Works matching IS 02197200 AND DT 2011 AND VI 9

Results: 56

FOLDING ELASTIC TRANSMEMBRANE HELICES TO FIT IN A LOW-RESOLUTION IMAGE BY ELECTRON MICROSCOPY.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 37, doi. 10.1142/S0219720011005720

By:

UENO, YUTAKA;
KAWASAKI, KAZUNORI;
SAITO, OSAMU;
ARAI, MASAFUMI;
SUWA, MAKIKO

Publication type:

Article

DISCOVERY AND EVALUATION OF POTENTIAL SONIC HEDGEHOG SIGNALING PATHWAY INHIBITORS USING PHARMACOPHORE MODELING AND MOLECULAR DYNAMICS SIMULATIONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 15, doi. 10.1142/S0219720011005732

By:

HWANG, SWAN;
THANGAPANDIAN, SUNDARAPANDIAN;
LEE, YUNO;
SAKKIAH, SUGUNADEVI;
JOHN, SHALINI;
LEE, KEUN WOO

Publication type:

Article

A TRANSCRIPTOME ANALYSIS BY LASSO PENALIZED COX REGRESSION FOR PANCREATIC CANCER SURVIVAL.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 63, doi. 10.1142/S0219720011005744

By:

WU, TONG TONG;
GONG, HAIJUN;
CLARKE, EDMUND M.

Publication type:

Article

SRMBUILDER:: A USER-FRIENDLY TOOL FOR SELECTED REACTION MONITORING DATA ANALYSIS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 51, doi. 10.1142/S0219720011005756

By:

SHENG, QUANHU;
WU, CHAOCHAO;
SU, ZHIDUAN;
ZENG, RONG

Publication type:

Article

INFERENCE OF S-SYSTEM MODELS OF GENE REGULATORY NETWORKS USING IMMUNE ALGORITHM.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 75, doi. 10.1142/S0219720011005768

By:

NAKAYAMA, TOMOYOSHI;
SENO, SHIGETO;
TAKENAKA, YOICHI;
MATSUDA, HIDEO

Publication type:

Article

CSCORE:: A SIMPLE YET EFFECTIVE SCORING FUNCTION FOR PROTEIN-LIGAND BINDING AFFINITY PREDICTION USING MODIFIED CMAC LEARNING ARCHITECTURE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 1, doi. 10.1142/S021972001100577X

By:

OUYANG, XUCHANG;
HANDOKO, STEPHANUS DANIEL;
KWOH, CHEE KEONG

Publication type:

Article

COMPARISON OF TWO ACADEMIC SOFTWARE PACKAGES FOR ANALYZING TWO-DIMENSIONAL GEL IMAGES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 775, doi. 10.1142/S0219720011005665

By:

WU, YUKUN;
ZHANG, LE

Publication type:

Article

JAGUC - A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 749, doi. 10.1142/S0219720011005781

By:

NEBEL, MARKUS E.;
WILD, SEBASTIAN;
HOLZHAUSER, MICHAEL;
HÜTTENBERGER, LARS;
REITZIG, RAPHAEL;
SPERBER, MATTHIAS;
STOECK, THORSTEN

Publication type:

Article

INTRODUCTION - Progresses in Genome Informatics.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. v, doi. 10.1142/S0219720011005823

By:

CHU, IN-SUN;
GOTOH, OSAMU;
LEE, INSUK

Publication type:

Article

A NEW GENOTYPE CALLING METHOD FOR AFFYMETRIX SNP ARRAYS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 715, doi. 10.1142/S0219720011005458

By:

FU, BILIN;
XU, JIN

Publication type:

Article

VERIFICATION OF PHYLOGENETIC INFERENCE PROGRAMS USING METAMORPHIC TESTING.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 729, doi. 10.1142/S021972001100563X

By:

SADI, MD. SHAIK;
KUO, FEI-CHING;
HO, JOSHUA W. K.;
CHARLESTON, MICHAEL A.;
CHEN, T. Y.

Publication type:

Article

USING BINDING PROFILES TO PREDICT BINDING SITES OF TARGET RNAs.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 697, doi. 10.1142/S0219720011005628

By:

POOLSAP, UNYANEE;
KATO, YUKI;
SATO, KENGO;
AKUTSU, TATSUYA

Publication type:

Article

SEQUENTIAL LINEAR NEIGHBORHOOD PROPAGATION FOR SEMI-SUPERVISED PROTEIN FUNCTION PREDICTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 663, doi. 10.1142/S0219720011005550

By:

WANG, JINGYAN;
LI, YONGPING

Publication type:

Article

A GRAPH-BASED SEMANTIC SIMILARITY MEASURE FOR THE GENE ONTOLOGY.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 681, doi. 10.1142/S0219720011005641

By:

ALVAREZ, MARCO A.;
YAN, CHANGHUI

Publication type:

Article

HOW TO CHOOSE A NORMALIZATION STRATEGY FOR MIRNA QUANTITATIVE REAL-TIME (QPCR) ARRAYS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 795, doi. 10.1142/S0219720011005793

By:

DEO, AMEYA;
CARLSSON, JESSICA;
LINDLÖF, ANGELICA

Publication type:

Article

INTRODUCTION - Some New Results and Tools for Protein Function Prediction, RNA Target Site Prediction, Genotype Calling, Environmental Genomics, and More.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. v, doi. 10.1142/S021972001100580X

By:

Wong, Limsoon

Publication type:

Article

AUTHOR INDEX Volume 9 (2011).

Published in:: Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 6, p. 813, doi. 10.1142/S0219720011005811
Publication type:: Article

SEQUENCE-BASED ENZYME CATALYTIC DOMAIN PREDICTION USING CLUSTERING AND AGGREGATED MUTUAL INFORMATION CONTENT.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 597, doi. 10.1142/S0219720011005677

By:

CHOI, KWANGMIN;
KIM, SUN

Publication type:

Article

A COMPRESSED SENSING BASED APPROACH FOR SUBTYPING OF LEUKEMIA FROM GENE EXPRESSION DATA.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 631, doi. 10.1142/S0219720011005689

By:

TANG, WENLONG;
CAO, HONGBAO;
DUAN, JUNBO;
WANG, YU-PING

Publication type:

Article

QUANTITATIVE MODELING OF THE SACCHAROMYCES CEREVISIAE FLR1 REGULATORY NETWORK USING AN S-SYSTEM FORMALISM.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 613, doi. 10.1142/S0219720011005690

By:

CALÇADA, DULCE;
VINGA, SUSANA;
FREITAS, ANA T.;
OLIVEIRA, ARLINDO L.

Publication type:

Article

A SYSTEMS BIOLOGY APPROACH FOR DETECTING TOXICITY-RELATED HOTSPOTS INSIDE PROTEIN INTERACTION NETWORKS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 647, doi. 10.1142/S0219720011005707

By:

DESAI, KAUSHAL;
BROTT, DAVID;
HU, XIAOHUA;
CHRISTIANSON, ANASTASIA

Publication type:

Article

INTRODUCTION - The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. v, doi. 10.1142/S0219720011005719

By:

Chen, Xue-Wen;
Miyano, Satoru

Publication type:

Article

PATTERNS OF HYDROPHOBICITY FOUND IN THE FIRST AND SECOND TRANSMEMBRANE DOMAINS OF SOLUTE TRANSPORTERS SUGGEST A POSSIBLE ROLE IN NASCENT PROTEIN ANCHORING AND ORGANIZATION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 471, doi. 10.1142/S0219720011005367

By:

HODGKINSON, STEVE;
KASCHKA, WOLFGANG P.

Publication type:

Article

COMPUTATIONAL CHALLENGES OF TUMOR SPHEROID MODELING.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 559, doi. 10.1142/S0219720011005379

By:

CHIGNOLA, ROBERTO;
FABBRO, ALESSIO DEL;
FARINA, MARCELLO;
MILOTTI, EDOARDO

Publication type:

Article

A METHODOLOGY BASED ON MOLECULAR INTERACTIONS AND PATHWAYS TO FIND CANDIDATE GENES ASSOCIATED TO DISEASES:: ITS APPLICATION TO SCHIZOPHRENIA AND ALZHEIMER'S DISEASE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 541

By:

OCHAGAVÍA, MARÍA ELENA;
MIRANDA, JAMILET;
NAZÁBAL, MARCELO;
MARTIN, ALEXANDER;
NOVOA, LIDIA INÉS;
BRINGAS, RICARDO;
FERNÁNDEZ-DE-COSSÍO, JORGE;
CAMACHO, HANLET

Publication type:

Article

ASSOCIATION OF FEATURE GENE EXPRESSION WITH STRUCTURAL FINGERPRINTS OF CHEMICAL COMPOUNDS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 503, doi. 10.1142/S0219720011005446

By:

LI, YUN;
TU, KANG;
ZHENG, SIYUAN;
WANG, JINGFANG;
LI, YIXUE;
HAO, PEI;
LI, XUAN

Publication type:

Article

IDENTIFYING AND RECONSTRUCTING LATERAL TRANSFERS FROM DISTANCE MATRICES BY COMBINING THE MINIMUM CONTRADICTION METHOD AND NEIGHBOR-NET.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 453, doi. 10.1142/S0219720011005409

By:

THUILLARD, MARC;
MOULTON, VINCENT

Publication type:

Article

SVM-BASED METHOD FOR PROTEIN STRUCTURAL CLASS PREDICTION USING SECONDARY STRUCTURAL CONTENT AND STRUCTURAL INFORMATION OF AMINO ACIDS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 489, doi. 10.1142/S0219720011005422

By:

MOHAMMAD, TABREZ ANWAR SHAMIM;
NAGARAJARAM, HAMPAPATHALU ADIMURTHY

Publication type:

Article

VISUALIZATION IN SIMULATION TOOLS:: REQUIREMENTS AND A TOOL SPECIFICATION TO SUPPORT THE TEACHING OF DYNAMIC BIOLOGICAL PROCESSES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 579

By:

JØRGENSEN, KATARINA M.;
HADDOW, PAULINE C.

Publication type:

Article

TRANSFER LEARNING FOR CYTOCHROME P450 ISOZYME SELECTIVITY PREDICTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 521, doi. 10.1142/S0219720011005434

By:

TERAMOTO, REIJI;
KATO, TSUYOSHI

Publication type:

Article

BRIEF INTRODUCTION TO SOME NEW PAPERS ON LATERAL TRANSFER RECONSTRUCTION, DRUG CANDIDATE SCREENING, DISEASE GENE IDENTIFICATION, AND OTHER RESULTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. v, doi. 10.1142/S0219720011005653

By:

Wong, Limsoon

Publication type:

Article

OPTIMAL PAIRWISE ALIGNMENT OF FIXED PROTEIN STRUCTURES IN SUBQUADRATIC TIME.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. 367, doi. 10.1142/S0219720011005562

By:

POLEKSIC, ALEKSANDAR

Publication type:

Article

IN SEARCH OF THE PROTEIN NATIVE STATE WITH A PROBABILISTIC SAMPLING APPROACH.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. 383, doi. 10.1142/S0219720011005574

By:

OLSON, BRIAN;
MOLLOY, KEVIN;
SHEHU, AMARDA

Publication type:

Article

A TWO-STAGE EVOLUTIONARY APPROACH FOR EFFECTIVE CLASSIFICATION OF HYPERSENSITIVE DNA SEQUENCES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. 399, doi. 10.1142/S0219720011005586

By:

KAMATH, UDAY;
SHEHU, AMARDA;
DE JONG, KENNETH A.

Publication type:

Article

A METHOD FOR THE DETECTION OF MEANINGFUL AND REPRODUCIBLE GROUP SIGNATURES FROM GENE EXPRESSION PROFILES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. 431, doi. 10.1142/S0219720011005598

By:

LICAMELE, LOUIS;
GETOOR, LISE

Publication type:

Article

RANKING VALID TOPOLOGIES OF THE SECONDARY STRUCTURE ELEMENTS USING A CONSTRAINT GRAPH.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. 415, doi. 10.1142/S0219720011005604

By:

AL NASR, KAMAL;
RANJAN, DESH;
ZUBAIR, MOHAMMAD;
HE, JING

Publication type:

Article

ncRNA CONSENSUS SECONDARY STRUCTURE DERIVATION USING GRAMMAR STRINGS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 317, doi. 10.1142/S0219720011005501

By:

ACHAWANANTAKUN, RUJIRA;
SUN, YANNI;
TAKYAR, SEYEDEH SHOHREH

Publication type:

Article

THE 5TH INTERNATIONAL CONFERENCE ON BIO-INSPIRED MODELS OF NETWORK, INFORMATION AND COMPUTING SYSTEMS (BIONETICS 2010) SPECIAL TRACK ON BIOINFORMATICS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 3, p. v, doi. 10.1142/S0219720011005616

By:

HASPEL, NURIT;
SHEHU, AMARDA

Publication type:

Article

OPTIMIZATION OF THERAPEUTIC PROTEINS TO DELETE T-CELL EPITOPES WHILE MAINTAINING BENEFICIAL RESIDUE INTERACTIONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 207, doi. 10.1142/S0219720011005471

By:

PARKER, ANDREW S.;
GRISWOLD, KARL E.;
BAILEY-KELLOGG, CHRIS

Publication type:

Article

COMPARING MULTIPLE ChIP-SEQUENCING EXPERIMENTS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 269, doi. 10.1142/S0219720011005483

By:

OZER, HATICE GULCIN;
HUANG, YI-WEN;
WU, JIEJUN;
PARVIN, JEFFREY D.;
HUANG, TIM HUI-MING;
HUANG, KUN

Publication type:

Article

ANALYZING MODULAR RNA STRUCTURE REVEALS LOW GLOBAL STRUCTURAL ENTROPY IN MICRORNA SEQUENCE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 283, doi. 10.1142/S0219720011005495

By:

SHAW, TIMOTHY I.;
MANZOUR, AMIR;
WANG, YINGFENG;
MALMBERG, RUSSELL L.;
CAI, LIMING

Publication type:

Article

LEX-SVM:: EXPLORING THE POTENTIAL OF EXON EXPRESSION PROFILING FOR DISEASE CLASSIFICATION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 299, doi. 10.1142/S0219720011005513

By:

YUAN, XIONGYING;
ZHAO, YI;
LIU, CHANGNING;
BU, DONGBO

Publication type:

Article

CLASSIFICATION OF LARGE MICROARRAY DATASETS USING FAST RANDOM FOREST CONSTRUCTION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 251, doi. 10.1142/S021972001100546X

By:

MANILICH, ELENA A.;
ÖZSOYOǦLU, Z. MERAL;
TRUBACHEV, VALERIY;
RADIVOYEVITCH, TOMAS

Publication type:

Article

TEMPORAL GRAPHICAL MODELS FOR CROSS-SPECIES GENE REGULATORY NETWORK DISCOVERY.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 231, doi. 10.1142/S0219720011005525

By:

LIU, YAN;
NICULESCU-MIZIL, ALEXANDRU;
LOZANO, AURÉLIE;
LU, YONG

Publication type:

Article

INTRODUCTION:: ADVANCES IN COMPUTATIONAL SYSTEMS BIOINFORMATICS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. v, doi. 10.1142/S0219720011005537

By:

WITTKOP, TOBIAS;
MOONEY, SEAN D.

Publication type:

Article

PREDICTION OF THE EXPOSURE STATUS OF TRANSMEMBRANE BETA BARREL RESIDUES FROM PROTEIN SEQUENCE.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 43, doi. 10.1142/S0219720011005240

By:

HAYAT, SIKANDER;
WALTER, PETER;
PARK, YUNGKI;
HELMS, VOLKHARD

Publication type:

Article

THE JANUS-FACED E-VALUES OF HMMER2:: EXTREME VALUE DISTRIBUTION OR LOGISTIC FUNCTION?

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 179, doi. 10.1142/S0219720011005264

By:

WONG, WING-CHEONG;
MAURER-STROH, SEBASTIAN;
EISENHABER, FRANK

Publication type:

Article

A NOVEL APPROACH TO DNA COPY NUMBER DATA SEGMENTATION.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 131, doi. 10.1142/S0219720011005343

By:

WANG, SILING;
WANG, YUHANG;
XIE, YANG;
XIAO, GUANGHUA

Publication type:

Article

IMPROVED SEQUENCE-BASED PREDICTION OF STRAND RESIDUES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 1, p. 67, doi. 10.1142/S0219720011005355

By:

KEDARISETTI, KANAKA DURGA;
MIZIANTY, MARCIN J.;
DICK, SCOTT;
KURGAN, LUKASZ

Publication type:

Article

INFERRING HAPLOTYPES FROM GENOTYPES ON A PEDIGREE WITH MUTATIONS, GENOTYPING ERRORS AND MISSING ALLELES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. 339, doi. 10.1142/S0219720011005549

By:

WANG, WEI-BUNG;
JIANG, TAO

Publication type:

Article