Works matching IS 0305-1048 AND VI 48 AND IP 12 AND DT 2020

Results: 49

Pathological mutations in PNKP trigger defects in DNA single-strand break repair but not DNA double-strand break repair.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6672, doi. 10.1093/nar/gkaa489

By:

Kalasova, Ilona;
Hailstone, Richard;
Bublitz, Janin;
Bogantes, Jovel;
Hofmann, Winfried;
Leal, Alejandro;
Hanzlikova, Hana;
Caldecott, Keith W

Publication type:

Article

Topoisomerase II contributes to DNA secondary structure-mediated double-stranded breaks.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6654, doi. 10.1093/nar/gkaa483

By:

Szlachta, Karol;
Manukyan, Arkadi;
Raimer, Heather M;
Singh, Sandeep;
Salamon, Anita;
Guo, Wenying;
Lobachev, Kirill S;
Wang, Yuh-Hwa

Publication type:

Article

Dynamic topology of double-stranded telomeric DNA studied by single-molecule manipulation in vitro.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6458, doi. 10.1093/nar/gkaa479

By:

Zhang, Xiaonong;
Zhang, Yingqi;
Zhang, Wenke

Publication type:

Article

5′ modifications to CRISPR–Cas9 gRNA can change the dynamics and size of R-loops and inhibit DNA cleavage.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6811, doi. 10.1093/nar/gkaa477

By:

Mullally, Grace;
van Aelst, Kara;
Naqvi, Mohsin M;
Diffin, Fiona M;
Karvelis, Tautvydas;
Gasiunas, Giedrius;
Siksnys, Virginijus;
Szczelkun, Mark D

Publication type:

Article

Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6715, doi. 10.1093/nar/gkaa473

By:

Cao, Bo;
Wu, Xiaolin;
Zhou, Jieliang;
Wu, Hang;
Liu, Lili;
Zhang, Qinghua;
DeMott, Michael S;
Gu, Chen;
Wang, Lianrong;
You, Delin;
Dedon, Peter C

Publication type:

Article

Nitrosative stress inhibits aminoacylation and editing activities of mitochondrial threonyl-tRNA synthetase by S-nitrosation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6799, doi. 10.1093/nar/gkaa471

By:

Zheng, Wen-Qiang;
Zhang, Yuying;
Yao, Qin;
Chen, Yuzhe;
Qiao, Xinhua;
Wang, En-Duo;
Chen, Chang;
Zhou, Xiao-Long

Publication type:

Article

Cross-editing by a tRNA synthetase allows vertebrates to abundantly express mischargeable tRNA without causing mistranslation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6445, doi. 10.1093/nar/gkaa469

By:

Chen, Meirong;
Kuhle, Bernhard;
Diedrich, Jolene;
Liu, Ze;
Moresco, James J;
Yates III, John R;
Pan, Tao;
Yang, Xiang-Lei

Publication type:

Article

Topological constraints of RNA pseudoknotted and loop-kissing motifs: applications to three-dimensional structure prediction.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6503, doi. 10.1093/nar/gkaa463

By:

Xu, Xiaojun;
Chen, Shi-Jie

Publication type:

Article

Mapping domains of ARS2 critical for its RNA decay capacity.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6943, doi. 10.1093/nar/gkaa445

By:

Melko, Mireille;
Winczura, Kinga;
Rouvière, Jérôme Olivier;
Oborská-Oplová, Michaela;
Andersen, Pia K;
Heick Jensen, Torben

Publication type:

Article

The role of 3′UTR-protein complexes in the regulation of protein multifunctionality and subcellular localization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6491, doi. 10.1093/nar/gkaa462

By:

Ribeiro, Diogo M;
Prod'homme, Alexis;
Teixeira, Adrien;
Zanzoni, Andreas;
Brun, Christine

Publication type:

Article

Crystal structure and interactions of the Tof1–Csm3 (Timeless–Tipin) fork protection complex.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6996, doi. 10.1093/nar/gkaa456

By:

Grabarczyk, Daniel B

Publication type:

Article

Regulatory sharing between estrogen receptor α bound enhancers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6597, doi. 10.1093/nar/gkaa454

By:

Carleton, Julia B;
Ginley-Hidinger, Matthew;
Berrett, Kristofer C;
Layer, Ryan M;
Quinlan, Aaron R;
Gertz, Jason

Publication type:

Article

Identification of a novel nucleolar protein complex required for mitotic chromosome segregation through centromeric accumulation of Aurora B.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6583, doi. 10.1093/nar/gkaa449

By:

Fujimura, Akiko;
Hayashi, Yuki;
Kato, Kazashi;
Kogure, Yuichiro;
Kameyama, Mutsuro;
Shimamoto, Haruka;
Daitoku, Hiroaki;
Fukamizu, Akiyoshi;
Hirota, Toru;
Kimura, Keiji

Publication type:

Article

NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6481, doi. 10.1093/nar/gkaa448

By:

Thody, Joshua;
Folkes, Leighton;
Moulton, Vincent

Publication type:

Article

Studying RNA–DNA interactome by Red-C identifies noncoding RNAs associated with various chromatin types and reveals transcription dynamics.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6699, doi. 10.1093/nar/gkaa457

By:

Gavrilov, Alexey A;
Zharikova, Anastasiya A;
Galitsyna, Aleksandra A;
Luzhin, Artem V;
Rubanova, Natalia M;
Golov, Arkadiy K;
Petrova, Nadezhda V;
Logacheva, Maria D;
Kantidze, Omar L;
Ulianov, Sergey V;
Magnitov, Mikhail D;
Mironov, Andrey A;
Razin, Sergey V

Publication type:

Article

E. coli Rep helicase and RecA recombinase unwind G4 DNA and are important for resistance to G4-stabilizing ligands.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6640, doi. 10.1093/nar/gkaa442

By:

Paul, Tapas;
Voter, Andrew F;
Cueny, Rachel R;
Gavrilov, Momčilo;
Ha, Taekjip;
Keck, James L;
Myong, Sua

Publication type:

Article

HRP2–DPF3a–BAF complex coordinates histone modification and chromatin remodeling to regulate myogenic gene transcription.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6563, doi. 10.1093/nar/gkaa441

By:

Zhu, Xu;
Lan, Bingxue;
Yi, Xianfu;
He, Chaoran;
Dang, Lin;
Zhou, Xingquan;
Lu, Yumei;
Sun, Yongzhan;
Liu, Zhiheng;
Bai, Xue;
Zhang, Kai;
Li, Bing;
Li, Mulin Jun;
Chen, Yupeng;
Zhang, Lirong

Publication type:

Article

Macrophage development and activation involve coordinated intron retention in key inflammatory regulators.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6513, doi. 10.1093/nar/gkaa435

By:

Green, Immanuel D;
Pinello, Natalia;
Song, Renhua;
Lee, Quintin;
Halstead, James M;
Kwok, Chau-To;
Wong, Alex C H;
Nair, Shalima S;
Clark, Susan J;
Roediger, Ben;
Schmitz, Ulf;
Larance, Mark;
Hayashi, Rippei;
Rasko, John E J;
Wong, Justin J-L

Publication type:

Article

MDM2's dual mRNA binding domains co-ordinate its oncogenic and tumour suppressor activities.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6775, doi. 10.1093/nar/gkaa431

By:

Gnanasundram, Sivakumar Vadivel;
Malbert-Colas, Laurence;
Chen, Sa;
Fusée, Leila;
Daskalogianni, Chrysoula;
Muller, Petr;
Salomao, Norman;
Fåhraeus, Robin

Publication type:

Article

Translation at first sight: the influence of leading codons.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6931, doi. 10.1093/nar/gkaa430

By:

Osterman, Ilya A;
Chervontseva, Zoe S;
Evfratov, Sergey A;
Sorokina, Alena V;
Rodin, Vladimir A;
Rubtsova, Maria P;
Komarova, Ekaterina S;
Zatsepin, Timofei S;
Kabilov, Marsel R;
Bogdanov, Alexey A;
Gelfand, Mikhail S;
Dontsova, Olga A;
Sergiev, Petr V

Publication type:

Article

CryoEM structures of human CMG–ATPγS–DNA and CMG–AND-1 complexes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6980, doi. 10.1093/nar/gkaa429

By:

Rzechorzek, Neil J;
Hardwick, Steven W;
Jatikusumo, Vincentius A;
Chirgadze, Dimitri Y;
Pellegrini, Luca

Publication type:

Article

Molecular dynamics study of the recognition of ATP by nucleic acid aptamers.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6471, doi. 10.1093/nar/gkaa428

By:

Xie, Ya-chen;
Eriksson, Leif A;
Zhang, Ru-bo

Publication type:

Article

The conformational landscape of transcription intermediates involved in the regulation of the ZMP-sensing riboswitch from Thermosinus carboxydivorans.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6970, doi. 10.1093/nar/gkaa427

By:

Binas, Oliver;
Schamber, Tatjana;
Schwalbe, Harald

Publication type:

Article

The translational activator Sov1 coordinates mitochondrial gene expression with mitoribosome biogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6759, doi. 10.1093/nar/gkaa424

By:

Seshadri, Suhas R;
Banarjee, Chitra;
Barros, Mario H;
Fontanesi, Flavia

Publication type:

Article

Analyzing pre-symptomatic tissue to gain insights into the molecular and mechanistic origins of late-onset degenerative trinucleotide repeat disease.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6740, doi. 10.1093/nar/gkaa422

By:

Chu, Yongjun;
Hu, Jiaxin;
Liang, Hanquan;
Kanchwala, Mohammed;
Xing, Chao;
Beebe, Walter;
Bowman, C Bradley;
Gong, Xin;
Corey, David R;
Mootha, V Vinod

Publication type:

Article

Sequence-dependent dynamics of synthetic and endogenous RSSs in V(D)J recombination.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6726, doi. 10.1093/nar/gkaa418

By:

Hirokawa, Soichi;
Chure, Griffin;
Belliveau, Nathan M;
Lovely, Geoffrey A;
Anaya, Michael;
Schatz, David G;
Baltimore, David;
Phillips, Rob

Publication type:

Article

Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e72, doi. 10.1093/nar/gkaa417

By:

Poppleton, Erik;
Bohlin, Joakim;
Matthies, Michael;
Sharma, Shuchi;
Zhang, Fei;
Šulc, Petr

Publication type:

Article

HrrSA orchestrates a systemic response to heme and determines prioritization of terminal cytochrome oxidase expression.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6547, doi. 10.1093/nar/gkaa415

By:

Keppel, Marc;
Hünnefeld, Max;
Filipchyk, Andrei;
Viets, Ulrike;
Davoudi, Cedric-Farhad;
Krüger, Aileen;
Mack, Christina;
Pfeifer, Eugen;
Polen, Tino;
Baumgart, Meike;
Bott, Michael;
Frunzke, Julia

Publication type:

Article

Noncoding Y RNAs regulate the levels, subcellular distribution and protein interactions of their Ro60 autoantigen partner.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6919, doi. 10.1093/nar/gkaa414

By:

Leng, Yuanyuan;
Sim, Soyeong;
Magidson, Valentin;
Wolin, Sandra L

Publication type:

Article

FUS ALS-causative mutations impair FUS autoregulation and splicing factor networks through intron retention.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6889, doi. 10.1093/nar/gkaa410

By:

Humphrey, Jack;
Birsa, Nicol;
Milioto, Carmelo;
McLaughlin, Martha;
Ule, Agnieszka M;
Robaldo, David;
Eberle, Andrea B;
Kräuchi, Rahel;
Bentham, Matthew;
Brown, Anna-Leigh;
Jarvis, Seth;
Bodo, Cristian;
Garone, Maria G;
Devoy, Anny;
Soraru, Gianni;
Rosa, Alessandro;
Bozzoni, Irene;
Fisher, Elizabeth M C;
Mühlemann, Oliver;
Schiavo, Giampietro

Publication type:

Article

MEIOK21: a new component of meiotic recombination bridges required for spermatogenesis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6624, doi. 10.1093/nar/gkaa406

By:

Shang, Yongliang;
Huang, Tao;
Liu, Hongbin;
Liu, Yanlei;
Liang, Heng;
Yu, Xiaoxia;
Li, Mengjing;
Zhai, Binyuan;
Yang, Xiao;
Wei, Yudong;
Wang, Guoqiang;
Chen, Zijiang;
Wang, Shunxin;
Zhang, Liangran

Publication type:

Article

The hyperthermophilic partners Nanoarchaeum and Ignicoccus stabilize their tRNA T-loops via different but structurally equivalent modifications.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6906, doi. 10.1093/nar/gkaa411

By:

Rose, Simon;
Auxilien, Sylvie;
Havelund, Jesper F;
Kirpekar, Finn;
Huber, Harald;
Grosjean, Henri;
Douthwaite, Stephen

Publication type:

Article

Modular protein-oligonucleotide signal exchange.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6431, doi. 10.1093/nar/gkaa405

By:

Agrawal, Deepak K;
Schulman, Rebecca

Publication type:

Article

Lead-seq: transcriptome-wide structure probing in vivo using lead(II) ions.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e71, doi. 10.1093/nar/gkaa404

By:

Twittenhoff, Christian;
Brandenburg, Vivian B;
Righetti, Francesco;
Nuss, Aaron M;
Mosig, Axel;
Dersch, Petra;
Narberhaus, Franz

Publication type:

Article

Restriction endonucleases that cleave RNA/DNA heteroduplexes bind dsDNA in A-like conformation.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6954, doi. 10.1093/nar/gkaa403

By:

Kisiala, Marlena;
Kowalska, Monika;
Pastor, Michal;
Korza, Henryk J;
Czapinska, Honorata;
Bochtler, Matthias

Publication type:

Article

Mammalian Nudix proteins cleave nucleotide metabolite caps on RNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6788, doi. 10.1093/nar/gkaa402

By:

Sharma, Sunny;
Grudzien-Nogalska, Ewa;
Hamilton, Keith;
Jiao, Xinfu;
Yang, Jun;
Tong, Liang;
Kiledjian, Megerditch

Publication type:

Article

A bipartite thermodynamic-kinetic contribution by an activating mutation to RDF-independent excision by a phage serine integrase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6413, doi. 10.1093/nar/gkaa401

By:

Fan, Hsiu-Fang;
Su, Bo-Yu;
Ma, Chien-Hui;
Rowley, Paul A;
Jayaram, Makkuni

Publication type:

Article

Deep sequencing of non-enzymatic RNA primer extension.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e70, doi. 10.1093/nar/gkaa400

By:

Duzdevich, Daniel;
Carr, Christopher E;
Szostak, Jack W

Publication type:

Article

PolyA-miner: accurate assessment of differential alternative poly-adenylation from 3′Seq data using vector projections and non-negative matrix factorization.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e69, doi. 10.1093/nar/gkaa398

By:

Yalamanchili, Hari Krishna;
Alcott, Callison E;
Ji, Ping;
Wagner, Eric J;
Zoghbi, Huda Y;
Liu, Zhandong

Publication type:

Article

DNA damage invokes mitophagy through a pathway involving Spata18.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6611, doi. 10.1093/nar/gkaa393

By:

Dan, Xiuli;
Babbar, Mansi;
Moore, Anthony;
Wechter, Noah;
Tian, Jingyan;
Mohanty, Joy G;
Croteau, Deborah L;
Bohr, Vilhelm A

Publication type:

Article

Interaction between RECQL4 and OGG1 promotes repair of oxidative base lesion 8-oxoG and is regulated by SIRT1 deacetylase.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6530, doi. 10.1093/nar/gkaa392

By:

Duan, Shunlei;
Han, Xuerui;
Akbari, Mansour;
Croteau, Deborah L;
Rasmussen, Lene Juel;
Bohr, Vilhelm A

Publication type:

Article

NF90 modulates processing of a subset of human pri-miRNAs.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6874, doi. 10.1093/nar/gkaa386

By:

Grasso, Giuseppa;
Higuchi, Takuma;
Mac, Victor;
Barbier, Jérôme;
Helsmoortel, Marion;
Lorenzi, Claudio;
Sanchez, Gabriel;
Bello, Maxime;
Ritchie, William;
Sakamoto, Shuji;
Kiernan, Rosemary

Publication type:

Article

G3BP1-linked mRNA partitioning supports selective protein synthesis in response to oxidative stress.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6855, doi. 10.1093/nar/gkaa376

By:

Somasekharan, Syam Prakash;
Zhang, Fan;
Saxena, Neetu;
Huang, Jia Ni;
Kuo, I-Chih;
Low, Caitlin;
Bell, Robert;
Adomat, Hans;
Stoynov, Nikolay;
Foster, Leonard;
Gleave, Martin;
Sorensen, Poul H

Publication type:

Article

SERRATE interacts with the nuclear exosome targeting (NEXT) complex to degrade primary miRNA precursors in Arabidopsis.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6839, doi. 10.1093/nar/gkaa373

By:

Bajczyk, Mateusz;
Lange, Heike;
Bielewicz, Dawid;
Szewc, Lukasz;
Bhat, Susheel S;
Dolata, Jakub;
Kuhn, Lauriane;
Szweykowska-Kulinska, Zofia;
Gagliardi, Dominique;
Jarmolowski, Artur

Publication type:

Article

Transposable elements employ distinct integration strategies with respect to transcriptional landscapes in eukaryotic genomes.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6685, doi. 10.1093/nar/gkaa370

By:

Zhang, Xinyan;
Zhao, Meixia;
McCarty, Donald R;
Lisch, Damon

Publication type:

Article

Matrix factorization and transfer learning uncover regulatory biology across multiple single-cell ATAC-seq data sets.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e68, doi. 10.1093/nar/gkaa349

By:

Erbe, Rossin;
Kessler, Michael D;
Favorov, Alexander V;
Easwaran, Hariharan;
Gaykalova, Daria A;
Fertig, Elana J

Publication type:

Article

Genetically encoded betaxanthin-based small-molecular fluorescent reporter for mammalian cells.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. e67, doi. 10.1093/nar/gkaa342

By:

Stücheli, Pascal;
Sieber, Simon;
Fuchs, David W;
Scheller, Leo;
Strittmatter, Tobias;
Saxena, Pratik;
Gademann, Karl;
Fussenegger, Martin

Publication type:

Article

Dengue virus targets RBM10 deregulating host cell splicing and innate immune response.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6824, doi. 10.1093/nar/gkaa340

By:

Pozzi, Berta;
Bragado, Laureano;
Mammi, Pablo;
Torti, María Florencia;
Gaioli, Nicolás;
Gebhard, Leopoldo G;
García Solá, Martín E;
Vaz-Drago, Rita;
Iglesias, Néstor G;
García, Cybele C;
Gamarnik, Andrea V;
Srebrow, Anabella

Publication type:

Article

Synthetic promoter design in Escherichia coli based on a deep generative network.

Published in:

Nucleic Acids Research, 2020, v. 48, n. 12, p. 6403, doi. 10.1093/nar/gkaa325

By:

Wang, Ye;
Wang, Haochen;
Wei, Lei;
Li, Shuailin;
Liu, Liyang;
Wang, Xiaowo

Publication type:

Article