Works matching IS 03051048 AND DT 2004 AND VI 32 AND IP 3

Results: 56

Generating in vitro transcripts with homogenous 3′ ends using trans‐acting antigenomic delta ribozyme.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e39

By:

Wichłacz, Agnieszka;
Łęgiewicz, Michał;
Ciesiołka, Jerzy

Publication type:

Article

Strong positional preference in the interaction of LNA oligonucleotides with DNA polymerase and proofreading exonuclease activities: implications for genotyping assays.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e32, doi. 10.1093/nar/gnh036

By:

Di Giusto, Daniel A.;
King, Garry C.

Publication type:

Article

Large‐scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e31, doi. 10.1093/nar/gnh035

By:

Khodosevich, Konstantin;
Lebedev, Yuri;
Sverdlov, Eugene D.

Publication type:

Article

Doxycyline regulation in a single retroviral vector by an autoregulatory loop facilitates controlled gene expression in liver cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e30, doi. 10.1093/nar/gnh034

By:

Kühnel, Florian;
Fritsch, Corinna;
Krause, Sabine;
Mundt, Bettina;
Wirth, Thomas;
Paul, Yasmin;
Malek, Nisar Peter;
Zender, Lars;
Manns, Michael Peter;
Kubicka, Stefan

Publication type:

Article

A simple method for estimating global DNA methylation using bisulfite PCR of repetitive DNA elements.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e38, doi. 10.1093/nar/gnh032

By:

Yang, Allen S.;
Estécio, Marcos R. H.;
Doshi, Ketan;
Kondo, Yutaka;
Tajara, Eloiza H.;
Issa, Jean‐Pierre J.

Publication type:

Article

Simple cDNA normalization using kamchatka crab duplex‐specific nuclease.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e37, doi. 10.1093/nar/gnh031

By:

Zhulidov, Pavel A.;
Bogdanova, Ekaterina A.;
Shcheglov, Alex S.;
Vagner, Laura L.;
Khaspekov, George L.;
Kozhemyako, Valery B.;
Matz, Mikhail V.;
Meleshkevitch, Ella;
Moroz, Leonid L.;
Lukyanov, Sergey A.;
Shagin, Dmitry A.

Publication type:

Article

Shuffled antibody libraries created by in vivo homologous recombination and yeast surface display.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e36, doi. 10.1093/nar/gnh030

By:

Swers, Jeffrey S.;
Kellogg, Brenda A.;
Wittrup, K. Dane

Publication type:

Article

Surfection: a new platform for transfected cell arrays.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e33, doi. 10.1093/nar/gnh029

By:

Chang, Fu‐Hsiung;
Lee, Chien‐Hsin;
Chen, Ming‐Ta;
Kuo, Chun‐Chen;
Chiang, Yi‐Lin;
Hang, Chi‐Ying;
Roffler, Steve

Publication type:

Article

Sequence saturation mutagenesis (SeSaM): a novel method for directed evolution.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e26, doi. 10.1093/nar/gnh028

By:

Wong, Tuck Seng;
Tee, Kang Lan;
Hauer, Berhard;
Schwaneberg, Ulrich

Publication type:

Article

Reliability of gene expression ratios for cDNA microarrays in multiconditional experiments with a reference design.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e29, doi. 10.1093/nar/gnh027

By:

König, Rainer;
Baldessari, Danila;
Pollet, Nicolas;
Niehrs, Christof;
Eils, Roland

Publication type:

Article

LSimpute: accurate estimation of missing values in microarray data with least squares methods.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e34

By:

Bø, Trond Hellem;
Dysvik, Bjarte;
Jonassen, Inge

Publication type:

Article

Genomic shotgun array: a procedure linking large‐scale DNA sequencing with regional transcript mapping.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e27

By:

Li, Ling‐Hui;
Li, Jian‐Chiuan;
Lin, Yung‐Feng;
Lin, Chung‐Yen;
Chen, Chung‐Yung;
Tsai, Shih‐Feng

Publication type:

Article

Semiconductor nanocrystal probes for human metaphase chromosomes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e28, doi. 10.1093/nar/gnh024

By:

Xiao, Yan;
Barker, Peter E.

Publication type:

Article

Unlocking hidden genomic sequence.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e35, doi. 10.1093/nar/gnh022

By:

Keith, Jonathan M.;
Cochran, Duncan A. E.;
Lala, Gita H.;
Adams, Peter;
Bryant, Darryn;
Mitchelson, Keith R.

Publication type:

Article

Nuclear localization signal and cell synchrony enhance gene targeting efficiency in primary fetal fibroblasts.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e25, doi. 10.1093/nar/gnh023

By:

Mir, Bashir;
Piedrahita, Jorge A.

Publication type:

Article

Determination of detection and quantification limits for SNP allele frequency estimation in DNA pools using real time PCR.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. e24, doi. 10.1093/nar/gnh020

By:

Schwarz, Gerhard;
Bäumler, Stefan;
Block, Annette;
Felsenstein, Friedrich G.;
Wenzel, Gerhard

Publication type:

Article

Relevance of UP elements for three strong Bacillus subtilis phage ɸ29 promoters.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1166, doi. 10.1093/nar/gkh290

By:

Meijer, Wilfried J. J.;
Salas, Margarita

Publication type:

Article

Identification of NH...N hydrogen bonds by magic angle spinning solid state NMR in a double‐stranded RNA associated with myotonic dystrophy.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1177, doi. 10.1093/nar/gkh288

By:

Leppert, Jörg;
Urbinati, Carl R.;
Häfner, Sabine;
Ohlenschläger, Oliver;
Swanson, Maurice S.;
Görlach, Matthias;
Ramachandran, Ramadurai

Publication type:

Article

Overexpression of phage‐type RNA polymerase RpoTp in tobacco demonstrates its role in chloroplast transcription by recognizing a distinct promoter type.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1159, doi. 10.1093/nar/gkh285

By:

Liere, Karsten;
Kaden, Daniela;
Maliga, Pal;
Börner, Thomas

Publication type:

Article

Mer1p is a modular splicing factor whose function depends on the conserved U2 snRNP protein Snu17p.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1242, doi. 10.1093/nar/gkh281

By:

Spingola, Marc;
Armisen, Javier;
Ares Jr, Manuel

Publication type:

Article

Gene repeat expansion and contraction by spontaneous intrachromosomal homologous recombination in mammalian cells.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1184, doi. 10.1093/nar/gkh280

By:

Read, Leah R.;
Raynard, Steven J.;
Rukść, Ania;
Baker, Mark D.

Publication type:

Article

Translesion synthesis of acetylaminofluorene‐dG adducts by DNA polymerase ζ is stimulated by yeast Rev1 protein.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1122, doi. 10.1093/nar/gkh279

By:

Guo, Dongyu;
Xie, Zhongwen;
Shen, Huiyun;
Zhao, Bo;
Wang, Zhigang

Publication type:

Article

Enhanced gene silencing of HIV‐1 specific siRNA using microRNA designed hairpins.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1154, doi. 10.1093/nar/gkh278

By:

Boden, Daniel;
Pusch, Oliver;
Silbermann, Rebecca;
Lee, Fred;
Tucker, Lynne;
Ramratnam, Bharat

Publication type:

Article

ETR‐3 and CELF4 protein domains required for RNA binding and splicing activity in vivo.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1232, doi. 10.1093/nar/gkh275

By:

Singh, Gopal;
Charlet‐B., Nicolas;
Han, Jin;
Cooper, Thomas A.

Publication type:

Article

Length‐dependent structure formation in Friedreich ataxia (GAA)n·(TTC)n repeats at neutral pH.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1224, doi. 10.1093/nar/gkh274

By:

Potaman, V. N.;
Oussatcheva, E. A.;
Lyubchenko, Y. L.;
Shlyakhtenko, L. S.;
Bidichandani, S. I.;
Ashizawa, T.;
Sinden, R. R.

Publication type:

Article

Analysis and recognition of 5′ UTR intron splice sites in human pre‐mRNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1131, doi. 10.1093/nar/gkh273

By:

Eden, E.;
Brunak, S.

Publication type:

Article

Delineation of the mechanisms of aberrant splicing caused by two unusual intronic mutations in the RSK2 gene involved in Coffin–Lowry syndrome.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1214, doi. 10.1093/nar/gkh272

By:

Zeniou, Maria;
Gattoni, Renata;
Hanauer, André;
Stévenin, James

Publication type:

Article

A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1197, doi. 10.1093/nar/gkh271

By:

Wang, Yan;
Prosen, Dennis E.;
Mei, Li;
Sullivan, John C.;
Finney, Michael;
Vander Horn, Peter B.

Publication type:

Article

A thymine tetrad in d(TGGGGT) quadruplexes stabilized with Tl+/Na+ ions.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1097, doi. 10.1093/nar/gkh269

By:

Cáceres, Carmen;
Wright, Glenford;
Gouyette, Catherine;
Parkinson, Gary;
Subirana, Juan A.

Publication type:

Article

A mutation in polynucleotide phosphorylase from Escherichia coli impairing RNA binding and degradosome stability.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1006

By:

Briani, Federica;
Ghetta, Andrea;
Zangrossi, Sandro;
Ghisotti, Daniela;
Tortora, Paolo;
Dehò, Gianni

Publication type:

Article

Psoralen interstrand cross‐link repair is specifically altered by an adjacent triple‐stranded structure.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1143, doi. 10.1093/nar/gkh267

By:

Guillonneau, F.;
Guieysse, A. L.;
Nocentini, S.;
Giovannangeli, C.;
Praseuth, D.

Publication type:

Article

Atypical archaeal tRNA pyrrolysine transcript behaves towards EF‐Tu as a typical elongator tRNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1091

By:

Théobald‐Dietrich, Anne;
Frugier, Magali;
Giegé, Richard;
Rudinger‐Thirion, Joëlle

Publication type:

Article

Phosphatidyl inositol 3‐kinase‐like serine/threonine protein kinases (PIKKs) are required for DNA damage‐induced phosphorylation of the 32 kDa subunit of replication protein A at threonine 21.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 997, doi. 10.1093/nar/gkh265

By:

Block, Wesley D.;
Yu, Yaping;
Lees‐Miller, Susan P.

Publication type:

Article

RBD‐1, a nucleolar RNA‐binding protein, is essential for Caenorhabditis elegans early development through 18S ribosomal RNA processing.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1028, doi. 10.1093/nar/gkh264

By:

Saijou, Eiko;
Fujiwara, Toshinobu;
Suzaki, Toshinobu;
Inoue, Kunio;
Sakamoto, Hiroshi

Publication type:

Article

Structure–function correlations derived from faster variants of a RNA ligase deoxyribozyme.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1075, doi. 10.1093/nar/gkh263

By:

Prior, Tracey K.;
Semlow, Daniel R.;
Flynn‐Charlebois, Amber;
Rashid, Imran;
Silverman, Scott K.

Publication type:

Article

Interactions among CII protein, RNA polymerase and the λ PRE promoter: contacts between RNA polymerase and the –35 region of PRE are identical in the presence and absence of CII protein.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1083, doi. 10.1093/nar/gkh261

By:

Marr, Michael T.;
Roberts, Jeffrey W.;
Brown, Susan E.;
Klee, Matthew;
Gussin, Gary N.

Publication type:

Article

The inhibition of the human cholesterol 7α‐hydroxylase gene (CYP7A1) promoter by fibrates in cultured cells is mediated via the liver x receptor α and peroxisome proliferator‐activated receptor α heterodimer.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1113, doi. 10.1093/nar/gkh260

By:

Gbaguidi, G. Franck;
Agellon, Luis B.

Publication type:

Article

Physical and functional interaction of the archaeal single‐stranded DNA‐binding protein SSB with RNA polymerase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1065, doi. 10.1093/nar/gkh259

By:

Richard, Derek J.;
Bell, Stephen D.;
White, Malcolm F.

Publication type:

Article

The genome sequence of Bacillus cereus ATCC 10987 reveals metabolic adaptations and a large plasmid related to Bacillus anthracis pXO1.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 977, doi. 10.1093/nar/gkh258

By:

Rasko, David A.;
Ravel, Jacques;
Økstad, Ole Andreas;
Helgason, Erlendur;
Cer, Regina Z.;
Jiang, Lingxia;
Shores, Kelly A.;
Fouts, Derrick E.;
Tourasse, Nicolas J.;
Angiuoli, Samuel V.;
Kolonay, James;
Nelson, William C.;
Kolstø, Anne‐Brit;
Fraser, Claire M.;
Read, Timothy D.

Publication type:

Article

Biased distribution of DNA uptake sequences towards genome maintenance genes.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1050, doi. 10.1093/nar/gkh255

By:

Davidsen, Tonje;
Rødland, Einar A.;
Lagesen, Karin;
Seeberg, Erling;
Rognes, Torbjørn;
Tønjum, Tone

Publication type:

Article

Protein interaction mapping on a functional shotgun sequence of Rickettsia sibirica.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1059, doi. 10.1093/nar/gkh254

By:

Malek, Joel A.;
Wierzbowski, Jamey M.;
Tao, Wei;
Bosak, Stephanie A.;
Saranga, David J.;
Doucette‐Stamm, Lynn;
Smith, Douglas R.;
McEwan, Paul J.;
McKernan, Kevin J.

Publication type:

Article

The importance of intrinsic disorder for protein phosphorylation.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1037, doi. 10.1093/nar/gkh253

By:

Iakoucheva, Lilia M.;
Radivojac, Predrag;
Brown, Celeste J.;
O’Connor, Timothy R.;
Sikes, Jason G.;
Obradovic, Zoran;
Dunker, A. Keith

Publication type:

Article

The diverse superfamily of lysine acetyltransferases and their roles in leukemia and other diseases.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 959, doi. 10.1093/nar/gkh252

By:

Yang, Xiang‐Jiao

Publication type:

Article

Kinetic and thermodynamic characterization of the RNA‐cleaving 8‐17 deoxyribozyme.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 916, doi. 10.1093/nar/gkh250

By:

Bonaccio, Maria;
Credali, Alfredo;
Peracchi, Alessio

Publication type:

Article

Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 936

By:

Ui‐Tei, Kumiko;
Naito, Yuki;
Takahashi, Fumitaka;
Haraguchi, Takeshi;
Ohki‐Hamazaki, Hiroko;
Juni, Aya;
Ueda, Ryu;
Saigo, Kaoru

Publication type:

Article

Statistical analysis of over‐represented words in human promoter sequences.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 949

By:

Mariño‐Ramírez, Leonardo;
Spouge, John L.;
Kanga, Gavin C.;
Landsman, David

Publication type:

Article

The effect of manganese(II) on DNA structure: electronic and vibrational circular dichroism studies.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 989, doi. 10.1093/nar/gkh242

By:

Polyanichko, A. M.;
Andrushchenko, V. V.;
Chikhirzhina, E. V.;
Vorob’ev, V. I.;
Wieser, H.

Publication type:

Article

A library of siRNA duplexes targeting the phosphoinositide 3‐kinase pathway: determinants of gene silencing for use in cell‐based screens.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 893, doi. 10.1093/nar/gkh238

By:

Hsieh, Andrew C.;
Bo, Ronghai;
Manola, Judith;
Vazquez, Francisca;
Bare, Olivia;
Khvorova, Anastasia;
Scaringe, Stephen;
Sellers, William R.

Publication type:

Article

Pre‐steady‐state kinetics shows differences in processing of various DNA lesions by Escherichia coli formamidopyrimidine‐DNA glycosylase.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 926, doi. 10.1093/nar/gkh237

By:

Koval, Vladimir V.;
Kuznetsov, Nikita A.;
Zharkov, Dmitry O.;
Ishchenko, Alexander A.;
Douglas, Kenneth T.;
Nevinsky, Georgy A.;
Fedorova, Olga S.

Publication type:

Article

Assembly of the replication initiation complex on SV40 origin DNA.

Published in:

Nucleic Acids Research, 2004, v. 32, n. 3, p. 1103, doi. 10.1093/nar/gkh236

By:

Simmons, Daniel T.;
Gai, Dahai;
Parsons, Rebekah;
Debes, Amanda;
Roy, Rupa

Publication type:

Article