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JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w510, doi. 10.1093/nar/gkl329
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FISH—family identification of sequence homologues using structure anchored hidden Markov models.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w10, doi. 10.1093/nar/gkl330
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DOUTfinder—identification of distant domain outliers using subsignificant sequence similarity.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w214, doi. 10.1093/nar/gkl332
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RNA helicases and abiotic stress.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3220, doi. 10.1093/nar/gkl408
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Dpb11, the budding yeast homolog of TopBP1, functions with the checkpoint clamp in recombination repair.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3389, doi. 10.1093/nar/gkl411
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Genomic overview of mRNA 5′-leader trans-splicing in the ascidian Ciona intestinalis.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3378, doi. 10.1093/nar/gkl418
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Detecting non-orthology in the COGs database and other approaches grouping orthologs using genome-specific best hits.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3309, doi. 10.1093/nar/gkl433
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Homologous recombination is required for AAV-mediated gene targeting.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3345, doi. 10.1093/nar/gkl455
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Molecular Zipper: a fluorescent probe for real-time isothermal DNA amplification.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl261
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Rapid and sensitive detection of CpG-methylation using methyl-binding (MB)-PCR.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl437
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Information-driven protein–DNA docking using HADDOCK: it is a matter of flexibility.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3317, doi. 10.1093/nar/gkl412
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Phosphoproteomics reveals extensive in vivo phosphorylation of Arabidopsis proteins involved in RNA metabolism.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3267, doi. 10.1093/nar/gkl429
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SAP30L interacts with members of the Sin3A corepressor complex and targets Sin3A to the nucleolus.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3288, doi. 10.1093/nar/gkl401
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Genes invoked in the ovarian transition to menopause.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3279, doi. 10.1093/nar/gkl387
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Short, synthetic and selectively <sup>13</sup>C-labeled RNA sequences for the NMR structure determination of protein–RNA complexes.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl427
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Ultra fast miniaturized real-time PCR: 40 cycles in less than six minutes.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl416
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Methylation enrichment pyrosequencing: combining the specificity of MSP with validation by pyrosequencing.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl424
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Structure of human tryptophanyl-tRNA synthetase in complex with tRNA<sup>Trp</sup> reveals the molecular basis of tRNA recognition and specificity.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3246, doi. 10.1093/nar/gkl441
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Novel oligodeoxynucleotide agonists of TLR9 containing N<sup>3</sup>-Me-dC or N<sup>1</sup>-Me-dG modifications.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3231, doi. 10.1093/nar/gkl430
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Recombination R-triplex: H-bonds contribution to stability as revealed with minor base substitutions for adenine.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3239, doi. 10.1093/nar/gkl431
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ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w440, doi. 10.1093/nar/gkl324
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PAL2NAL: robust conversion of protein sequence alignments into the corresponding codon alignments.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w609, doi. 10.1093/nar/gkl315
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PrrC-anticodon nuclease: functional organization of a prototypical bacterial restriction RNase.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3209, doi. 10.1093/nar/gkl415
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Multiple-turnover thio-ATP hydrolase and phospho-enzyme intermediate formation activities catalyzed by an RNA enzyme.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3201, doi. 10.1093/nar/gkl413
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Primer Extension Enrichment Reaction (PEER): a new subtraction method for identification of genetic differences between biological specimens.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 1, doi. 10.1093/nar/gkl391
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Cytoplasmic expression systems triggered by mRNA yield increased gene expression in post-mitotic neurons.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. e80, doi. 10.1093/nar/gkl442
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Secondary structure effects on DNA hybridization kinetics: a solution versus surface comparison.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3370, doi. 10.1093/nar/gkl422
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Prediction of CsrA-regulating small RNAs in bacteria and their experimental verification in Vibrio fischeri.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3361, doi. 10.1093/nar/gkl439
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A test of the model that RNA polymerase III transcription is regulated by selective induction of the 110 kDa subunit of TFIIIC.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3399, doi. 10.1093/nar/gkl432
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Mutagenic nucleotide incorporation and hindered translocation by a food carcinogen C8-dG adduct in Sulfolobus solfataricus P2 DNA polymerase IV (Dpo4): modeling and dynamics studies.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3326, doi. 10.1093/nar/gkl425
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Metabolic regulation of ApoB mRNA editing is associated with phosphorylation of APOBEC-1 complementation factor.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3299, doi. 10.1093/nar/gkl417
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Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson–Crick terminal base pairs.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3338, doi. 10.1093/nar/gkl428
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Promiscuous mismatch extension by human DNA polymerase lambda.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. 3259, doi. 10.1093/nar/gkl377
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EDITORIAL.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w1, doi. 10.1093/nar/gkl385
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A compilation of molecular biology web servers: 2006 update on the Bioinformatics Links Directory.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w3, doi. 10.1093/nar/gkl379
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Localizome: a server for identifying transmembrane topologies and TM helices of eukaryotic proteins utilizing domain information.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w99, doi. 10.1093/nar/gkl351
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Protemot: prediction of protein binding sites with automatically extracted geometrical templates.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w303, doi. 10.1093/nar/gkl344
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AlgPred: prediction of allergenic proteins and mapping of IgE epitopes.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w202, doi. 10.1093/nar/gkl343
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Composite Module Analyst: identification of transcription factor binding site combinations using genetic algorithm.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w541, doi. 10.1093/nar/gkl342
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PREDITOR: a web server for predicting protein torsion angle restraints.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w63, doi. 10.1093/nar/gkl341
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TOM: a web-based integrated approach for identification of candidate disease genes.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w285, doi. 10.1093/nar/gkl340
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FeatureScan: revealing property-dependent similarity of nucleotide sequences.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w591, doi. 10.1093/nar/gkl337
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RegRNA: an integrated web server for identifying regulatory RNA motifs and elements.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w429, doi. 10.1093/nar/gkl333
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TICO: a tool for postprocessing the predictions of prokaryotic translation initiation sites.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w588, doi. 10.1093/nar/gkl313
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KemaDom: a web server for domain prediction using kernel machine with local context.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w158, doi. 10.1093/nar/gkl331
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ProMiR II: a web server for the probabilistic prediction of clustered, nonclustered, conserved and nonconserved microRNAs.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w455, doi. 10.1093/nar/gkl321
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Taverna: a tool for building and running workflows of services.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w729, doi. 10.1093/nar/gkl320
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HARMONY: a server for the assessment of protein structures.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w231, doi. 10.1093/nar/gkl314
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SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w642, doi. 10.1093/nar/gkl323
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CEAS: cis-regulatory element annotation system.
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- Nucleic Acids Research, 2006, v. 34, n. 11, p. w551
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