Works matching IS 00778923 AND DT 2009 AND VI 1158

Results: 27

Ranking Genes by Their Co-expression to Subsets of Pathway Members.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 1, doi. 10.1111/j.1749-6632.2008.03747.x

By:

Adler, Priit;
Peterson, Hedi;
Agius, Phaedra;
Reimand, Jüri;
Vilo, Jaak

Publication type:

Article

Uncovering Metabolic Objectives Pursued by Changes of Enzyme Levels.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 57, doi. 10.1111/j.1749-6632.2008.03753.x

By:

Hoffmann, Sabrina;
Holzhütter, Hermann‐Georg

Publication type:

Article

The Condition-Dependent Transcriptional Network in Escherichia coli.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 29, doi. 10.1111/j.1749-6632.2008.03746.x

By:

Lemmens, Karen;
De Bie, Tijl;
Dhollander, Thomas;
Monsieurs, Pieter;
De Moor, Bart;
Collado‐Vides, Julio;
Engelen, Kristof;
Marchal, Kathleen

Publication type:

Article

Modeling of Gene Regulatory Network Dynamics Using Threshold Logic.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 71, doi. 10.1111/j.1749-6632.2008.03754.x

By:

Gowda, Tejaswi;
Vrudhula, Sarma;
Kim, Seungchan

Publication type:

Article

Reverse-Engineering Transcriptional Modules from Gene Expression Data.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 36, doi. 10.1111/j.1749-6632.2008.03943.x

By:

Michoel, Tom;
De Smet, Riet;
Joshi, Anagha;
Marchal, Kathleen;
Van de Peer, Yves

Publication type:

Article

DREAM2 Challenge.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 196, doi. 10.1111/j.1749-6632.2008.03755.x

By:

Lee, W.H.;
Narang, V.;
Xu, H.;
Lin, F.;
Chin, K.C.;
Sung, W.K.

Publication type:

Article

Inference of Regulatory Gene Interactions from Expression Data Using Three-Way Mutual Information.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 302, doi. 10.1111/j.1749-6632.2008.03757.x

By:

Watkinson, John;
Liang, Kuo‐ching;
Wang, Xiadong;
Zheng, Tian;
Anastassiou, Dimitris

Publication type:

Article

Specification of Spatial Relationships in Directed Graphs of Cell Signaling Networks.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 44, doi. 10.1111/j.1749-6632.2008.03748.x

By:

Lipshtat, Azi;
Neves, Susana R.;
Iyengar, Ravi

Publication type:

Article

The Five-Gene-Network Data Analysis with Local Causal Discovery Algorithm Using Causal Bayesian Networks.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 93, doi. 10.1111/j.1749-6632.2008.03749.x

By:

Yoo, Changwon;
Brilz, Erik M.

Publication type:

Article

Creating Reference Datasets for Systems Biology Applications Using Text Mining.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 14, doi. 10.1111/j.1749-6632.2008.03750.x

By:

Krallinger, Martin;
Rojas, Ana María;
Valencia, Alfonso

Publication type:

Article

Network Inference by Combining Biologically Motivated Regulatory Constraints with Penalized Regression.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 114, doi. 10.1111/j.1749-6632.2008.03751.x

By:

Parisi, Fabio;
Koeppl, Heinz;
Naef, Felix

Publication type:

Article

Global Robustness and Identifiability of Random, Scale-Free, and Small-World Networks.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 82, doi. 10.1111/j.1749-6632.2008.03752.x

By:

Gong, Yunchen;
Zhang, Zhaolei

Publication type:

Article

Prediction of Pairwise Gene Interaction Using Threshold Logic.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 276, doi. 10.1111/j.1749-6632.2008.03763.x

By:

Gowda, Tejaswi;
Vrudhula, Sarma;
Kim, Seungchan

Publication type:

Article

A Data Integration Framework for Prediction of Transcription Factor Targets.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 205, doi. 10.1111/j.1749-6632.2008.03758.x

By:

Nykter, Matti;
Lähdesmäki, Harri;
Rust, Alistair;
Thorsson, Vesteinn;
Shmulevich, Ilya

Publication type:

Article

A Gene Network Simulator to Assess Reverse Engineering Algorithms.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 125, doi. 10.1111/j.1749-6632.2008.03756.x

By:

Di Camillo, Barbara;
Toffolo, Gianna;
Cobelli, Claudio

Publication type:

Article

A Probabilistic Graph-Theoretic Approach to Integrate Multiple Predictions for the Protein–Protein Subnetwork Prediction Challenge.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 224, doi. 10.1111/j.1749-6632.2008.03760.x

By:

Chua, Hon Nian;
Hugo, Willy;
Liu, Guimei;
Li, Xiaoli;
Wong, Limsoon;
Ng, See‐Kiong

Publication type:

Article

NIRest: A Tool for Gene Network and Mode of Action Inference.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 257, doi. 10.1111/j.1749-6632.2008.03761.x

By:

Lauria, Mario;
Iorio, Francesco;
Di Bernardo, Diego

Publication type:

Article

A Network Inference Workflow Applied to Virulence-Related Processes in Salmonella typhimurium.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 143, doi. 10.1111/j.1749-6632.2008.03762.x

By:

Taylor, Ronald C.;
Singhal, Mudita;
Weller, Jennifer;
Khoshnevis, Saeed;
Shi, Liang;
McDermott, Jason

Publication type:

Article

Inferring Direct Regulatory Targets of a Transcription Factor in the DREAM2 Challenge.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 215, doi. 10.1111/j.1749-6632.2008.03759.x

By:

Vega, Vinsensius B.;
Woo, Xing Yi;
Hamidi, Habib;
Yeo, Hock Chuan;
Yeo, Zhen Xuan;
Bourque, Guillaume;
Clarke, Neil D.

Publication type:

Article

Lessons from the DREAM2 Challenges.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 159, doi. 10.1111/j.1749-6632.2009.04497.x

By:

Stolovitzky, Gustavo;
Prill, Robert J.;
Califano, Andrea

Publication type:

Article

Combining Multiple Results of a Reverse-Engineering Algorithm: Application to the DREAM Five-Gene Network Challenge.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 102, doi. 10.1111/j.1749-6632.2008.03945.x

By:

Marbach, Daniel;
Mattiussi, Claudio;
Floreano, Dario

Publication type:

Article

Inferring Gene Networks: Dream or Nightmare?

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 246, doi. 10.1111/j.1749-6632.2008.04099.x

By:

Baralla, Angela;
Mentzen, Wieslawa I.;
De La Fuente, Alberto

Publication type:

Article

Inferring Gene Networks: Dream or Nightmare?

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 287, doi. 10.1111/j.1749-6632.2008.04100.x

By:

Scheinine, Alan;
Mentzen, Wieslawa I.;
Fotia, Giorgio;
Pieroni, Enrico;
Maggio, Fabio;
Mancosu, Gianmaria;
De La Fuente, Alberto

Publication type:

Article

Reverse Engineering of Gene Networks with LASSO and Nonlinear Basis Functions.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 265, doi. 10.1111/j.1749-6632.2008.03764.x

By:

Gustafsson, Mika;
Hörnquist, Michael;
Lundström, Jesper;
Björkegren, Johan;
Tegnér, Jesper

Publication type:

Article

Preface.

Published in:

2009

By:

Stolovitzky, Gustavo;
Kahlem, Pascal;
Califano, Andrea

Publication type:

Other

Replaying the Evolutionary Tape: Biomimetic Reverse Engineering of Gene Networks.

Published in:

Annals of the New York Academy of Sciences, 2009, v. 1158, p. 234, doi. 10.1111/j.1749-6632.2008.03944.x

By:

Marbach, Daniel;
Mattiussi, Claudio;
Floreano, Dario

Publication type:

Article

Index of Contributors.

Published in:: Annals of the New York Academy of Sciences, 2009, v. 1158, p. 315, doi. 10.1111/j.1749-6632.2009.04613.x
Publication type:: Article