Works matching IS 03051048 AND DT 2003 AND VI 31 AND IP 14

Results: 53

Leishmania major chromosome 3 contains two long convergent polycistronic gene clusters separated by a tRNA gene.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4201, doi. 10.1093/nar/gkg469

By:

Worthey, E. A.;
Martinez‐Calvillo, Santiago;
Schnaufer, Achim;
Aggarwal, Gautam;
Cawthra, Jason;
Fazelinia, Gholam;
Fong, Chris;
Fu, Guoliang;
Hassebrock, Melissa;
Hixson, Greg;
Ivens, Alasdair C.;
Kiser, Patti;
Marsolini, Felicia;
Rickell, Erica;
Salavati, Reza;
Sisk, Ellen;
Sunkin, Susan M.;
Stuart, Kenneth D.;
Myler, Peter J.

Publication type:

Article

Incision at hypoxanthine residues in DNA by a mammalian homologue of the Escherichia coli antimutator enzyme endonuclease V.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3893, doi. 10.1093/nar/gkg472

By:

Moe, Ane;
Ringvoll, Jeanette;
Nordstrand, Line M.;
Eide, Lars;
Bjørås, Magnar;
Seeberg, Erling;
Rognes, Torbjørn;
Klungland, Arne

Publication type:

Article

Replication of damaged DNA in vitro is blocked by p53.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3881, doi. 10.1093/nar/gkg468

By:

Zhou, Jianmin;
Prives, Carol

Publication type:

Article

Molecular dynamics reveals the stabilizing role of loop closing residues in kissing interactions: comparison between TAR–TAR* and TAR–aptamer.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4275, doi. 10.1093/nar/gkg467

By:

Beaurain, François;
Di Primo, Carmelo;
Toulmé, Jean Jacques;
Laguerre, Michel

Publication type:

Article

On the number of protein–protein interactions in the yeast proteome.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4157, doi. 10.1093/nar/gkg466

By:

Grigoriev, Andrei

Publication type:

Article

Unusual intercalation of acridin‐9‐ylthiourea into the 5′‐GA/TC DNA base step from the minor groove: implications for the covalent DNA adduct profile of a novel platinum–intercalator conjugate.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4138, doi. 10.1093/nar/gkg465

By:

Baruah, Hemanta;
Bierbach, Ulrich

Publication type:

Article

Bacteriophage P1 Ban protein is a hexameric DNA helicase that interacts with and substitutes for Escherichia coli DnaB.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3918, doi. 10.1093/nar/gkg463

By:

Lemonnier, Marc;
Ziegelin, Günter;
Reick, Tobias;
Gómez, Ana Muñoz;
Díaz‐Orejas, Ramón;
Lanka, Erich

Publication type:

Article

Direct real‐time molecular scale visualisation of the degradation of condensed DNA complexes exposed to DNase I.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4001, doi. 10.1093/nar/gkg462

By:

Abdelhady, Hosam G.;
Allen, Stephanie;
Davies, Martyn C.;
Roberts, Clive J.;
Tendler, Saul J. B.;
Williams, Philip M.

Publication type:

Article

CADLIVE for constructing a large‐scale biochemical network based on a simulation‐directed notation and its application to yeast cell cycle.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4071, doi. 10.1093/nar/gkg461

By:

Kurata, Hiroyuki;
Matoba, Nana;
Shimizu, Natsumi

Publication type:

Article

Concerted folding of a Candida ribozyme into the catalytically active structure posterior to a rapid RNA compaction.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3901, doi. 10.1093/nar/gkg455

By:

Xiao, Mu;
Leibowitz, Michael J.;
Zhang, Yi

Publication type:

Article

Hidden messages in the nef gene of human immunodeficiency virus type 1 suggest a novel RNA secondary structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4192, doi. 10.1093/nar/gkg454

By:

Peleg, Ofer;
Trifonov, Edward N.;
Bolshoy, Alexander

Publication type:

Article

The cationic porphyrin TMPyP4 destabilizes the tetraplex form of the fragile X syndrome expanded sequence d(CGG)n.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3963

By:

Weisman‐Shomer, Pnina;
Cohen, Esther;
Hershco, Inbal;
Khateb, Samer;
Wolfovitz‐Barchad, Orit;
Hurley, Laurence H.;
Fry, Michael

Publication type:

Article

Chemical shift changes provide evidence for overlapping single‐stranded DNA‐ and XPA‐binding sites on the 70 kDa subunit of human replication protein A.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4176, doi. 10.1093/nar/gkg451

By:

Daughdrill, Gary W.;
Buchko, Garry W.;
Botuyan, Maria V.;
Arrowsmith, Cheryl;
Wold, Marc S.;
Kennedy, Michael A.;
Lowry, David F.

Publication type:

Article

Transient recruitment of the hnRNP K protein to inducibly transcribed gene loci.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3954, doi. 10.1093/nar/gkg452

By:

Ostrowski, Jerzy;
Kawata, Yasunobu;
Schullery, Daniel S.;
Denisenko, Oleg N.;
Bomsztyk, Karol

Publication type:

Article

Comparative protein structure modeling by iterative alignment, model building and model assessment.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3982, doi. 10.1093/nar/gkg460

By:

John, Bino;
Sali, Andrej

Publication type:

Article

Selective interactions of human kin17 and RPA proteins with chromatin and the nuclear matrix in a DNA damage‐ and cell cycle‐regulated manner.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4162, doi. 10.1093/nar/gkg459

By:

Miccoli, Laurent;
Biard, Denis S. F.;
Frouin, Isabelle;
Harper, Francis;
Maga, Giovanni;
Angulo, Jaime F.

Publication type:

Article

The Arabidopsis AtLIG4 gene is required for the repair of DNA damage, but not for the integration of Agrobacterium T‐DNA.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4247, doi. 10.1093/nar/gkg458

By:

van Attikum, Haico;
Bundock, Paul;
Overmeer, René M.;
Lee, Lan‐Ying;
Gelvin, Stanton B.;
Hooykaas, Paul J. J.

Publication type:

Article

Spatial organization of topoisomerase I‐mediated DNA cleavage induced by camptothecin–oligonucleotide conjugates.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4031, doi. 10.1093/nar/gkg457

By:

Arimondo, Paola B.;
Angenault, Stéphane;
Halby, Ludovic;
Boutorine, Alexandre;
Schmidt, Frédéric;
Monneret, Claude;
Garestier, Thérèse;
Sun, Jian‐Sheng;
Bailly, Christian;
Hélène, Claude

Publication type:

Article

Hfq affects the length and the frequency of short oligo(A) tails at the 3′ end of Escherichia coli rpsO mRNAs.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4017, doi. 10.1093/nar/gkg456

By:

Le Derout, Jacques;
Folichon, Marc;
Briani, Federica;
Dehò, Gianni;
Régnier, Philippe;
Hajnsdorf, Eliane

Publication type:

Article

Pseudocomplementary PNAs as selective modifiers of protein activity on duplex DNA: the case of type IIs restriction enzymes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3929, doi. 10.1093/nar/gkg450

By:

Protozanova, Ekaterina;
Demidov, Vadim V.;
Nielsen, Peter E.;
Frank‐Kamenetskii, Maxim D.

Publication type:

Article

The first completed genome sequence from a teleost fish (Fugu rubripes) adds significant diversity to the nuclear receptor superfamily.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4051, doi. 10.1093/nar/gkg444

By:

Maglich, Jodi M.;
Caravella, Justin A.;
Lambert, Millard H.;
Willson, Timothy M.;
Moore, John T.;
Ramamurthy, Lakshman

Publication type:

Article

Importance of the reverse Hoogsteen base pair 54‐58 for tRNA function.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3946, doi. 10.1093/nar/gkg448

By:

Zagryadskaya, Ekaterina I.;
Doyon, Felix R.;
Steinberg, Sergey V.

Publication type:

Article

Processing of DNA lesions by archaeal DNA polymerases from Sulfolobus solfataricus.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4024, doi. 10.1093/nar/gkg447

By:

Grúz, Petr;
Shimizu, Masatomi;
Pisani, Francesca M.;
Felice, Mariarita De;
Kanke, Yusuke;
Nohmi, Takehiko

Publication type:

Article

Mitochondria‐mediated nuclear mutator phenotype in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3909, doi. 10.1093/nar/gkg446

By:

Rasmussen, Anne Karin;
Chatterjee, Aditi;
Rasmussen, Lene Juel;
Singh, Keshav K.

Publication type:

Article

The frequency of gene targeting in Trypanosoma brucei is independent of target site copy number.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3993, doi. 10.1093/nar/gkg445

By:

Wickstead, Bill;
Ersfeld, Klaus;
Gull, Keith

Publication type:

Article

Temperature‐sensitive mutation in yeast mitochondrial ribosome recycling factor (RRF).

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4218, doi. 10.1093/nar/gkg449

By:

Teyssier, Emeline;
Hirokawa, Go;
Tretiakova, Anna;
Jameson, Bradford;
Kaji, Akira;
Kaji, Hideko

Publication type:

Article

Formation of stable triplexes between purine RNA and pyrimidine oligodeoxyxylonucleotides.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4256, doi. 10.1093/nar/gkg443

By:

Ivanov, Sergei;
Alekseev, Yakov;
Bertrand, Jean‐Remi;
Malvy, Claude;
Gottikh, Marina B.

Publication type:

Article

Region and amino acid residues required for Rad51C binding in the human Xrcc3 protein.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4041, doi. 10.1093/nar/gkg442

By:

Kurumizaka, Hitoshi;
Enomoto, Rima;
Nakada, Maki;
Eda, Keiko;
Yokoyama, Shigeyuki;
Shibata, Takehiko

Publication type:

Article

Correlation between premeiotic DNA replication and chromatin transition at yeast recombination initiation sites.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4085, doi. 10.1093/nar/gkg441

By:

Murakami, Hajime;
Borde, Valerie;
Shibata, Takehiko;
Lichten, Michael;
Ohta, Kunihiro

Publication type:

Article

Assessing functional divergence in EF‐1α and its paralogs in eukaryotes and archaebacteria.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4227, doi. 10.1093/nar/gkg440

By:

Inagaki, Yuji;
Blouin, Christian;
Susko, Edward;
Roger, Andrew J.

Publication type:

Article

Biochemical properties of phosphonoacetate and thiophosphonoacetate oligodeoxyribonucleotides.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4109, doi. 10.1093/nar/gkg439

By:

Sheehan, David;
Lunstad, Benjamin;
Yamada, Christina M.;
Stell, Brian G.;
Caruthers, Marvin H.;
Dellinger, Douglas J.

Publication type:

Article

Computational identification of non‐coding RNAs in Saccharomyces cerevisiae by comparative genomics.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4119, doi. 10.1093/nar/gkg438

By:

McCutcheon, John P.;
Eddy, Sean R.

Publication type:

Article

The C terminus of the human telomerase reverse transcriptase is a determinant of enzyme processivity.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4059, doi. 10.1093/nar/gkg437

By:

Huard, Sylvain;
Moriarty, Tara J.;
Autexier, Chantal

Publication type:

Article

Effect of DNA target sequence on triplex formation by oligo‐2′‐deoxy‐ and 2′‐O‐methylribonucleotides.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4099, doi. 10.1093/nar/gkg436

By:

Cassidy, Rachel A.;
Puri, Nitin;
Miller, Paul S.

Publication type:

Article

An error‐prone family Y DNA polymerase (DinB homolog from Sulfolobus solfataricus) uses a ‘steric gate’ residue for discrimination against ribonucleotides.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4129, doi. 10.1093/nar/gkg417

By:

DeLucia, Angela M.;
Grindley, Nigel D. F.;
Joyce, Catherine M.

Publication type:

Article

EDITORIAL.

Published in:: Nucleic Acids Research, 2003, v. 31, n. 14, p. 3869, doi. 10.1093/nar/gkg388
Publication type:: Article

Molecular modeling of the chromatosome particle.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4264, doi. 10.1093/nar/gkg481

By:

Bharath, M. M. Srinivas;
Chandra, Nagasuma R.;
Rao, M. R. S.

Publication type:

Article

Sm‐like proteins in Eubacteria: the crystal structure of the Hfq protein from Escherichia coli.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4091, doi. 10.1093/nar/gkg480

By:

Sauter, Claude;
Basquin, Jérôme;
Suck, Dietrich

Publication type:

Article

GAGA facilitates binding of Pleiohomeotic to a chromatinized Polycomb response element.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4147, doi. 10.1093/nar/gkg479

By:

Mahmoudi, Tokameh;
Zuijderduijn, Lobke M. P.;
Mohd‐Sarip, Adone;
Verrijzer, C. Peter

Publication type:

Article

The role of the yeast cleavage and polyadenylation factor subunit Ydh1p/Cft2p in pre‐mRNA 3′‐end formation.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3936, doi. 10.1093/nar/gkg478

By:

Kyburz, Andrea;
Sadowski, Martin;
Dichtl, Bernhard;
Keller, Walter

Publication type:

Article

Unique actinomycin D binding to self‐complementary d(CXYGGCCY′X′G) sequences: duplex disruption and binding to a nominally base‐paired hairpin.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4238, doi. 10.1093/nar/gkg477

By:

Chen, Fu‐Ming;
Sha, Feng;
Chin, Ko‐Hsin;
Chou, Shan‐Ho

Publication type:

Article

Thermodynamic calculations and statistical correlations for oligo‐probes design.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4211, doi. 10.1093/nar/gkg476

By:

Matveeva, O. V.;
Shabalina, S. A.;
Nemtsov, V. A.;
Tsodikov, A. D.;
Gesteland, R. F.;
Atkins, J. F.

Publication type:

Article

Mycobacterium tuberculosis RecA intein, a LAGLIDADG homing endonuclease, displays Mn2+ and DNA‐dependent ATPase activity.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4184, doi. 10.1093/nar/gkg475

By:

Guhan, N.;
Muniyappa, K.

Publication type:

Article

Initiation‐mediated mRNA decay in yeast affects heat‐shock mRNAs, and works through decapping and 5′‐to‐3′ hydrolysis.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 4006, doi. 10.1093/nar/gkg474

By:

Heikkinen, Heather L.;
Llewellyn, Sara A.;
Barnes, Christine A.

Publication type:

Article

Histone deacetylases in fungi: novel members, new facts.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3971, doi. 10.1093/nar/gkg473

By:

Trojer, Patrick;
Brandtner, Eva M.;
Brosch, Gerald;
Loidl, Peter;
Galehr, Johannes;
Linzmaier, Roland;
Haas, Hubertus;
Mair, Karin;
Tribus, Martin;
Graessle, Stefan

Publication type:

Article

Simultaneous on/off regulation of transgenes located on a mammalian chromosome with Cre‐expressing adenovirus and a mutant loxP.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. e76, doi. 10.1093/nar/gng076

By:

Kondo, Saki;
Okuda, Aya;
Sato, Hiromi;
Tachikawa, Naoto;
Terashima, Miho;
Kanegae, Yumi;
Saito, Izumu

Publication type:

Article

Heteromeric MAPPIT: a novel strategy to study modification‐dependent protein–protein interactions in mammalian cells.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. e75, doi. 10.1093/nar/gng075

By:

Lemmens, Irma;
Eyckerman, Sven;
Zabeau, Lennart;
Catteeuw, Dominiek;
Vertenten, Els;
Verschueren, Kristin;
Huylebroeck, Danny;
Vandekerckhove, Joël;
Tavernier, Jan

Publication type:

Article

A Hox gene mutation that triggers nonsense‐mediated RNA decay and affects alternative splicing during Drosophila development.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. 3873, doi. 10.1093/nar/gkg482

By:

Alonso, Claudio R.;
Akam, Michael

Publication type:

Article

Experimental validation of novel and conventional approaches to quantitative real‐time PCR data analysis.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. e73, doi. 10.1093/nar/gng073

By:

Peirson, Stuart N.;
Butler, Jason N.;
Foster, Russell G.

Publication type:

Article

mRNA accessible site tagging (MAST): a novel high throughput method for selecting effective antisense oligonucleotides.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 14, p. e72, doi. 10.1093/nar/gng072

By:

Zhang, Hong‐Yan;
Mao, Jianping;
Zhou, Daixing;
Xu, Yunhe;
Thonberg, Håkan;
Liang, Zicai;
Wahlestedt, Claes

Publication type:

Article