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The nucleosome landscape of Plasmodium falciparum reveals chromatin architecture and dynamics of regulatory sequences.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2110, doi. 10.1093/nar/gkv1214
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- Article
Categorical spectral analysis of periodicity in nucleosomal DNA.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2047, doi. 10.1093/nar/gkw101
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Molecular sled sequences are common in mammalian proteins.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2266, doi. 10.1093/nar/gkw035
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Programmable control of bacterial gene expression with the combined CRISPR and antisense RNA system.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2462, doi. 10.1093/nar/gkw056
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Corrigendum.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2474, doi. 10.1093/nar/gkv1293
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- Article
Isolation of a non-genomic origin fluoroquinolone responsive regulatory element using a combinatorial bioengineering approach.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2451, doi. 10.1093/nar/gkw029
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Structure of the mammalian antimicrobial peptide Bac7(1-16) bound within the exit tunnel of a bacterial ribosome.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2429, doi. 10.1093/nar/gkv1545
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Structures of proline-rich peptides bound to the ribosome reveal a common mechanism of protein synthesis inhibition.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2439, doi. 10.1093/nar/gkw018
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Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2417, doi. 10.1093/nar/gkv1539
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- Article
Novel RNA-binding activity of MYF5 enhances Ccnd1/Cyclin D1 mRNA translation during myogenesis.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2393, doi. 10.1093/nar/gkw023
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Structural characterization of a dimer of RNA duplexes composed of 8-bromoguanosine modified CGG trinucleotide repeats: a novel architecture of RNA quadruplexes.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2409, doi. 10.1093/nar/gkv1534
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LncRNA OIP5-AS1/cyrano sponges RNA-binding protein HuR.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2378, doi. 10.1093/nar/gkw017
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Attachment of ribosomal complexes and retrograde scanning during initiation on the Halastavi 'arva virus IRES.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2362, doi. 10.1093/nar/gkw016
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- Article
Hydroxymethyluracil modifications enhance the flexibility and hydrophilicity of double-stranded DNA.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2085, doi. 10.1093/nar/gkv1199
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A short conserved motif in ALYREF directs cap- and EJC-dependent assembly of export complexes on spliced mRNAs.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2348, doi. 10.1093/nar/gkw009
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Structural and mutational analysis of archaeal ATP-dependent RNA ligase identifies amino acids required for RNA binding and catalysis.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2337, doi. 10.1093/nar/gkw094
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Substrate recognition and cleavage-site selection by a single-subunit protein-only RNase P.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2323, doi. 10.1093/nar/gkw080
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Biochemical characterization of a multi-drug resistant HIV-1 subtype AG reverse transcriptase: antagonism of AZT discrimination and excision pathways and sensitivity to RNase H inhibitors.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2310, doi. 10.1093/nar/gkw060
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Kinetic mechanism and fidelity of nick sealing by Escherichia coli NAD<sup>+</sup>-dependent DNA ligase (LigA).
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2298, doi. 10.1093/nar/gkw049
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αCP binding to a cytosine-rich subset of polypyrimidine tracts drives a novel pathway of cassette exon splicing in the mammalian transcriptome.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2283, doi. 10.1093/nar/gkw088
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Small activating RNA binds to the genomic target site in a seed-region-dependent manner.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2274, doi. 10.1093/nar/gkw076
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Hepatotoxicity of high affinity gapmer antisense oligonucleotides is mediated by RNase H1 dependent promiscuous reduction of very long pre-mRNA transcripts.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2093, doi. 10.1093/nar/gkv1210
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Delineation of metabolic gene clusters in plant genomes by chromatin signatures.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2255, doi. 10.1093/nar/gkw100
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Comparative transcriptomics elucidates adaptive phenol tolerance and utilization in lipid-accumulating Rhodococcus opacus PD630.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2240, doi. 10.1093/nar/gkw055
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The structure and DNA-binding properties of Mgm101 from a yeast with a linear mitochondrial genome.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2227, doi. 10.1093/nar/gkv1529
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Hepatoma-derived growth factor-related protein 2 promotes DNA repair by homologous recombination.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2214, doi. 10.1093/nar/gkv1526
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S. cerevisiae Mre11 recruits conjugated SUMO moieties to facilitate the assembly and function of the Mre11-Rad50-Xrs2 complex.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2199, doi. 10.1093/nar/gkv1523
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3CAPS - a structural AP-site analogue as a tool to investigate DNA base excision repair.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2187, doi. 10.1093/nar/gkv1520
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Molecular basis for DNA strand displacement by NHEJ repair polymerases.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2173, doi. 10.1093/nar/gkv965
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The quorum-sensing regulator ComA from Bacillus subtilis activates transcription using topologically distinct DNA motifs.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2160, doi. 10.1093/nar/gkv1242
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A novel role for the histone acetyltransferase Hat1 in the CENP-A/CID assembly pathway in Drosophila melanogaster.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2145, doi. 10.1093/nar/gkv1235
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RING1A and BMI1 bookmark active genes via ubiquitination of chromatin-associated proteins.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2136, doi. 10.1093/nar/gkv1223
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The CSB chromatin remodeler and CTCF architectural protein cooperate in response to oxidative stress.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2125, doi. 10.1093/nar/gkv1219
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The landscape of somatic mutations in protein coding genes in apparently benign human tissues carries signatures of relaxed purifying selection.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2075, doi. 10.1093/nar/gkw086
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Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2058, doi. 10.1093/nar/gkw051
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Discovering hotspots in functional genomic data superposed on 3D chromatin configuration reconstructions.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2028, doi. 10.1093/nar/gkw070
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The structure and intermolecular forces of DNA condensates.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2036, doi. 10.1093/nar/gkw081
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PON-mt-tRNA: a multifactorial probability-based method for classification of mitochondrial tRNA variations.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2020, doi. 10.1093/nar/gkw046
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G-quadruplexes and helicases.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1989, doi. 10.1093/nar/gkw079
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Next-generation bis-locked nucleic acids with stacking linker and 2'-glycylamino-LNA show enhanced DNA invasion into supercoiled duplexes.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 2007, doi. 10.1093/nar/gkw021
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An ultra-dense library resource for rapid deconvolution of mutations that cause phenotypes in Escherichia coli.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1131
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Reversible acetylation on Lys501 regulates the activity of RNase II.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1979, doi. 10.1093/nar/gkw053
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EMERGE: a flexible modelling framework to predict genomic regulatory elements from genomic signatures.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1144
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Modeling co-occupancy of transcription factors using chromatin features.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1281
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csaw: a Bioconductor package for differential binding analysis of ChIP-seq data using sliding windows.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1191
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Comprehensive evaluation of fusion transcript detection algorithms and a meta-caller to combine top performing methods in paired-end RNA-seq data.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1234
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Multiplex pairwise assembly of array-derived DNA oligonucleotides.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1177
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Simultaneous characterization of sense and antisense genomic processes by the double-stranded hidden Markov model.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1184
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Estimate of within population incremental selection through branch imbalance in lineage trees.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1198
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Systematic identification and correction of annotation errors in the genetic interaction map of Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2016, v. 44, n. 5, p. 1, doi. 10.1093/nar/gkv1284
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