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The architecture of eukaryotic translation.
- Published in:
- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10098, doi. 10.1093/nar/gks825
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- Article
The THO complex cooperates with the nuclear RNA surveillance machinery to control small nucleolar RNA expression.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10240, doi. 10.1093/nar/gks838
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- Article
Complementary strand relocation may play vital roles in RecA-based homology recognition.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10441, doi. 10.1093/nar/gks769
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DNA breathing dynamics distinguish binding from nonbinding consensus sites for transcription factor YY1 in cells.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10116, doi. 10.1093/nar/gks758
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- Article
A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10084, doi. 10.1093/nar/gks804
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- Article
The antibiotic Furvina® targets the P-site of 30S ribosomal subunits and inhibits translation initiation displaying start codon bias.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10366, doi. 10.1093/nar/gks822
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- Article
Promoter propagation in prokaryotes.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10032, doi. 10.1093/nar/gks787
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miR-182 inhibits Schwann cell proliferation and migration by targeting FGF9 and NTM, respectively at an early stage following sciatic nerve injury.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10356, doi. 10.1093/nar/gks750
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MutSβ and histone deacetylase complexes promote expansions of trinucleotide repeats in human cells.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10324, doi. 10.1093/nar/gks810
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- Article
RTL-P: a sensitive approach for detecting sites of 2′-O-methylation in RNA molecules.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e157, doi. 10.1093/nar/gks698
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- Article
DOT1A-dependent H3K76 methylation is required for replication regulation in Trypanosoma brucei.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10302, doi. 10.1093/nar/gks801
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Metal and ligand binding to the HIV-RNase H active site are remotely monitored by Ile556.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10543, doi. 10.1093/nar/gks791
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- Article
Crystal structure of RlmM, the 2′O-ribose methyltransferase for C2498 of Escherichia coli 23S rRNA.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10507, doi. 10.1093/nar/gks727
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- Article
PARP activation regulates the RNA-binding protein NONO in the DNA damage response to DNA double-strand breaks.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10287, doi. 10.1093/nar/gks798
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- Article
PALB2 self-interaction controls homologous recombination.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10312, doi. 10.1093/nar/gks807
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Multipartite control of the DNA translocase, Mfd.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10408, doi. 10.1093/nar/gks775
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X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10554, doi. 10.1093/nar/gks826
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A global sampling approach to designing and reengineering RNA secondary structures.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10041, doi. 10.1093/nar/gks768
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Recognition of the 70S ribosome and polysome by the RNA degradosome in Escherichia coli.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10417, doi. 10.1093/nar/gks739
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- Article
Structural basis for the substrate recognition and catalysis of peptidyl-tRNA hydrolase.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10521, doi. 10.1093/nar/gks790
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- Article
The bacterial ribonuclease P holoenzyme requires specific, conserved residues for efficient catalysis and substrate positioning.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10384, doi. 10.1093/nar/gks744
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- Article
Solitary restriction endonucleases in prokaryotic genomes.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10107, doi. 10.1093/nar/gks853
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The slicing activity of miRNA-specific Argonautes is essential for the miRNA pathway in C. elegans.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10452, doi. 10.1093/nar/gks748
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- Article
En bloc transfer of polyubiquitin chains to PCNA in vitro is mediated by two different human E2–E3 pairs.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10394, doi. 10.1093/nar/gks763
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A high-throughput, quantitative cell-based screen for efficient tailoring of RNA device activity.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e154, doi. 10.1093/nar/gks636
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Misacylation of tRNA with methionine in Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10494, doi. 10.1093/nar/gks805
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Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10203, doi. 10.1093/nar/gks845
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RNAsnap™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e156, doi. 10.1093/nar/gks680
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- Article
Identification of a two-layer regulatory network of proliferation-related microRNAs in hepatoma cells.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10478, doi. 10.1093/nar/gks789
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Bacterial topoisomerase I and topoisomerase III relax supercoiled DNA via distinct pathways.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10432, doi. 10.1093/nar/gks780
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Mitochondrial DNA copy number is regulated in a tissue specific manner by DNA methylation of the nuclear-encoded DNA polymerase gamma A.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10124, doi. 10.1093/nar/gks770
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Repeat or not repeat?—Statistical validation of tandem repeat prediction in genomic sequences.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10005, doi. 10.1093/nar/gks726
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- Article
Yeast CAF-1 assembles histone (H3-H4)2 tetramers prior to DNA deposition.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10139, doi. 10.1093/nar/gks812
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Modelling and simulating generic RNA-Seq experiments with the flux simulator.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10073, doi. 10.1093/nar/gks666
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Chromatin modification by SUMO-1 stimulates the promoters of translation machinery genes.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10172, doi. 10.1093/nar/gks819
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Nucleosome dynamics: HMGB1 relaxes canonical nucleosome structure to facilitate estrogen receptor binding.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10161, doi. 10.1093/nar/gks815
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Dynamic changes in translational efficiency are deduced from codon usage of the transcriptome.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10053, doi. 10.1093/nar/gks772
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Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e158, doi. 10.1093/nar/gks699
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A hybrid G-quadruplex structure formed between RNA and DNA explains the extraordinary stability of the mitochondrial R-loop.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10334, doi. 10.1093/nar/gks802
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Benchmarking spliced alignment programs including Spaln2, an extended version of Spaln that incorporates additional species-specific features.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e161, doi. 10.1093/nar/gks708
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- Article
Cell-cycle-regulated control of VSG expression site silencing by histones and histone chaperones ASF1A and CAF-1b in Trypanosoma brucei.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10150, doi. 10.1093/nar/gks813
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Sequence analysis of a complete 1.66 Mb Prochlorococcus marinus MED4 genome cloned in yeast.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10375, doi. 10.1093/nar/gks823
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Assessing the biocompatibility of click-linked DNA in Escherichia coli.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10567, doi. 10.1093/nar/gks756
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Regulation of the nucleosome unwrapping rate controls DNA accessibility.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10215, doi. 10.1093/nar/gks747
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Dynamic regulation of HIV-1 mRNA populations analyzed by single-molecule enrichment and long-read sequencing.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10345, doi. 10.1093/nar/gks753
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Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. e160, doi. 10.1093/nar/gks697
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DNA repair endonuclease ERCC1–XPF as a novel therapeutic target to overcome chemoresistance in cancer therapy.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 9990, doi. 10.1093/nar/gks818
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Promoters active in interphase are bookmarked during mitosis by ubiquitination.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 10187, doi. 10.1093/nar/gks820
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Nucleic Acids Research - Editorial Board.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. ii, doi. 10.1093/nar/gks082
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- Article
New paradigms for conserved, multifactorial, cis-acting regulation of meiotic recombination.
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- Nucleic Acids Research, 2012, v. 40, n. 20, p. 9983, doi. 10.1093/nar/gks761
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- Article