Works matching IS 03051048 AND DT 2004 AND VI 32 AND IP 8

Results: 41

Corrigendum.

Published in:: Nucleic Acids Research, 2004, v. 32, n. 8, p. 2675, doi. 10.1093/nar/gkh602
Publication type:: Article

Mismatch cleavage by single‐strand specific nucleases.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2632, doi. 10.1093/nar/gkh599

By:

Till, Bradley J.;
Burtner, Chris;
Comai, Luca;
Henikoff, Steven

Publication type:

Article

Influence of loop size on the stability of intramolecular DNA quadruplexes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2598, doi. 10.1093/nar/gkh598

By:

Risitano, Antonina;
Fox, Keith R.

Publication type:

Article

Pharmacological and genetic modulation of Wnt‐targeted Cre‐Lox‐mediated gene expression in colorectal cancer cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2660, doi. 10.1093/nar/gkh596

By:

Bordonaro, Michael;
Lazarova, Darina L.;
Sartorelli, Alan C.

Publication type:

Article

Expression of the adenovirus E4 34k oncoprotein inhibits repair of double strand breaks in the cellular genome of a 293‐based inducible cell line.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2652, doi. 10.1093/nar/gkh593

By:

Mohammadi, Elham S.;
Ketner, Elizabeth A.;
Johns, David C.;
Ketner, Gary

Publication type:

Article

Localization and dynamics of small circular DNA in live mammalian nuclei.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2642, doi. 10.1093/nar/gkh587

By:

Mearini, Giulia;
Nielsen, Peter E.;
Fackelmayer, Frank O.

Publication type:

Article

Mapping of the second tetracycline binding site on the ribosomal small subunit of E.coli.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2594, doi. 10.1093/nar/gkh583

By:

Anokhina, Maria M.;
Barta, Andrea;
Nierhaus, Knud H.;
Spiridonova, Vera A.;
Kopylov, Alexei M.

Publication type:

Article

DNA binding and antigene activity of a daunomycin‐conjugated triplex‐forming oligonucleotide targeting the P2 promoter of the human c‐myc gene.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2396, doi. 10.1093/nar/gkh527

By:

Carbone, Giuseppina M.;
McGuffie, Eileen;
Napoli, Sara;
Flanagan, Courtney E.;
Dembech, Chiara;
Negri, Umberto;
Arcamone, Federico;
Capobianco, Massimo L.;
Catapano, Carlo V.

Publication type:

Article

SCFhFBH1 can act as helicase and E3 ubiquitin ligase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2287, doi. 10.1093/nar/gkh534

By:

Kim, Jeong‐Hoon;
Kim, Jaehoon;
Kim, Do‐Hyung;
Ryu, Gi‐Hyuck;
Bae, Sung‐Ho;
Seo, Yeon‐Soo

Publication type:

Article

Three‐dimensional motifs from the SCOR, structural classification of RNA database: extruded strands, base triples, tetraloops and U‐turns.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2342, doi. 10.1093/nar/gkh537

By:

Klosterman, Peter S.;
Hendrix, Donna K.;
Tamura, Makio;
Holbrook, Stephen R.;
Brenner, Steven E.

Publication type:

Article

Synapsis and DNA cleavage in ɸC31 integrase‐mediated site‐specific recombination.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2607, doi. 10.1093/nar/gkh538

By:

Smith, Matthew C. A.;
Till, Rob;
Brady, Kevin;
Soultanas, Panos;
Thorpe, Helena;
Smith, Margaret C. M.

Publication type:

Article

Assessment of reliability of microarray data and estimation of signal thresholds using mixture modeling.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2323, doi. 10.1093/nar/gkh544

By:

Asyali, Musa H.;
Shoukri, Mohamed M.;
Demirkaya, Omer;
Khabar, Khalid S. A.

Publication type:

Article

Meiosis‐specific yeast Hop1 protein promotes synapsis of double‐stranded DNA helices via the formation of guanine quartets.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2378, doi. 10.1093/nar/gkh559

By:

Anuradha, S.;
Muniyappa, K.

Publication type:

Article

The composition of Staufen‐containing RNA granules from human cells indicates their role in the regulated transport and translation of messenger RNAs.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2411, doi. 10.1093/nar/gkh552

By:

Villacé, Patricia;
Marión, Rosa M.;
Ortín, Juan

Publication type:

Article

A novel replicating circular DNAzyme.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2336, doi. 10.1093/nar/gkh547

By:

Chen, Fei;
Wang, Ruijian;
Li, Zhe;
Liu, Bin;
Wang, Xiaoping;
Sun, Yanhong;
Hao, Dongyun;
Zhang, Jin

Publication type:

Article

Identification and functional analysis of ‘hypothetical’ genes expressed in Haemophilus influenzae.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2353, doi. 10.1093/nar/gkh555

By:

Kolker, Eugene;
Makarova, Kira S.;
Shabalina, Svetlana;
Picone, Alex F.;
Purvine, Samuel;
Holzman, Ted;
Cherny, Tim;
Armbruster, David;
Munson, Robert S.;
Kolesov, Grigory;
Frishman, Dmitrij;
Galperin, Michael Y.

Publication type:

Article

Transcription factor binding element detection using functional clustering of mutant expression data.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2362, doi. 10.1093/nar/gkh557

By:

Chen, Gengxin;
Hata, Naoya;
Zhang, Michael Q.

Publication type:

Article

Characterization of the 3′ exonuclease subunit DP1 of Methanococcus jannaschii replicative DNA polymerase D.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2430, doi. 10.1093/nar/gkh558

By:

Jokela, Maarit;
Eskelinen, Anitta;
Pospiech, Helmut;
Rouvinen, Juha;
Syväoja, Juhani E.

Publication type:

Article

α1‐induced DNA bending is required for transcriptional activation by the Mcm1–α1 complex.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2298, doi. 10.1093/nar/gkh560

By:

Carr, Edward A.;
Mead, Janet;
Vershon, Andrew K.

Publication type:

Article

APOBEC3G is a single‐stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2421, doi. 10.1093/nar/gkh554

By:

Suspène, Rodolphe;
Sommer, Peter;
Henry, Michel;
Ferris, Stéphane;
Guétard, Denise;
Pochet, Sylvie;
Chester, Ann;
Navaratnam, Naveenan;
Wain‐Hobson, Simon;
Vartanian, Jean‐Pierre

Publication type:

Article

Multiple protein/protein and protein/RNA interactions suggest roles for yeast DNA/RNA helicase Sen1p in transcription, transcription‐coupled DNA repair and RNA processing.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2441, doi. 10.1093/nar/gkh561

By:

Ursic, Doris;
Chinchilla, Karen;
Finkel, Jonathan S.;
Culbertson, Michael R.

Publication type:

Article

Whole genome comparisons of serotype 4b and 1/2a strains of the food‐borne pathogen Listeria monocytogenes reveal new insights into the core genome components of this species.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2386, doi. 10.1093/nar/gkh562

By:

Nelson, Karen E.;
Fouts, Derrick E.;
Mongodin, Emmanuel F.;
Ravel, Jacques;
DeBoy, Robert T.;
Kolonay, James F.;
Rasko, David A.;
Angiuoli, Samuel V.;
Gill, Steven R.;
Paulsen, Ian T.;
Peterson, Jeremy;
White, Owen;
Nelson, William C.;
Nierman, William;
Beanan, Maureen J.;
Brinkac, Lauren M.;
Daugherty, Sean C.;
Dodson, Robert J.;
Durkin, A. Scott;
Madupu, Ramana

Publication type:

Article

Sequence–structure–function studies of tRNA:m5C methyltransferase Trm4p and its relationship to DNA:m5C and RNA:m5U methyltransferases.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2453, doi. 10.1093/nar/gkh564

By:

Bujnicki, Janusz M.;
Feder, Marcin;
Ayres, Chastity L.;
Redman, Kent L.

Publication type:

Article

Genome wide, supercoiling‐dependent in vivo binding of a viral protein involved in DNA replication and transcriptional control.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2306

By:

González‐Huici, Víctor;
Salas, Margarita;
Hermoso, José M.

Publication type:

Article

Contact‐based sequence alignment.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2464, doi. 10.1093/nar/gkh566

By:

Kleinjung, Jens;
Romein, John;
Lin, Kuang;
Heringa, Jaap

Publication type:

Article

XRCC1–DNA polymerase β interaction is required for efficient base excision repair.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2550, doi. 10.1093/nar/gkh567

By:

Dianova, Irina I.;
Sleeth, Kate M.;
Allinson, Sarah L.;
Parsons, Jason L.;
Breslin, Claire;
Caldecott, Keith W.;
Dianov, Grigory L.

Publication type:

Article

NMR structure of the DNA decamer duplex containing double T·G mismatches of cis–syn cyclobutane pyrimidine dimer: implications for DNA damage recognition by the XPC–hHR23B complex.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2474, doi. 10.1093/nar/gkh568

By:

Lee, Joon‐Hwa;
Park, Chin‐Ju;
Shin, Jae‐Sun;
Ikegami, Takahisa;
Akutsu, Hideo;
Choi, Byong‐Seok

Publication type:

Article

A DNA replication‐related element downstream from the initiation site of Drosophila selenophosphate synthetase 2 gene is essential for its transcription.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2482, doi. 10.1093/nar/gkh569

By:

Jin, Jing Shun;
Baek, Seunghee;
Lee, Hyesin;
Oh, Mi Young;
Koo, Yong Eui;
Shim, Myoung Sup;
Kwon, So Yeon;
Jeon, Iksoo;
Park, So Young;
Baek, Kwanghee;
Yoo, Mi Ae;
Hatfield, Dolph Lee;
Lee, Byeong Jae

Publication type:

Article

Targeted transcriptional repression of Gfi1 by GFI1 and GFI1B in lymphoid cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2508, doi. 10.1093/nar/gkh570

By:

Doan, Loretta L.;
Porter, Susan D.;
Duan, Zhijun;
Flubacher, Marcella M.;
Montoya, Diego;
Tsichlis, Philip N.;
Horwitz, Marshall;
Gilks, C. Blake;
Grimes, H. Leighton

Publication type:

Article

Regulation of the MiTF/TFE bHLH‐LZ transcription factors through restricted spatial expression and alternative splicing of functional domains.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2315, doi. 10.1093/nar/gkh571

By:

Kuiper, Roland P.;
Schepens, Marga;
Thijssen, José;
Schoenmakers, Eric F. P. M.;
van Kessel, Ad Geurts

Publication type:

Article

Mismatching base‐pair dependence of the kinetics of DNA–DNA hybridization studied by surface plasmon fluorescence spectroscopy.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2372, doi. 10.1093/nar/gkh572

By:

Tawa, Keiko;
Knoll, Wolfgang

Publication type:

Article

A Fugu–Human Genome Synteny Viewer: web software for graphical display and annotation reports of synteny between Fugu genomic sequence and human genes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2618

By:

Halling‐Brown, Mark;
Sansom, Clare;
Moss, David S.;
Elgar, Greg;
Edwards, Yvonne J. K.

Publication type:

Article

The Saccharomyces cerevisiae gene CDC40/PRP17 controls cell cycle progression through splicing of the ANC1 gene.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2529, doi. 10.1093/nar/gkh574

By:

Dahan, Orna;
Kupiec, Martin

Publication type:

Article

Crystal structures of a DNA octaplex with I‐motif of G‐quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2541, doi. 10.1093/nar/gkh575

By:

Kondo, Jiro;
Adachi, Wataru;
Umeda, Shun‐ichi;
Sunami, Tomoko;
Takénaka, Akio

Publication type:

Article

The Fen1 extrahelical 3′‐flap pocket is conserved from archaea to human and regulates DNA substrate specificity.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2520

By:

Friedrich‐Heineken, Erica;
Hübscher, Ulrich

Publication type:

Article

Effect of lesions on the dynamics of DNA on the picosecond and nanosecond timescales using a polarity sensitive probe.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2494, doi. 10.1093/nar/gkh577

By:

Somoza, Mark M.;
Andreatta, Daniele;
Murphy, Catherine J.;
Coleman, Robert S.;
Berg, Mark A.

Publication type:

Article

Preferential binding to branched DNA strands and strand‐annealing activity of the human Rad51B, Rad51C, Rad51D and Xrcc2 protein complex.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2556, doi. 10.1093/nar/gkh578

By:

Yokoyama, Hiroshi;
Sarai, Naoyuki;
Kagawa, Wataru;
Enomoto, Rima;
Shibata, Takehiko;
Kurumizaka, Hitoshi;
Yokoyama, Shigeyuki

Publication type:

Article

The hepatitis C virus Core protein is a potent nucleic acid chaperone that directs dimerization of the viral (+) strand RNA in vitro.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2623, doi. 10.1093/nar/gkh579

By:

Cristofari, Gaël;
Ivanyi‐Nagy, Roland;
Gabus, Caroline;
Boulant, Steeve;
Lavergne, Jean‐Pierre;
Penin, François;
Darlix, Jean‐Luc

Publication type:

Article

Hepatocyte Nuclear Factor 4α enhances the Hepatocyte Nuclear Factor 1α‐mediated activation of transcription.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2586, doi. 10.1093/nar/gkh581

By:

Eeckhoute, J.;
Formstecher, P.;
Laine, B.

Publication type:

Article

Predicting transmembrane beta‐barrels in proteomes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2566, doi. 10.1093/nar/gkh580

By:

Bigelow, Henry R.;
Petrey, Donald S.;
Liu, Jinfeng;
Przybylski, Dariusz;
Rost, Burkhard

Publication type:

Article

Functions of yeast helicase Ssl2p that are essential for viability are also involved in protection from the toxicity of adriamycin.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 8, p. 2578, doi. 10.1093/nar/gkh582

By:

Furuchi, Takemitsu;
Takahashi, Tsutomu;
Tanaka, Shogo;
Nitta, Katsushi;
Naganuma, Akira

Publication type:

Article