type:

Article

Effects of camptothecin on double-strand break repair by non-homologous end-joining in DNA mismatch repair-deficient human colorectal cancer cell lines.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 106, doi. 10.1093/nar/gki154

By:

Jacob, Sandrine;
Miquel, Catherine;
Sarasin, Alain;
Praz, Francoise

Publication type:

Article

The RNA ligands for mouse proline-rich RNA-binding protein (mouse Prrp) contain two consensus sequences in separate loop structure.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 190, doi. 10.1093/nar/gki153

By:

Hori, Tamaki;
Taguchi, Yusuke;
Uesugi, Seiichi;
Kurihara, Yasuyuki

Publication type:

Article

Significant expansion of exon-bordering protein domains during animal proteome evolution.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 95, doi. 10.1093/nar/gki152

By:

Liu, Mingyi;
Walch, Heiko;
Wu, Shaoping;
Grigoriev, Andrei

Publication type:

Article

Site-specific labeling of the ribosome for single-molecule spectroscopy.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 182, doi. 10.1093/nar/gki151

By:

Dorywalska, Magdalena;
Blanchard, Scott C.;
Gonzalez, Ruben L.;
Kim, Harold D.;
Chu, Steven;
Puglisi, Joseph D.

Publication type:

Article

Functional roles of carboxylate residues comprising the DNA polymerase active site triad of Ty3 reverse transcriptase.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 171, doi. 10.1093/nar/gki150

By:

Bibillo, Arkadiusz;
Lener, Daniela;
Klarmann, George J.;
Le Grice, Stuart F. J.

Publication type:

Article

Isolation and characterization of a thermostable RNA ligase 1 from a Thermus scotoductus bacteriophage TS2126 with good single-stranded DNA ligation properties.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 135, doi. 10.1093/nar/gki149

By:

Blondal, Thorarinn;
Thorisdottir, Audur;
Unnsteinsdottir, Unnur;
Hjorleifsdottir, Sigridur;
Ëvarsson, Arnthor;
Ernstsson, Sveinn;
Fridjonsson, Olafur H.;
Skirnisdottir, Sigurlaug;
Wheat, Jon Oskar;
Hermannsdottir, Anna Gudny;
Sigurdsson, Snorri Th.;
Hreggvidsson, Gudmundur O.;
Smith, Albert Vernon;
Kristjansson, Jakob K.

Publication type:

Article

Kinetics of tetramolecular quadruplexes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 81, doi. 10.1093/nar/gki148

By:

Mergny, Jean-Louis;
De Cian, Anne;
Ghelab, Amar;
Saccá, Barbara;
Lacroix, Laurent

Publication type:

Article

A precise DNA bend angle is essential for the function of the phage φ29 transcriptional regulator.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 126, doi. 10.1093/nar/gki146

By:

Pérez-Lago, Laura;
Salas, Margarita;
Camacho, Ana

Publication type:

Article

DNA-binding properties of ARID family proteins.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 66, doi. 10.1093/nar/gki145

By:

Patsialou, Antonia;
Wilsker, Deborah;
Moran, Elizabeth

Publication type:

Article

Multi-class cancer classification by total principal component regression (TPCR) using microarray gene expression data.

Published in:

Nucleic Acids Research, 2005, v. 33, n. 1, p. 56, doi. 10.1093/nar/gki144

By:

Tan, Yongxi;
Shi, Leming;
Tong, Weida;
Wang, Charles

Publication type:

Article