Works matching IS 03051048 AND DT 2003 AND VI 31 AND IP 13

Results: 132

Editorial.

Published in:: Nucleic Acids Research, 2003, v. 31, n. 13, p. 3289, doi. 10.1093/nar/gkg631
Publication type:: Article

REDUCE: an online tool for inferring cis-regulatory elements and transcriptional module activities from microarray data.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3487, doi. 10.1093/nar/gkg630

By:

Roven, Crispin;
Bussemaker, Harmen J.

Publication type:

Article

GenePublisher: automated analysis of DNA microarray data.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3471, doi. 10.1093/nar/gkg629

By:

Knudsen, Steen;
Workman, Christopher;
Sicheritz-Ponten, Thomas;
Friis, Carsten

Publication type:

Article

ExpressYourself: a modular platform for processing and visualizing microarray data.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3477, doi. 10.1093/nar/gkg628

By:

Luscombe, Nicholas M.;
Royce, Thomas E.;
Bertone, Paul;
Echols, Nathaniel;
Horak, Christine E.;
Chang, Joseph T.;
Snyder, Michael;
Gerstein, Mark

Publication type:

Article

GeneFizz: a web tool to compare genetic (coding/non-coding) and physical (helix/coil) segmentations of DNA sequences. Gene discovery and evolutionary perspectives.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3843, doi. 10.1093/nar/gkg627

By:

Yeramian, Edouard;
Jones, Louis

Publication type:

Article

DSSPcont: continuous secondary structure assignments for proteins.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3293, doi. 10.1093/nar/gkg626

By:

Carter, Phil;
Andersen, Claus A. F.;
Rost, Burkhard

Publication type:

Article

TRACTS: a program to map oligopurine.oligopyrimidine and other binary DNA tracts.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3682, doi. 10.1093/nar/gkg625

By:

Gal, Moshe;
Katz, Tzvi;
Ovadia, Amir;
Yagil, Gad

Publication type:

Article

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3775, doi. 10.1093/nar/gkg624

By:

Draghici, Sorin;
Khatri, Purvesh;
Bhavsar, Pratik;
Shah, Abhik;
Krawetz, Stephen A.;
Tainsky, Michael A.

Publication type:

Article

MAVID multiple alignment server.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3525, doi. 10.1093/nar/gkg623

By:

Bray, Nicolas;
Pachter, Lior

Publication type:

Article

Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3491, doi. 10.1093/nar/gkg622

By:

Nielsen, Henrik Bjørn;
Wernersson, Rasmus;
Knudsen, Steen

Publication type:

Article

The web server of IBM's Bioinformatics and Pattern Discovery group.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3645, doi. 10.1093/nar/gkg621

By:

Huynh, Tien;
Rigoutsos, Isidore;
Parida, Laxmi;
Platt, Daniel;
Shibuya, Tetsuo

Publication type:

Article

UniqueProt: creating representative protein sequence sets.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3789, doi. 10.1093/nar/gkg620

By:

Mika, Sven;
Rost, Burkhard

Publication type:

Article

EVA: evaluation of protein structure prediction servers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3311, doi. 10.1093/nar/gkg619

By:

Koh, Ingrid Y. Y.;
Eyrich, Volker A.;
Marti-Renom, Marc A.;
Przybylski, Dariusz;
Madhusudhan, Mallur S.;
Eswar, Narayanan;
Graña, Osvaldo;
Pazos, Florencio;
Valencia, Alfonso;
Sali, Andrej;
Rost, Burkhard

Publication type:

Article

YMF: a program for discovery of novel transcription factor binding sites by statistical overrepresentation.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3586, doi. 10.1093/nar/gkg618

By:

Sinha, Saurabh;
Tompa, Martin

Publication type:

Article

mreps: efficient and flexible detection of tandem repeats in DNA.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3672, doi. 10.1093/nar/gkg617

By:

Kolpakov, Roman;
Bana, Ghizlane;
Kucherov, Gregory

Publication type:

Article

ESEfinder: a web resource to identify exonic splicing enhancers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3568, doi. 10.1093/nar/gkg616

By:

Cartegni, Luca;
Wang, Jinhua;
Zhu, Zhengwei;
Zhang, Michael Q.;
Krainer, Adrian R.

Publication type:

Article

INCLUSive: a web portal and service registry for microarray and regulatory sequence analysis.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3468, doi. 10.1093/nar/gkg615

By:

Coessens, Bert;
Thijs, Gert;
Aerts, Stein;
Marchal, Kathleen;
De Smet, Frank;
Engelen, Kristof;
Glenisson, Patrick;
Moreau, Yves;
Mathys, Janick;
De Moor, Bart

Publication type:

Article

Pfold: RNA secondary structure prediction using stochastic context-free grammars.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3423, doi. 10.1093/nar/gkg614

By:

Knudsen, Bjarne;
Hein, Jotun

Publication type:

Article

SPA: simple web tool to assess statistical significance of DNA patterns.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3679, doi. 10.1093/nar/gkg613

By:

Richard, H.;
Nuel, G.

Publication type:

Article

RNAsoft: a suite of RNA secondary structure prediction and design software tools.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3416, doi. 10.1093/nar/gkg612

By:

Andronescu, Mirela;
Aguirre-Hernández, Rosalía;
Condon, Anne;
Hoos, Holger H.

Publication type:

Article

Signal search analysis server.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3618, doi. 10.1093/nar/gkg611

By:

Ambrosini, Giovanna;
Praz, Viviane;
Jagannathan, Vidhya;
Bucher, Philipp

Publication type:

Article

Multiple sequence alignment with the Clustal series of programs.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3497, doi. 10.1093/nar/gkg500

By:

Chenna, Ramu;
Sugawara, Hideaki;
Koike, Tadashi;
Lopez, Rodrigo;
Gibson, Toby J.;
Higgins, Desmond G.;
Thompson, Julie D.

Publication type:

Article

Theatre: a software tool for detailed comparative analysis and visualization of genomic sequence.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3510, doi. 10.1093/nar/gkg501

By:

Edwards, Yvonne J. K.;
Carver, Tim J.;
Vavouri, Tanya;
Frith, Martin;
Bishop, Martin J.;
Elgar, Greg

Publication type:

Article

CLOURE: Clustal Output Reformatter, a program for reformatting ClustalX/ClustalW outputs for SNP analysis and molecular systematics.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3501, doi. 10.1093/nar/gkg502

By:

Kohli, Davinder K.;
Bachhawat, Anand K.

Publication type:

Article

ORFeus: detection of distant homology using sequence profiles and predicted secondary structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3804, doi. 10.1093/nar/gkg504

By:

Ginalski, Krzysztof;
Pas, Jakub;
Wyrwicz, Lucjan S.;
Grotthuss, Marcin von;
Bujnicki, Janusz M.;
Rychlewski, Leszek

Publication type:

Article

Detection of reliable and unexpected protein fold predictions using 3D-Jury.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3291, doi. 10.1093/nar/gkg503

By:

Ginalski, Krzysztof;
Rychlewski, Leszek

Publication type:

Article

NRSAS: Nuclear Receptor Structure Analysis Servers.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3400, doi. 10.1093/nar/gkg505

By:

Bettler, Emmanuel;
Krause, Roland;
Horn, Florence;
Vriend, Gert

Publication type:

Article

Annotation in three dimensions. PINTS: Patterns in Non-homologous Tertiary Structures.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3341, doi. 10.1093/nar/gkg506

By:

Stark, Alexander;
Russell, Robert B.

Publication type:

Article

SSEP: secondary structural elements of proteins.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3404, doi. 10.1093/nar/gkg507

By:

Shanthi, V.;
Selvarani, P.;
Kumar, Ch. Kiran;
Mohire, C. S.;
Sekar, K.

Publication type:

Article

CRP: Cleavage of Radiolabeled Phosphoproteins.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3859, doi. 10.1093/nar/gkg513

By:

Mackey, Aaron J.;
Haystead, Timothy A.J.;
Pearson, William R.

Publication type:

Article

SIFT: predicting amino acid changes that affect protein function.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3812

By:

Ng, Pauline C.;
Henikoff, Steven

Publication type:

Article

MHCPred: a server for quantitative prediction of peptide–MHC binding.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3621, doi. 10.1093/nar/gkg510

By:

Guan, Pingping;
Doytchinova, Irini A.;
Zygouri, Christianna;
Flower, Darren R.

Publication type:

Article

SiteSeer: visualisation and analysis of transcription factor binding sites in nucleotide sequences.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3572, doi. 10.1093/nar/gkg511

By:

Boardman, Paul E.;
Oliver, Stephen G.;
Hubbard, Simon J.

Publication type:

Article

CASTp: Computed Atlas of Surface Topography of proteins.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3352, doi. 10.1093/nar/gkg512

By:

Binkowski, T. Andrew;
Naghibzadeh, Shapor;
Liang, Jie

Publication type:

Article

The PredictProtein server.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3300, doi. 10.1093/nar/gkg508

By:

Rost, Burkhard;
Liu, Jinfeng

Publication type:

Article

LOC3D: annotate sub-cellular localization for protein structures.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3337, doi. 10.1093/nar/gkg514

By:

Nair, Rajesh;
Rost, Burkhard

Publication type:

Article

NORSp: predictions of long regions without regular secondary structure.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3833, doi. 10.1093/nar/gkg515

By:

Liu, Jinfeng;
Rost, Burkhard

Publication type:

Article

Dragon ERE Finder version 2: a tool for accurate detection and analysis of estrogen response elements in vertebrate genomes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3605, doi. 10.1093/nar/gkg517

By:

Bajic, Vladimir B.;
Tan, Sin Lam;
Chong, Allen;
Tang, Suisheng;
Ström, Anders;
Gustafsson, Jan-Åke;
Lin, Chin-Yo;
Liu, Edison T.

Publication type:

Article

NEWT, a new taxonomy portal.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3822, doi. 10.1093/nar/gkg516

By:

Phan, I. Q. H.;
Pilbout, S. F.;
Fleischmann, W.;
Bairoch, A.

Publication type:

Article

PipeAlign: a new toolkit for protein family analysis.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3829, doi. 10.1093/nar/gkg518

By:

Plewniak, Frédéric;
Bianchetti, Laurent;
Brelivet, Yann;
Carles, Annaick;
Chalmel, Frédéric;
Lecompte, Odile;
Mochel, Thiebaut;
Moulinier, Luc;
Muller, Arnaud;
Muller, Jean;
Prigent, Veronique;
Ripp, Raymond;
Thierry, Jean-Claude;
Thompson, Julie D.;
Wicker, Nicolas;
Poch, Olivier

Publication type:

Article

GlobPlot: exploring protein sequences for globularity and disorder.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3701, doi. 10.1093/nar/gkg519

By:

Linding, Rune;
Russell, Robert B.;
Neduva, Victor;
Gibson, Toby J.

Publication type:

Article

SWISS-MODEL: an automated protein homology-modeling server.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3381, doi. 10.1093/nar/gkg520

By:

Schwede, Torsten;
Kopp, Jürgen;
Guex, Nicolas;
Peitsch, Manuel C.

Publication type:

Article

GPRM: a genetic programming approach to finding common RNA secondary structure elements.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3446

By:

Hu, Yuh-Jyh

Publication type:

Article

Tcoffee@igs: a web server for computing, evaluating and combining multiple sequence alignments.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3503, doi. 10.1093/nar/gkg522

By:

Poirot, Olivier;
O'Toole, Eamonn;
Notredame, Cedric

Publication type:

Article

AHMII: Agent to Help Microbial Information Integration.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3727, doi. 10.1093/nar/gkg523

By:

Sugawara, Hideaki;
Miyazaki, Satoru

Publication type:

Article

CODEHOP (COnsensus-DEgenerate Hybrid Oligonucleotide Primer) PCR primer design.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3763, doi. 10.1093/nar/gkg524

By:

Rose, Timothy M.;
Henikoff, Jorja G.;
Henikoff, Steven

Publication type:

Article

PromH: promoters identification using orthologous genomic sequences.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3540, doi. 10.1093/nar/gkg525

By:

Solovyev, V. V.;
Shahmuradov, I. A.

Publication type:

Article

NEBcutter: a program to cleave DNA with restriction enzymes.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3688, doi. 10.1093/nar/gkg526

By:

Vincze, Tamas;
Posfai, Janos;
Roberts, Richard J.

Publication type:

Article

GlimmerM, Exonomy and Unveil: three ab initio eukaryotic genefinders.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3601, doi. 10.1093/nar/gkg527

By:

Majoros, William H.;
Pertea, Mihaela;
Antonescu, Corina;
Salzberg, Steven L.

Publication type:

Article

Tools for the automatic identification and classification of RNA base pairs.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3450, doi. 10.1093/nar/gkg529

By:

Yang, Huanwang;
Jossinet, Fabrice;
Leontis, Neocles;
Chen, Li;
Westbrook, John;
Berman, Helen;
Westhof, Eric

Publication type:

Article