Works in Nucleic Acids Research, 2010, Vol 38, Issue 15

Results: 39

The synthetic integron: an in vivo genetic shuffling device.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e153, doi. 10.1093/nar/gkq511

By:

Bikard, David;
Julié-Galau, Stéphane;
Cambray, Guillaume;
Mazel, Didier

Publication type:

Article

Helix–hairpin–helix protein MJ1434 from Methanocaldococcus jannaschii and EndoIV homologue TTC0482 from Thermus thermophilus HB27 do not process DNA uracil residues.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5119, doi. 10.1093/nar/gkq270

By:

Schomacher, Lars;
Smolorz, Sabine;
Ciirdaeva, Elena;
Ber, Svetlana;
Kramer, Wilfried;
Fritz, Hans-Joachim

Publication type:

Article

The catalytic function of the Rev1 dCMP transferase is required in a lesion-specific manner for translesion synthesis and base damage-induced mutagenesis.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5036, doi. 10.1093/nar/gkq225

By:

Zhou, Ying;
Wang, Jillian;
Zhang, Yanbin;
Wang, Zhigang

Publication type:

Article

Multivariate Cutoff Level Analysis (MultiCoLA) of large community data sets.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e155, doi. 10.1093/nar/gkq545

By:

Gobet, Angélique;
Quince, Christopher;
Ramette, Alban

Publication type:

Article

Functional selection and systematic analysis of intronic splicing elements identify active sequence motifs and associated splicing factors.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5152, doi. 10.1093/nar/gkq248

By:

Culler, Stephanie J.;
Hoff, Kevin G.;
Voelker, Rodger B.;
Berglund, J. Andrew;
Smolke, Christina D.

Publication type:

Article

Dynamics on multiple timescales in the RNA-directed RNA polymerase from the cystovirus φ6.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5105, doi. 10.1093/nar/gkq210

By:

Ren, Zhen;
Wang, Hsin;
Ghose, Ranajeet

Publication type:

Article

A SUMO-regulated activation function controls synergy of c-Myb through a repressor–activator switch leading to differential p300 recruitment.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4970, doi. 10.1093/nar/gkq245

By:

Molværsmyr, Ann-Kristin;
Sæther, Thomas;
Gilfillan, Siv;
Lorenzo, Petra Isabel;
Kvaløy, Heidi;
Matre, Vilborg;
Gabrielsen, Odd Stokke

Publication type:

Article

Sequence composition similarities with the 7SL RNA are highly predictive of functional genomic features.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4907, doi. 10.1093/nar/gkq234

By:

Paquet, Yanick;
Anderson, Alan

Publication type:

Article

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5075, doi. 10.1093/nar/gkq256

By:

Wang, Bin;
Guo, Guangwu;
Wang, Chao;
Lin, Ying;
Wang, Xiaoning;
Zhao, Mouming;
Guo, Yong;
He, Minghui;
Zhang, Yong;
Pan, Li

Publication type:

Article

FACADE: a fast and sensitive algorithm for the segmentation and calling of high resolution array CGH data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e157, doi. 10.1093/nar/gkq548

By:

Coe, Bradley P.;
Chari, Raj;
MacAulay, Calum;
Lam, Wan L.

Publication type:

Article

Small RNA class transition from siRNA/piRNA to miRNA during pre-implantation mouse development.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5141, doi. 10.1093/nar/gkq229

By:

Ohnishi, Yusuke;
Totoki, Yasushi;
Toyoda, Atsushi;
Watanabe, Toshiaki;
Yamamoto, Yasuhiro;
Tokunaga, Katsushi;
Sakaki, Yoshiyuki;
Sasaki, Hiroyuki;
Hohjoh, Hirohiko

Publication type:

Article

Quantitative analysis of processive RNA degradation by the archaeal RNA exosome.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5166, doi. 10.1093/nar/gkq238

By:

Hartung, Sophia;
Niederberger, Theresa;
Hartung, Marianne;
Tresch, Achim;
Hopfner, Karl-Peter

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 15, p. ii, doi. 10.1093/nar/gkq770
Publication type:: Article

Sequence-specific recognition of methylated DNA by human zinc-finger proteins.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5015, doi. 10.1093/nar/gkq280

By:

Sasai, Nobuhiro;
Nakao, Mitsuyoshi;
Defossez, Pierre-Antoine

Publication type:

Article

Transcriptional plasticity through differential assembly of a multiprotein activation complex.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4998, doi. 10.1093/nar/gkq257

By:

Cormier, Laëtitia;
Barbey, Régine;
Kuras, Laurent

Publication type:

Article

Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5177, doi. 10.1093/nar/gkq260

By:

Babiano, Reyes;
de la Cruz, Jesús

Publication type:

Article

Identifying compositionally homogeneous and nonhomogeneous domains within the human genome using a novel segmentation algorithm.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e158, doi. 10.1093/nar/gkq532

By:

Elhaik, Eran;
Graur, Dan;
Josić, Krešimir;
Landan, Giddy

Publication type:

Article

Characterization of an antagonistic switch between histone H3 lysine 27 methylation and acetylation in the transcriptional regulation of Polycomb group target genes.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4958, doi. 10.1093/nar/gkq244

By:

Pasini, Diego;
Malatesta, Martina;
Jung, Hye Ryung;
Walfridsson, Julian;
Willer, Anton;
Olsson, Linda;
Skotte, Julie;
Wutz, Anton;
Porse, Bo;
Jensen, Ole Nørregaard;
Helin, Kristian

Publication type:

Article

Constitutive fusion of ubiquitin to PCNA provides DNA damage tolerance independent of translesion polymerase activities.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5047, doi. 10.1093/nar/gkq239

By:

Pastushok, Landon;
Hanna, Michelle;
Xiao, Wei

Publication type:

Article

Alternate processing of Flt1 transcripts is directed by conserved cis-elements within an intronic region of FLT1 that reciprocally regulates splicing and polyadenylation.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5130, doi. 10.1093/nar/gkq198

By:

Thomas, Christie P.;
Raikwar, Nandita S.;
Kelley, Elizabeth A.;
Liu, Kang Z.

Publication type:

Article

A bacterial antirepressor with SH3 domain topology mimics operator DNA in sequestering the repressor DNA recognition helix.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5226, doi. 10.1093/nar/gkq277

By:

León, Esther;
Navarro-Avilés, Gloria;
Santiveri, Clara M.;
Flores-Flores, Cesar;
Rico, Manuel;
González, Carlos;
Murillo, Francisco J.;
Elías-Arnanz, Montserrat;
Jiménez, María Angeles;
Padmanabhan, S.

Publication type:

Article

Functional capacity of XRCC1 protein variants identified in DNA repair-deficient Chinese hamster ovary cell lines and the human population.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5023, doi. 10.1093/nar/gkq193

By:

Berquist, Brian R.;
Singh, Dharmendra Kumar;
Fan, Jinshui;
Kim, Daemyung;
Gillenwater, Elizabeth;
Kulkarni, Avanti;
Bohr, Vilhelm A.;
Ackerman, Eric J.;
Tomkinson, Alan E.;
Wilson, David M.

Publication type:

Article

Tetramolecular G-quadruplex formation pathways studied by electrospray mass spectrometry.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5217, doi. 10.1093/nar/gkq208

By:

Rosu, Frédéric;
Gabelica, Valérie;
Poncelet, Harmonie;
De Pauw, Edwin

Publication type:

Article

A flexible and efficient template format for circular consensus sequencing and SNP detection.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e159, doi. 10.1093/nar/gkq543

By:

Travers, Kevin J.;
Chin, Chen-Shan;
Rank, David R.;
Eid, John S.;
Turner, Stephen W.

Publication type:

Article

Effect of chemical modifications on modulation of gene expression by duplex antigene RNAs that are complementary to non-coding transcripts at gene promoters.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5242, doi. 10.1093/nar/gkq258

By:

Watts, Jonathan K.;
Yu, Dongbo;
Charisse, Klaus;
Montaillier, Christophe;
Potier, Pierre;
Manoharan, Muthiah;
Corey, David R.

Publication type:

Article

Zinc-finger nuclease-driven targeted integration into mammalian genomes using donors with limited chromosomal homology.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e152, doi. 10.1093/nar/gkq512

By:

Orlando, Salvatore J.;
Santiago, Yolanda;
DeKelver, Russell C.;
Freyvert, Yevgeniy;
Boydston, Elizabeth A.;
Moehle, Erica A.;
Choi, Vivian M.;
Gopalan, Sunita M.;
Lou, Jacqueline F.;
Li, James;
Miller, Jeffrey C.;
Holmes, Michael C.;
Gregory, Philip D.;
Urnov, Fyodor D.;
Cost, Gregory J.

Publication type:

Article

Two novel families of plasmids from hyperthermophilic archaea encoding new families of replication proteins.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5088, doi. 10.1093/nar/gkq236

By:

Soler, Nicolas;
Marguet, Evelyne;
Cortez, Diego;
Desnoues, Nicole;
Keller, Jenny;
van Tilbeurgh, Herman;
Sezonov, Guennadi;
Forterre, Patrick

Publication type:

Article

GEMIN2 promotes accumulation of RAD51 at double-strand breaks in homologous recombination.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5059, doi. 10.1093/nar/gkq271

By:

Takizawa, Yoshimasa;
Qing, Yong;
Takaku, Motoki;
Ishida, Takako;
Morozumi, Yuichi;
Tsujita, Takashi;
Kogame, Toshiaki;
Hirota, Kouji;
Takahashi, Masayuki;
Shibata, Takehiko;
Kurumizaka, Hitoshi;
Takeda, Shunichi

Publication type:

Article

Nucleic Acids Research.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 15, p. i, doi. 10.1093/nar/gkq289
Publication type:: Article

Knocking down gene function with an RNA aptamer expressed as part of an intron.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e154, doi. 10.1093/nar/gkq529

By:

Wang, Shengchun;
Zhao, Xiaoching;
Suran, Robert;
Vogt, Volker M.;
Lis, John T.;
Shi, Hua

Publication type:

Article

A dumbbell probe-mediated rolling circle amplification strategy for highly sensitive microRNA detection.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e156, doi. 10.1093/nar/gkq556

By:

Zhou, Yuntao;
Huang, Qing;
Gao, Jimin;
Lu, Jianxin;
Shen, Xizhong;
Fan, Chunhai

Publication type:

Article

Regulation of protocadherin gene expression by multiple neuron-restrictive silencer elements scattered in the gene cluster.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4985, doi. 10.1093/nar/gkq246

By:

Tan, Yuen-Peng;
Li, Shaobing;
Jiang, Xiao-Juan;
Loh, Wailin;
Foo, Yik Khon;
Loh, Chay-Boon;
Xu, Qiurong;
Yuen, Wai-Hong;
Jones, Michael;
Fu, Jianlin;
Venkatesh, Byrappa;
Yu, Wei-Ping

Publication type:

Article

Solution structure of the dimerization domain of ribosomal protein P2 provides insights for the structural organization of eukaryotic stalk.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5206, doi. 10.1093/nar/gkq231

By:

Lee, Ka-Ming;
Yu, Conny Wing-Heng;
Chan, Denise So-Bik;
Chiu, Teddy Yu-Hin;
Zhu, Guang;
Sze, Kong-Hung;
Shaw, Pang-Chui;
Wong, Kam-Bo

Publication type:

Article

A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4929, doi. 10.1093/nar/gkq200

By:

Hiura, Hitoshi;
Sugawara, Atsushi;
Ogawa, Hidehiko;
John, Rosalind M.;
Miyauchi, Naoko;
Miyanari, Yusuke;
Horiike, Tokumasa;
Li, Yufeng;
Yaegashi, Nobuo;
Sasaki, Hiroyuki;
Kono, Tomohiro;
Arima, Takahiro

Publication type:

Article

Subscriptions.

Published in:: Nucleic Acids Research, 2010, v. 38, n. 15, p. iii, doi. 10.1093/nar/gkq772
Publication type:: Article

Genome-wide analysis of mRNA abundance in two life-cycle stages of Trypanosoma brucei and identification of splicing and polyadenylation sites.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4946, doi. 10.1093/nar/gkq237

By:

Siegel, Tim Nicolai;
Hekstra, Doeke R.;
Wang, Xuning;
Dewell, Scott;
Cross, George A. M.

Publication type:

Article

PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 4917, doi. 10.1093/nar/gkq255

By:

Sahraeian, Sayed Mohammad Ebrahim;
Yoon, Byung-Jun

Publication type:

Article

Orientation of the central domains of KSRP and its implications for the interaction with the RNA targets.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. 5193, doi. 10.1093/nar/gkq216

By:

Díaz-Moreno, Irene;
Hollingworth, David;
Kelly, Geoff;
Martin, Stephen;
García-Mayoral, MaríaFlor;
Briata, Paola;
Gherzi, Roberto;
Ramos, Andres

Publication type:

Article

Towards computational prediction of microRNA function and activity.

Published in:

Nucleic Acids Research, 2010, v. 38, n. 15, p. e160, doi. 10.1093/nar/gkq570

By:

Ulitsky, Igor;
Laurent, Louise C.;
Shamir, Ron

Publication type:

Article