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Reprogramming homing endonuclease specificity through computational design and directed evolution.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2564, doi. 10.1093/nar/gkt1212
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ARF induction in response to DNA strand breaks is regulated by PARP1.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2320, doi. 10.1093/nar/gkt1185
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Conformations of p53 response elements in solution deduced using site-directed spin labeling and Monte Carlo sampling.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2789, doi. 10.1093/nar/gkt1219
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Translation rate is controlled by coupled trade-offs between site accessibility, selective RNA unfolding and sliding at upstream standby sites.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2646, doi. 10.1093/nar/gkt1139
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Phylo SI: a new genome-wide approach for prokaryotic phylogeny.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2391, doi. 10.1093/nar/gkt1138
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Protein–DNA binding: complexities and multi-protein codes.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2099, doi. 10.1093/nar/gkt1112
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Trans-splicing and RNA editing of LSU rRNA in Diplonema mitochondria.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2660, doi. 10.1093/nar/gkt1152
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Subscriptions.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. iii, doi. 10.1093/nar/gku062
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Vespucci: a system for building annotated databases of nascent transcripts.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2433, doi. 10.1093/nar/gkt1237
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Genetic robustness and functional evolution of gene duplicates.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2405, doi. 10.1093/nar/gkt1200
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RNA-dependent RNA polymerase of Japanese encephalitis virus binds the initiator nucleotide GTP to form a mechanistically important pre-initiation state.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2758, doi. 10.1093/nar/gkt1106
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Quantifying the role of steric constraints in nucleosome positioning.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2147, doi. 10.1093/nar/gkt1239
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Poly(A) RNA and Paip2 act as allosteric regulators of poly(A)-binding protein.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2697, doi. 10.1093/nar/gkt1170
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Structural mechanism of transcription regulation of the Staphylococcus aureus multidrug efflux operon mepRA by the MarR family repressor MepR.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2774, doi. 10.1093/nar/gkt1215
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Intramolecular binding mode of the C-terminus of Escherichia coli single-stranded DNA binding protein determined by nuclear magnetic resonance spectroscopy.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2750, doi. 10.1093/nar/gkt1238
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Swi5-Sfr1 protein stimulates Rad51-mediated DNA strand exchange reaction through organization of DNA bases in the presynaptic filament.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2358, doi. 10.1093/nar/gkt1257
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Structural insight into DNA binding and oligomerization of the multifunctional Cox protein of bacteriophage P2.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2725, doi. 10.1093/nar/gkt1119
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Identification of truncated forms of U1 snRNA reveals a novel RNA degradation pathway during snRNP biogenesis.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2708, doi. 10.1093/nar/gkt1271
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High-throughput, cost-effective verification of structural DNA assembly.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. e22, doi. 10.1093/nar/gkt1088
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The output of the tRNA modification pathways controlled by the Escherichia coli MnmEG and MnmC enzymes depends on the growth conditions and the tRNA species.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2602, doi. 10.1093/nar/gkt1228
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DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2270, doi. 10.1093/nar/gkt1174
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Molecular recognition by the KIX domain and its role in gene regulation.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2112, doi. 10.1093/nar/gkt1147
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Novel method for site-specific induction of oxidative DNA damage reveals differences in recruitment of repair proteins to heterochromatin and euchromatin.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2330, doi. 10.1093/nar/gkt1233
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Modification of picornavirus genomic RNA using ‘click’ chemistry shows that unlinking of the VPg peptide is dispensable for translation and replication of the incoming viral RNA.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2473, doi. 10.1093/nar/gkt1162
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megaTALs: a rare-cleaving nuclease architecture for therapeutic genome engineering.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2591, doi. 10.1093/nar/gkt1224
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Human RECQ5 helicase promotes repair of DNA double-strand breaks by synthesis-dependent strand annealing.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2380, doi. 10.1093/nar/gkt1263
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TRF1 and TRF2 use different mechanisms to find telomeric DNA but share a novel mechanism to search for protein partners at telomeres.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2493, doi. 10.1093/nar/gkt1132
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UnSplicer: mapping spliced RNA-seq reads in compact genomes and filtering noisy splicing.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. e25, doi. 10.1093/nar/gkt1141
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The complex methylome of the human gastric pathogen Helicobacter pylori.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2415, doi. 10.1093/nar/gkt1201
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The chromatin remodeller CHD8 is required for E2F-dependent transcription activation of S-phase genes.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2185, doi. 10.1093/nar/gkt1161
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Collaboration between CpG sites is needed for stable somatic inheritance of DNA methylation states.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2235, doi. 10.1093/nar/gkt1235
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One-step zero-background IgG reformatting of phage-displayed antibody fragments enabling rapid and high-throughput lead identification.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. e26, doi. 10.1093/nar/gkt1142
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Transcription factor abundance controlled by an auto-regulatory mechanism involving a transcription start site switch.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2171, doi. 10.1093/nar/gkt1136
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Adaptation of the Haloarcula hispanica CRISPR-Cas system to a purified virus strictly requires a priming process.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2483, doi. 10.1093/nar/gkt1154
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The dual role of HOP2 in mammalian meiotic homologous recombination.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2346, doi. 10.1093/nar/gkt1234
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Differences between cotranscriptional and free riboswitch folding.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2687, doi. 10.1093/nar/gkt1213
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The Ddx5 and Ddx17 RNA helicases are cornerstones in the complex regulatory array of steroid hormone-signaling pathways.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2197, doi. 10.1093/nar/gkt1216
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Nucleic Acids Research.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. i, doi. 10.1093/nar/gku015
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A cypovirus VP5 displays the RNA chaperone-like activity that destabilizes RNA helices and accelerates strand annealing.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2538, doi. 10.1093/nar/gkt1256
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Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. e24, doi. 10.1093/nar/gkt1105
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Identification of genes involved in low aminoglycoside-induced SOS response in Vibrio cholerae: a role for transcription stalling and Mfd helicase.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2366, doi. 10.1093/nar/gkt1259
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Highly specific and sensitive method for measuring nucleotide excision repair kinetics of ultraviolet photoproducts in human cells.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. e29, doi. 10.1093/nar/gkt1179
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Differential contribution of basic residues to HIV-1 nucleocapsid protein’s nucleic acid chaperone function and retroviral replication.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2525, doi. 10.1093/nar/gkt1227
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Discrimination between thermodynamic models of cis-regulation using transcription factor occupancy data.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2224, doi. 10.1093/nar/gkt1230
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Bacillus subtilis RecA and its accessory factors, RecF, RecO, RecR and RecX, are required for spore resistance to DNA double-strand break.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2295
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Expanding the catalog of cas genes with metagenomes.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2448, doi. 10.1093/nar/gkt1262
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Multiple replication origins with diverse control mechanisms in Haloarcula hispanica.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2282, doi. 10.1093/nar/gkt1214
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Structural determinants of DNA recognition by plant MADS-domain transcription factors.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2138, doi. 10.1093/nar/gkt1172
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Nucleotide selection by the Y-family DNA polymerase Dpo4 involves template translocation and misalignment.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2555, doi. 10.1093/nar/gkt1149
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Structure-based model for light-harvesting properties of nucleic acid nanostructures.
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- Nucleic Acids Research, 2014, v. 42, n. 4, p. 2159, doi. 10.1093/nar/gkt1269
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