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RECON: a program for prediction of nucleosome formation potential.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w346, doi. 10.1093/nar/gkh482
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EDITORIAL.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w1, doi. 10.1093/nar/gkh487
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Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w365, doi. 10.1093/nar/gkh485
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Dragon TF Association Miner: a system for exploring transcription factor associations through text-mining.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w230, doi. 10.1093/nar/gkh484
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SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w235
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ArrayXPath: mapping and visualizing microarray gene-expression data with integrated biological pathway resources using Scalable Vector Graphics.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w460, doi. 10.1093/nar/gkh476
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CSTminer: a web tool for the identification of coding and noncoding conserved sequence tags through cross-species genome comparison.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w624, doi. 10.1093/nar/gkh486
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JavaProtein Dossier: a novel web-based data visualization tool for comprehensive analysis of protein structure.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w595, doi. 10.1093/nar/gkh480
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SITECON: a tool for detecting conservative conformational and physicochemical properties in transcription factor binding site alignments and for site recognition.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w208, doi. 10.1093/nar/gkh474
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e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w301, doi. 10.1093/nar/gkh478
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SuperPose: a simple server for sophisticated structural superposition.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w590, doi. 10.1093/nar/gkh477
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CHOP: parsing proteins into structural domains.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w569, doi. 10.1093/nar/gkh481
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CysView: protein classification based on cysteine pairing patterns.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w350, doi. 10.1093/nar/gkh475
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MyHits: a new interactive resource for protein annotation and domain identification.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w332, doi. 10.1093/nar/gkh479
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KCaM (KEGG Carbohydrate Matcher): a software tool for analyzing the structures of carbohydrate sugar chains.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w267, doi. 10.1093/nar/gkh473
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SA-Search: a web tool for protein structure mining based on a Structural Alphabet.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w545, doi. 10.1093/nar/gkh467
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ADVICE: Automated Detection and Validation of Interaction by Co-Evolution.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w69, doi. 10.1093/nar/gkh471
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Expression Profiler: next generation—an online platform for analysis of microarray data.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w465, doi. 10.1093/nar/gkh470
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MAVL and StickWRLD: visually exploring relationships in nucleic acid sequence alignments.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w59, doi. 10.1093/nar/gkh469
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Protein structure prediction and analysis using the Robetta server.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w526, doi. 10.1093/nar/gkh468
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PepBuild: a web server for building structure data of peptides/proteins.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w559, doi. 10.1093/nar/gkh472
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Complexity: an internet resource for analysis of DNA sequence complexity.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w628, doi. 10.1093/nar/gkh466
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ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w414, doi. 10.1093/nar/gkh350
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BOMP: a program to predict integral β-barrel outer membrane proteins encoded within genomes of Gram-negative bacteria.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w394, doi. 10.1093/nar/gkh351
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Riboswitch finder—a tool for identification of riboswitch RNAs.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w154, doi. 10.1093/nar/gkh352
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CONFAC: automated application of comparative genomic promoter analysis to DNA microarray datasets.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w475, doi. 10.1093/nar/gkh353
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ClusPro: a fully automated algorithm for protein–protein docking.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w96, doi. 10.1093/nar/gkh354
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ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w280, doi. 10.1093/nar/gkh355
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ProMoST (Protein Modification Screening Tool): a web-based tool for mapping protein modifications on two-dimensional gels.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w638, doi. 10.1093/nar/gkh356
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CVTree: a phylogenetic tree reconstruction tool based on whole genomes.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w45, doi. 10.1093/nar/gkh362
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WAViS server for handling, visualization and presentation of multiple alignments of nucleotide or amino acids sequences.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w48, doi. 10.1093/nar/gkh358
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NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w405, doi. 10.1093/nar/gkh359
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The CHAOS/DIALIGN WWW server for multiple alignment of genomic sequences.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w41, doi. 10.1093/nar/gkh361
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TROD: T7 RNAi Oligo Designer.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w121, doi. 10.1093/nar/gkh360
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Wurst: a protein threading server with a structural scoring function, sequence profiles and optimized substitution matrices.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w532, doi. 10.1093/nar/gkh357
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Qgrid: clustering tool for detecting charged and hydrophobic regions in proteins.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w104, doi. 10.1093/nar/gkh363
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PredictRegulon: a web server for the prediction of the regulatory protein binding sites and operons in prokaryote genomes.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w318, doi. 10.1093/nar/gkh364
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Phydbac2: improved inference of gene function using interactive phylogenomic profiling and chromosomal location analysis.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w336, doi. 10.1093/nar/gkh365
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siRNA Selection Server: an automated siRNA oligonucleotide prediction server.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w130, doi. 10.1093/nar/gkh366
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CREME: Cis-Regulatory Module Explorer for the human genome.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w253, doi. 10.1093/nar/gkh385
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SNPbox: web-based high-throughput primer design from gene to genome.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w170, doi. 10.1093/nar/gkh369
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DIALIGN: multiple DNA and protein sequence alignment at BiBiServ.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w33, doi. 10.1093/nar/gkh373
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PDB2PQR: an automated pipeline for the setup of Poisson–Boltzmann electrostatics calculations.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w665, doi. 10.1093/nar/gkh381
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The web server of IBM's Bioinformatics and Pattern Discovery group: 2004 update.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w10, doi. 10.1093/nar/gkh367
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MITOPRED: a web server for the prediction of mitochondrial proteins.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w372, doi. 10.1093/nar/gkh374
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ElNémo: a normal mode web server for protein movement analysis and the generation of templates for molecular replacement.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w610, doi. 10.1093/nar/gkh368
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3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w37, doi. 10.1093/nar/gkh382
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Detecting distant homology with Meta-BASIC.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w576, doi. 10.1093/nar/gkh370
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DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w668, doi. 10.1093/nar/gkh371
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ConSite: web-based prediction of regulatory elements using cross-species comparison.
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- Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w249, doi. 10.1093/nar/gkh372
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