Works in Nucleic Acids Research, 2024, Vol 52, Issue D1

Results: 183

The UCSC Genome Browser database: 2024 update.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1082, doi. 10.1093/nar/gkad987

By:

Raney, Brian J;
Barber, Galt P;
Benet-Pagès, Anna;
Casper, Jonathan;
Clawson, Hiram;
Cline, Melissa S;
Diekhans, Mark;
Fischer, Clayton;
Navarro Gonzalez, Jairo;
Hickey, Glenn;
Hinrichs, Angie S;
Kuhn, Robert M;
Lee, Brian T;
Lee, Christopher M;
Le Mercier, Phillipe;
Miga, Karen H;
Nassar, Luis R;
Nejad, Parisa;
Paten, Benedict;
Perez, Gerardo

Publication type:

Article

BloodSpot 3.0: a database of gene and protein expression data in normal and malignant haematopoiesis.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1138, doi. 10.1093/nar/gkad993

By:

Gíslason, Magnús H;
Demircan, Gül Sude;
Prachar, Marek;
Furtwängler, Benjamin;
Schwaller, Juerg;
Schoof, Erwin M;
Porse, Bo Torben;
Rapin, Nicolas;
Bagger, Frederik Otzen

Publication type:

Article

A new paradigm for molecular dynamics databases: the COVID-19 database, the legacy of a titanic community effort.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D393, doi. 10.1093/nar/gkad991

By:

Beltrán, Daniel;
Hospital, Adam;
Gelpí, Josep Lluís;
Orozco, Modesto

Publication type:

Article

ZEBRA: a hierarchically integrated gene expression atlas of the murine and human brain at single-cell resolution.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1089, doi. 10.1093/nar/gkad990

By:

Flotho, Matthias;
Amand, Jérémy;
Hirsch, Pascal;
Grandke, Friederike;
Wyss-Coray, Tony;
Keller, Andreas;
Kern, Fabian

Publication type:

Article

CADD v1.7: using protein language models, regulatory CNNs and other nucleotide-level scores to improve genome-wide variant predictions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1143, doi. 10.1093/nar/gkad989

By:

Schubach, Max;
Maass, Thorben;
Nazaretyan, Lusiné;
Röner, Sebastian;
Kircher, Martin

Publication type:

Article

RefSeq and the prokaryotic genome annotation pipeline in the age of metagenomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D762, doi. 10.1093/nar/gkad988

By:

Haft, Daniel H;
Badretdin, Azat;
Coulouris, George;
DiCuccio, Michael;
Durkin, A Scott;
Jovenitti, Eric;
Li, Wenjun;
Mersha, Megdelawit;
O'Neill, Kathleen R;
Virothaisakun, Joel;
Thibaud-Nissen, Françoise

Publication type:

Article

The P10K database: a data portal for the protist 10 000 genomes project.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D747, doi. 10.1093/nar/gkad992

By:

Gao, Xinxin;
Chen, Kai;
Xiong, Jie;
Zou, Dong;
Yang, Fangdian;
Ma, Yingke;
Jiang, Chuanqi;
Gao, Xiaoxuan;
Wang, Guangying;
Gu, Siyu;
Zhang, Peng;
Luo, Shuai;
Huang, Kaiyao;
Bao, Yiming;
Zhang, Zhang;
Ma, Lina;
Miao, Wei

Publication type:

Article

COSMIC: a curated database of somatic variants and clinical data for cancer.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1210, doi. 10.1093/nar/gkad986

By:

Sondka, Zbyslaw;
Dhir, Nidhi Bindal;
Carvalho-Silva, Denise;
Jupe, Steven;
Madhumita;
McLaren, Karen;
Starkey, Mike;
Ward, Sari;
Wilding, Jennifer;
Ahmed, Madiha;
Argasinska, Joanna;
Beare, David;
Chawla, Manpreet Singh;
Duke, Stephen;
Fasanella, Ilaria;
Neogi, Avirup Guha;
Haller, Susan;
Hetenyi, Balazs;
Hodges, Leonie;
Holmes, Alex

Publication type:

Article

DescribePROT in 2023: more, higher-quality and experimental annotations and improved data download options.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D426, doi. 10.1093/nar/gkad985

By:

Basu, Sushmita;
Zhao, Bi;
Biró, Bálint;
Faraggi, Eshel;
Gsponer, Jörg;
Hu, Gang;
Kloczkowski, Andrzej;
Malhis, Nawar;
Mirdita, Milot;
Söding, Johannes;
Steinegger, Martin;
Wang, Duolin;
Wang, Kui;
Xu, Dong;
Zhang, Jian;
Kurgan, Lukasz

Publication type:

Article

The antiSMASH database version 4: additional genomes and BGCs, new sequence-based searches and more.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D586, doi. 10.1093/nar/gkad984

By:

Blin, Kai;
Shaw, Simon;
Medema, Marnix H;
Weber, Tilmann

Publication type:

Article

RefMetaPlant: a reference metabolome database for plants across five major phyla.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1614, doi. 10.1093/nar/gkad980

By:

Shi, Han;
Wu, Xueting;
Zhu, Yan;
Jiang, Tao;
Wang, Zhengwei;
Li, Xuetong;
Liu, Jianju;
Zhang, Yingxue;
Chen, Feng;
Gao, Jinshan;
Xu, Xiaoyan;
Zhang, Guoqing;
Xiao, Ning;
Feng, Xianzhong;
Zhang, Peng;
Wu, Yongrui;
Li, Aihong;
Chen, Ping;
Li, Xuan

Publication type:

Article

PhageScope: a well-annotated bacteriophage database with automatic analyses and visualizations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D756, doi. 10.1093/nar/gkad979

By:

Wang, Ruo Han;
Yang, Shuo;
Liu, Zhixuan;
Zhang, Yuanzheng;
Wang, Xueying;
Xu, Zixin;
Wang, Jianping;
Li, Shuai Cheng

Publication type:

Article

jMorp: Japanese Multi-Omics Reference Panel update report 2023.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D622, doi. 10.1093/nar/gkad978

By:

Tadaka, Shu;
Kawashima, Junko;
Hishinuma, Eiji;
Saito, Sakae;
Okamura, Yasunobu;
Otsuki, Akihito;
Kojima, Kaname;
Komaki, Shohei;
Aoki, Yuichi;
Kanno, Takanari;
Saigusa, Daisuke;
Inoue, Jin;
Shirota, Matsuyuki;
Takayama, Jun;
Katsuoka, Fumiki;
Shimizu, Atsushi;
Tamiya, Gen;
Shimizu, Ritsuko;
Hiratsuka, Masahiro;
Motoike, Ikuko N

Publication type:

Article

DrugBank 6.0: the DrugBank Knowledgebase for 2024.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1265, doi. 10.1093/nar/gkad976

By:

Knox, Craig;
Wilson, Mike;
Klinger, Christen M;
Franklin, Mark;
Oler, Eponine;
Wilson, Alex;
Pon, Allison;
Cox, Jordan;
Chin, Na Eun (Lucy);
Strawbridge, Seth A;
Garcia-Patino, Marysol;
Kruger, Ray;
Sivakumaran, Aadhavya;
Sanford, Selena;
Doshi, Rahil;
Khetarpal, Nitya;
Fatokun, Omolola;
Doucet, Daphnee;
Zubkowski, Ashley;
Rayat, Dorsa Yahya

Publication type:

Article

OPIA: an open archive of plant images and related phenotypic traits.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1530, doi. 10.1093/nar/gkad975

By:

Cao, Yongrong;
Tian, Dongmei;
Tang, Zhixin;
Liu, Xiaonan;
Hu, Weijuan;
Zhang, Zhang;
Song, Shuhui

Publication type:

Article

EndoQuad: a comprehensive genome-wide experimentally validated endogenous G-quadruplex database.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D72, doi. 10.1093/nar/gkad966

By:

Qian, Sheng Hu;
Shi, Meng-Wei;
Xiong, Yu-Li;
Zhang, Yuan;
Zhang, Ze-Hao;
Song, Xue-Mei;
Deng, Xin-Yin;
Chen, Zhen-Xia

Publication type:

Article

NCBI GEO: archive for gene expression and epigenomics data sets: 23-year update.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D138, doi. 10.1093/nar/gkad965

By:

Clough, Emily;
Barrett, Tanya;
Wilhite, Stephen E;
Ledoux, Pierre;
Evangelista, Carlos;
Kim, Irene F;
Tomashevsky, Maxim;
Marshall, Kimberly A;
Phillippy, Katherine H;
Sherman, Patti M;
Lee, Hyeseung;
Zhang, Naigong;
Serova, Nadezhda;
Wagner, Lukas;
Zalunin, Vadim;
Kochergin, Andrey;
Soboleva, Alexandra

Publication type:

Article

IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D164, doi. 10.1093/nar/gkad964

By:

Camargo, Antonio Pedro;
Call, Lee;
Roux, Simon;
Nayfach, Stephen;
Huntemann, Marcel;
Palaniappan, Krishnaveni;
Ratner, Anna;
Chu, Ken;
Mukherjeep, Supratim;
Reddy, T B K;
Chen, I-Min A;
Ivanova, Natalia N;
Eloe-Fadrosh, Emiley A;
Woyke, Tanja;
Baltrus, David A;
Castañeda-Barba, Salvador;
de la Cruz, Fernando;
Funnell, Barbara E;
Hall, James P J;
Mukhopadhyay, Aindrila

Publication type:

Article

PPGR: a comprehensive perennial plant genomes and regulation database.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1588, doi. 10.1093/nar/gkad963

By:

Yang, Sen;
Zong, Wenting;
Shi, Lingling;
Li, Ruisi;
Ma, Zhenshu;
Ma, Shubao;
Si, Jingna;
Wu, Zhijing;
Zhai, Jinglan;
Ma, Yingke;
Fan, Zhuojing;
Chen, Sisi;
Huang, Huahong;
Zhang, Deqiang;
Bao, Yiming;
Li, Rujiao;
Xie, Jianbo

Publication type:

Article

TADB 3.0: an updated database of bacterial toxin–antitoxin loci and associated mobile genetic elements.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D784, doi. 10.1093/nar/gkad962

By:

Guan, Jiahao;
Chen, Yongkui;
Goh, Ying-Xian;
Wang, Meng;
Tai, Cui;
Deng, Zixin;
Song, Jiangning;
Ou, Hong-Yu

Publication type:

Article

DiSignAtlas: an atlas of human and mouse disease signatures based on bulk and single-cell transcriptomics.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1236, doi. 10.1093/nar/gkad961

By:

Zhai, Zhaoyu;
Lin, Zhewei;
Meng, Xuehang;
Zheng, Xiao;
Du, Yujia;
Li, Zhi;
Zhang, Xuelu;
Liu, Chang;
Zhou, Lu;
Zhang, Xu;
Tian, Zhihao;
Ma, Qinfeng;
Li, Jinhao;
Li, Qiang;
Pan, Jianbo

Publication type:

Article

WikiPathways 2024: next generation pathway database.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D679, doi. 10.1093/nar/gkad960

By:

Agrawal, Ayushi;
Balcı, Hasan;
Hanspers, Kristina;
Coort, Susan L;
Martens, Marvin;
Slenter, Denise N;
Ehrhart, Friederike;
Digles, Daniela;
Waagmeester, Andra;
Wassink, Isabel;
Abbassi-Daloii, Tooba;
Lopes, Elisson N;
Iyer, Aishwarya;
Acosta, Javier Millán;
Willighagen, Lars G;
Nishida, Kozo;
Riutta, Anders;
Basaric, Helena;
Evelo, Chris T;
Willighagen, Egon L

Publication type:

Article

UTexas Aptamer Database: the collection and long-term preservation of aptamer sequence information.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D351, doi. 10.1093/nar/gkad959

By:

Askari, Ali;
Kota, Sumedha;
Ferrell, Hailey;
Swamy, Shriya;
Goodman, Kayla S;
Okoro, Christine C;
Spruell Crenshaw, Isaiah C;
Hernandez, Daniela K;
Oliphant, Taylor E;
Badrayani, Akshata A;
Ellington, Andrew D;
Stovall, Gwendolyn M

Publication type:

Article

COV2Var, a function annotation database of SARS-CoV-2 genetic variation.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D701, doi. 10.1093/nar/gkad958

By:

Feng, Yuzhou;
Yi, Jiahao;
Yang, Lin;
Wang, Yanfei;
Wen, Jianguo;
Zhao, Weiling;
Kim, Pora;
Zhou, Xiaobo

Publication type:

Article

The Nucleic Acid Knowledgebase: a new portal for 3D structural information about nucleic acids.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D245, doi. 10.1093/nar/gkad957

By:

Lawson, Catherine L;
Berman, Helen M;
Chen, Li;
Vallat, Brinda;
Zirbel, Craig L

Publication type:

Article

SilkMeta: a comprehensive platform for sharing and exploiting pan-genomic and multi-omic silkworm data.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1024, doi. 10.1093/nar/gkad956

By:

Lu, Kunpeng;
Pan, Yifei;
Shen, Jianghong;
Yang, Lin;
Zhan, Chengyu;
Liang, Shubo;
Tai, Shuaishuai;
Wan, Linrong;
Li, Tian;
Cheng, Tingcai;
Ma, Bi;
Pan, Guoqing;
He, Ningjia;
Lu, Cheng;
Westhof, Eric;
Xiang, Zhonghuai;
Han, Min-Jin;
Tong, Xiaoling;
Dai, Fangyin

Publication type:

Article

STAB2: an updated spatio-temporal cell atlas of the human and mouse brain.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1033, doi. 10.1093/nar/gkad955

By:

Yang, Yucheng T;
Gan, Ziquan;
Zhang, Jinglong;
Zhao, Xingzhong;
Yang, Yifan;
Han, Shuwen;
Wu, Wei;
Zhao, Xing-Ming

Publication type:

Article

HHCDB: a database of human heterochromatin regions.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D145, doi. 10.1093/nar/gkad954

By:

Wang, Hongli;
Su, Mu;
Xing, Jie;
Zhou, Jie;
Wang, Jinzhang;
Chen, Long;
Dong, Haomin;
Xue, Wenhui;
Liu, Yubo;
Wu, Qiong;
Zhang, Yan

Publication type:

Article

circRNADisease v2.0: an updated resource for high-quality experimentally supported circRNA-disease associations.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1193, doi. 10.1093/nar/gkad949

By:

Sun, Zhi-Yan;
Yang, Chang-Lin;
Huang, Li-Jie;
Mo, Zong-Chao;
Zhang, Ke-Nan;
Fan, Wen-Hua;
Wang, Kuan-Yu;
Wu, Fan;
Wang, Ji-Guang;
Meng, Fan-Lin;
Zhao, Zheng;
Jiang, Tao

Publication type:

Article

PED in 2024: improving the community deposition of structural ensembles for intrinsically disordered proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D536, doi. 10.1093/nar/gkad947

By:

Ghafouri, Hamidreza;
Lazar, Tamas;
Del Conte, Alessio;
Tenorio Ku, Luiggi G;
Consortium, PED;
Tompa, Peter;
Tosatto, Silvio C E;
Monzon, Alexander Miguel

Publication type:

Article

ViralZone 2024 provides higher-resolution images and advanced virus-specific resources.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D817, doi. 10.1093/nar/gkad946

By:

De Castro, Edouard;
Hulo, Chantal;
Masson, Patrick;
Auchincloss, Andrea;
Bridge, Alan;
Le Mercier, Philippe

Publication type:

Article

PlantPAN 4.0: updated database for identifying conserved non-coding sequences and exploring dynamic transcriptional regulation in plant promoters.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1569, doi. 10.1093/nar/gkad945

By:

Chow, Chi-Nga;
Yang, Chien-Wen;
Wu, Nai-Yun;
Wang, Hung-Teng;
Tseng, Kuan-Chieh;
Chiu, Yu-Hsuan;
Lee, Tzong-Yi;
Chang, Wen-Chi

Publication type:

Article

The IUPHAR/BPS Guide to PHARMACOLOGY in 2024.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1438, doi. 10.1093/nar/gkad944

By:

Harding, Simon D;
Armstrong, Jane F;
Faccenda, Elena;
Southan, Christopher;
Alexander, Stephen P H;
Davenport, Anthony P;
Spedding, Michael;
Davies, Jamie A

Publication type:

Article

SPIRE: a Searchable, Planetary-scale mIcrobiome REsource.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D777, doi. 10.1093/nar/gkad943

By:

Schmidt, Thomas S B;
Fullam, Anthony;
Ferretti, Pamela;
Orakov, Askarbek;
Maistrenko, Oleksandr M;
Ruscheweyh, Hans-Joachim;
Letunic, Ivica;
Duan, Yiqian;
Van Rossum, Thea;
Sunagawa, Shinichi;
Mende, Daniel R;
Finn, Robert D;
Kuhn, Michael;
Pedro Coelho, Luis;
Bork, Peer

Publication type:

Article

A3D Model Organism Database (A3D-MODB): a database for proteome aggregation predictions in model organisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D360, doi. 10.1093/nar/gkad942

By:

Badaczewska-Dawid, Aleksandra E;
Kuriata, Aleksander;
Pintado-Grima, Carlos;
Garcia-Pardo, Javier;
Burdukiewicz, Michał;
Iglesias, Valentín;
Kmiecik, Sebastian;
Ventura, Salvador

Publication type:

Article

COLOCdb: a comprehensive resource for multi-model colocalization of complex traits.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D871, doi. 10.1093/nar/gkad939

By:

Pan, Siyu;
Kang, Hongen;
Liu, Xinxuan;
Li, Shuhua;
Yang, Peng;
Wu, Mingqiu;
Yuan, Na;
Lin, Shiqi;
Zheng, Qiwen;
Jia, Peilin

Publication type:

Article

RVdb: a comprehensive resource and analysis platform for rhinovirus research.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D770, doi. 10.1093/nar/gkad937

By:

Zhao, Peng;
Zhou, Siyu;
Xu, Panpan;
Su, Haoxiang;
Han, Yelin;
Dong, Jie;
Sui, Hongtao;
Li, Xin;
Hu, Yongfeng;
Wu, Zhiqiang;
Liu, Bo;
Zhang, Ting;
Yang, Fan

Publication type:

Article

ICEberg 3.0: functional categorization and analysis of the integrative and conjugative elements in bacteria.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D732, doi. 10.1093/nar/gkad935

By:

Wang, Meng;
Liu, Guitian;
Liu, Meng;
Tai, Cui;
Deng, Zixin;
Song, Jiangning;
Ou, Hong-Yu

Publication type:

Article

STOmicsDB: a comprehensive database for spatial transcriptomics data sharing, analysis and visualization.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1053, doi. 10.1093/nar/gkad933

By:

Xu, Zhicheng;
Wang, Weiwen;
Yang, Tao;
Li, Ling;
Ma, Xizheng;
Chen, Jing;
Wang, Jieyu;
Huang, Yan;
Gould, Joshua;
Lu, Huifang;
Du, Wensi;
Sahu, Sunil Kumar;
Yang, Fan;
Li, Zhiyong;
Hu, Qingjiang;
Hua, Cong;
Hu, Shoujie;
Liu, Yiqun;
Cai, Jia;
You, Lijin

Publication type:

Article

dbAPIS: a database of anti-prokaryotic immune system genes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D419, doi. 10.1093/nar/gkad932

By:

Yan, Yuchen;
Zheng, Jinfang;
Zhang, Xinpeng;
Yin, Yanbin

Publication type:

Article

MethMarkerDB: a comprehensive cancer DNA methylation biomarker database.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1380, doi. 10.1093/nar/gkad923

By:

Zhu, Zhixian;
Zhou, Qiangwei;
Sun, Yuanhui;
Lai, Fuming;
Wang, Zhenji;
Hao, Zhigang;
Li, Guoliang

Publication type:

Article

FusionNeoAntigen: a resource of fusion gene-specific neoantigens.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1276, doi. 10.1093/nar/gkad922

By:

Kumar, Himansu;
Luo, Ruihan;
Wen, Jianguo;
Yang, Chengyuan;
Zhou, Xiaobo;
Kim, Pora

Publication type:

Article

CMAUP database update 2024: extended functional and association information of useful plants for biomedical research.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1508, doi. 10.1093/nar/gkad921

By:

Hou, Dongyue;
Lin, Hanbo;
Feng, Yuhan;
Zhou, Kaicheng;
Li, Xingxiu;
Yang, Yuan;
Wang, Shuaiqi;
Yang, Xue;
Wang, Jiayu;
Zhao, Hui;
Zhang, Xuyao;
Fan, Jiajun;
Lu, SongLin;
Wang, Dan;
Zhu, Lyuhan;
Ju, Dianwen;
Chen, Yu Zong;
Zeng, Xian

Publication type:

Article

FusionPDB: a knowledgebase of human fusion proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1289, doi. 10.1093/nar/gkad920

By:

Kumar, Himansu;
Tang, Lin-Ya;
Yang, Chengyuan;
Kim, Pora

Publication type:

Article

AnimalMetaOmics: a multi-omics data resources for exploring animal microbial genomes and microbiomes.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D690, doi. 10.1093/nar/gkad931

By:

Hu, Ruirui;
Li, Fulin;
Chen, Yifan;
Liu, Chuyang;
Li, Jiawei;
Ma, Zhongchen;
Wang, Yue;
Cui, Chaowen;
Luo, Chengfang;
Zhou, Ping;
Ni, Wei;
Yang, Qing-Yong;
Hu, Shengwei

Publication type:

Article

scATAC-Ref: a reference of scATAC-seq with known cell labels in multiple species.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D285, doi. 10.1093/nar/gkad924

By:

Qian, Feng-Cui;
Zhou, Li-Wei;
Zhu, Yan-Bing;
Li, Yan-Yu;
Yu, Zheng-Min;
Feng, Chen-Chen;
Fang, Qiao-Li;
Zhao, Yu;
Cai, Fu-Hong;
Wang, Qiu-Yu;
Tang, Hui-Fang;
Li, Chun-Quan

Publication type:

Article

DisProt in 2024: improving function annotation of intrinsically disordered proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D434, doi. 10.1093/nar/gkad928

By:

Aspromonte, Maria Cristina;
Nugnes, Maria Victoria;
Quaglia, Federica;
Bouharoua, Adel;
Consortium, DisProt;
Tosatto, Silvio C E;
Piovesan, Damiano

Publication type:

Article

Human Ageing Genomic Resources: updates on key databases in ageing research.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D900, doi. 10.1093/nar/gkad927

By:

de Magalhães, João Pedro;
Abidi, Zoya;
dos Santos, Gabriel Arantes;
Avelar, Roberto A;
Barardo, Diogo;
Chatsirisupachai, Kasit;
Clark, Peter;
De-Souza, Evandro A;
Johnson, Emily J;
Lopes, Inês;
Novoa, Guy;
Senez, Ludovic;
Talay, Angelo;
Thornton, Daniel;
To, Paul Ka Po

Publication type:

Article

BATMAN-TCM 2.0: an enhanced integrative database for known and predicted interactions between traditional Chinese medicine ingredients and target proteins.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D1110, doi. 10.1093/nar/gkad926

By:

Kong, Xiangren;
Liu, Chao;
Zhang, Zuzhen;
Cheng, Meiqi;
Mei, Zhijun;
Li, Xiangdong;
Liu, Peng;
Diao, Lihong;
Ma, Yajie;
Jiang, Peng;
Kong, Xiangya;
Nie, Shiyan;
Guo, Yingzi;
Wang, Ze;
Zhang, Xinlei;
Wang, Yan;
Tang, Liujun;
Guo, Shuzhen;
Liu, Zhongyang;
Li, Dong

Publication type:

Article

eRNAbase: a comprehensive database for decoding the regulatory eRNAs in human and mouse.

Published in:

Nucleic Acids Research, 2024, v. 52, n. D1, p. D81, doi. 10.1093/nar/gkad925

By:

Song, Chao;
Zhang, Guorui;
Mu, Xinxin;
Feng, Chenchen;
Zhang, Qinyi;
Song, Shuang;
Zhang, Yuexin;
Yin, Mingxue;
Zhang, Hang;
Tang, Huifang;
Li, Chunquan

Publication type:

Article