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Cell-type-specific transcriptomics in chimeric models using transcriptome-based masks.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e111, doi. 10.1093/nar/gni104
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Large-scale structural analysis of the core promoter in mammalian and plant genomes.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4255, doi. 10.1093/nar/gki737
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Solution structure of the DNA-binding domain of RPA from Saccharomyces cerevisiae and its interaction with single-stranded DNA and SV40 T antigen.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4172, doi. 10.1093/nar/gki736
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Preferential binding of a G-quadruplex ligand to human chromosome ends.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4182, doi. 10.1093/nar/gki722
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Evaluation of multiple displacement amplification in a 5 cM STR genome-wide scan.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e119, doi. 10.1093/nar/gni126
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An ultrasensitive photoelectrochemical nucleic acid biosensor.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e123, doi. 10.1093/nar/gni125
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SiteFinding-PCR: a simple and efficient PCR method for chromosome walking.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e122, doi. 10.1093/nar/gni124
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Simultaneous detection of microsatellite repeats and SNPs in the macrophage migration inhibitory factor (MIF) gene by thin-film biosensor chips and application to rural field studies.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e121, doi. 10.1093/nar/gni123
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Characterization of zebrafish Rad52 and replication protein A for oligonucleotide-mediated mutagenesis.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e120, doi. 10.1093/nar/gni122
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Minimal cross-recombination between wild-type and loxP511 sites in vivo facilitates truncating both ends of large DNA inserts in pBACe3.6 and related vectors.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e118, doi. 10.1093/nar/gni119
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I-ApeI: a novel intron-encoded LAGLIDADG homing endonuclease from the archaeon, Aeropyrum pernix K1.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e116, doi. 10.1093/nar/gni118
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- Article
Nucleotide exchange and excision technology (NExT) DNA shuffling: a robust method for DNA fragmentation and directed evolution.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e117, doi. 10.1093/nar/gni116
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A novel PCR strategy for high-efficiency, automated site-directed mutagenesis.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e110, doi. 10.1093/nar/gni115
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Four new type I restriction enzymes identified in Escherichia coli clinical isolates.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e114, doi. 10.1093/nar/gni114
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Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5′-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e112, doi. 10.1093/nar/gni113
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Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e113, doi. 10.1093/nar/gni112
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Genome-wide selection of unique and valid oligonucleotides.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. e115, doi. 10.1093/nar/gni110
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Topological constraints in nucleic acid hybridization kinetics.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4090, doi. 10.1093/nar/gki721
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Human POL II promoter prediction: time series descriptors and machine learning.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4378, doi. 10.1093/nar/gki753
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The 5S rRNA maturase, ribonuclease M5, is a Toprim domain family member.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4368, doi. 10.1093/nar/gki752
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An Oct-1 binding site mediates activation of the gata2 promoter by BMP signaling.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4357, doi. 10.1093/nar/gki746
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The proliferating cell nuclear antigen regulates retinoic acid receptor transcriptional activity through direct protein–protein interaction.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4311, doi. 10.1093/nar/gki745
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Anti-HIV-1 activity of anti-TAR polyamide nucleic acid conjugated with various membrane transducing peptides.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4345, doi. 10.1093/nar/gki743
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Assigning functions to genes: identification of S-phase expressed genes in Leishmania major based on post-transcriptional control elements.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4235, doi. 10.1093/nar/gki742
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CisMols Analyzer: identification of compositionally similar cis-element clusters in ortholog conserved regions of coordinately expressed genes.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4377, doi. 10.1093/nar/gki740
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miBLAST: scalable evaluation of a batch of nucleotide sequence queries with BLAST.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4335, doi. 10.1093/nar/gki739
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FAST DB: a website resource for the study of the expression regulation of human gene products.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4276, doi. 10.1093/nar/gki738
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An atypical RNA pseudoknot stimulator and an upstream attenuation signal for −1 ribosomal frameshifting of SARS coronavirus.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4265
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Incorporation of non-nucleoside triphosphate analogues opposite to an abasic site by human DNA polymerases β and λ.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4117, doi. 10.1093/nar/gki723
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MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4164, doi. 10.1093/nar/gki735
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GDNF-inducible zinc finger protein 1 is a sequence-specific transcriptional repressor that binds to the HOXA10 gene regulatory region.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4191, doi. 10.1093/nar/gki734
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Induction of transcription within chromosomal DNA loops flanked by MAR elements causes an association of loop DNA with the nuclear matrix.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4157, doi. 10.1093/nar/gki733
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Functional polarity is introduced by Dicer processing of short substrate RNAs.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4140, doi. 10.1093/nar/gki732
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Specific binding of the methyl binding domain protein 2 at the BRCA1-NBR2 locus.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4243, doi. 10.1093/nar/gki729
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Contrasting effects of Elg1–RFC and Ctf18–RFC inactivation in the absence of fully functional RFC in fission yeast.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4078, doi. 10.1093/nar/gki728
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Cloning and characterization of the Schizosaccharomyces pombe homologs of the human protein Translin and the Translin-associated protein TRAX.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4128, doi. 10.1093/nar/gki727
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Intercalator conjugates of pyrimidine locked nucleic acid-modified triplex-forming oligonucleotides: improving DNA binding properties and reaching cellular activities.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4223, doi. 10.1093/nar/gki726
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Structural and DNA-binding studies on the bovine antimicrobial peptide, indolicidin: evidence for multiple conformations involved in binding to membranes and DNA.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4053, doi. 10.1093/nar/gki725
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Cooperative binding of DNA and CBFβ to the Runt domain of the CBFα studied via MD simulations.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4212, doi. 10.1093/nar/gki724
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Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4040, doi. 10.1093/nar/gki718
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Length-dependent energetics of (CTG)<sub>n</sub> and (CAG)<sub>n</sub> trinucleotide repeats.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4065, doi. 10.1093/nar/gki716
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Transcription factor binding sites in the pol gene intragenic regulatory region of HIV-1 are important for virus infectivity.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4285, doi. 10.1093/nar/gki720
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A host–guest approach for determining drug–DNA interactions: an example using netropsin.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4106, doi. 10.1093/nar/gki717
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sRNAPredict: an integrative computational approach to identify sRNAs in bacterial genomes.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4096, doi. 10.1093/nar/gki715
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Uracil content of 16S rRNA of thermophilic and psychrophilic prokaryotes correlates inversely with their optimal growth temperatures.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4016, doi. 10.1093/nar/gki714
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Genome annotation errors in pathway databases due to semantic ambiguity in partial EC numbers.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4035, doi. 10.1093/nar/gki711
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Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 3994, doi. 10.1093/nar/gki709
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Functional studies on the ATM intronic splicing processing element.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4007, doi. 10.1093/nar/gki710
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Determination of protein–DNA binding constants and specificities from statistical analyses of single molecules: MutS–DNA interactions.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 4322, doi. 10.1093/nar/gki708
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Maternal disruption of Ube3a leads to increased expression of Ube3a-ATS in trans.
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- Nucleic Acids Research, 2005, v. 33, n. 13, p. 3976, doi. 10.1093/nar/gki705
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