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Current Capabilities of Gut Microbiome-Based Diagnostics and the Promise of Clinical Application.
Published in:
2021
By:
- Damhorst, Gregory L;
- Adelman, Max W;
- Woodworth, Michael H;
- Kraft, Colleen S
Publication type:
journal article
Signal Versus Noise: How to Analyze the Microbiome and Make Progress on Antimicrobial Resistance.
Published in:
2021
By:
- Golob, Jonathan L;
- Rao, Krishna
Publication type:
journal article
Protecting the Microbiota.
Published in:
2021
By:
- Rooney, C M;
- Ahmed, S;
- Wilcox, M H
Publication type:
journal article
Sepsis and the Microbiome: A Vicious Cycle.
Published in:
2021
By:
- Miller, William D;
- Keskey, Robert;
- Alverdy, John C
Publication type:
journal article
Connecting the Dots: Translating the Vaginal Microbiome Into a Drug.
Published in:
2021
By:
- Lagenaur, Laurel A;
- Hemmerling, Anke;
- Chiu, Charles;
- Miller, Steve;
- Lee, Peter P;
- Cohen, Craig R;
- Parks, Thomas P
Publication type:
journal article
Mechanisms of Colonization Resistance Against Clostridioides difficile.
Published in:
2021
By:
- Pike, Colleen M;
- Theriot, Casey M
Publication type:
journal article
The State of Microbiome Science at the Intersection of Infectious Diseases and Antimicrobial Resistance.
Published in:
2021
By:
- Ranallo, Ryan T;
- McDonald, L Clifford;
- Halpin, Alison Laufer;
- Hiltke, Thomas;
- Young, Vincent B
Publication type:
journal article
Opportunities and Challenges in Development of Live Biotherapeutic Products to Fight Infections.
Published in:
2021
By:
- Ducarmon, Quinten R;
- Kuijper, Ed J;
- Olle, Bernat
Publication type:
journal article
Protection and Risk: Male and Female Genital Microbiota and Sexually Transmitted Infections.
Published in:
2021
By:
- Tuddenham, Susan;
- Ravel, Jacques;
- Marrazzo, Jeanne M
Publication type:
journal article
Interkingdom Communication and Regulation of Mucosal Immunity by the Microbiome.
Published in:
2021
By:
- Ethridge, Alexander D;
- Bazzi, Malak H;
- Lukacs, Nicholas W;
- Huffnagle, Gary B
Publication type:
journal article
Transkingdom Interactions Important for the Pathogenesis of Human Viruses.
Published in:
2021
By:
- Nishimoto, Andrew;
- Wohlgemuth, Nicholas;
- Rosch, Jason;
- Schultz-Cherry, Stacey;
- Cortez, Valerie;
- Rowe, Hannah M
Publication type:
research
Beyond Fecal Microbiota Transplantation: Developing Drugs from the Microbiome.
Published in:
2021
By:
- Gerardin, Ylaine;
- Timberlake, Sonia;
- Allegretti, Jessica R;
- Smith, Mark B;
- Kassam, Zain
Publication type:
journal article
The Lung Microbiome and Pneumonia.
Published in:
2021
By:
- Pettigrew, Melinda M;
- Tanner, Windy;
- Harris, Anthony D
Publication type:
journal article
Necrotizing Enterocolitis and the Microbiome: Current Status and Future Directions.
Published in:
2021
By:
- Thänert, Robert;
- Keen, Eric C;
- Dantas, Gautam;
- Warner, Barbara B;
- Tarr, Phillip I
Publication type:
journal article
The Gut Microbiome as a Reservoir for Antimicrobial Resistance.
Published in:
2021
By:
- Anthony, Winston E;
- Burnham, Carey-Ann D;
- Dantas, Gautam;
- Kwon, Jennie H
Publication type:
journal article
Harnessing Iron Acquisition Machinery to Target Enterobacteriaceae.
Published in:
2021
By:
- Sargun, Artur;
- Gerner, Romana R;
- Raffatellu, Manuela;
- Nolan, Elizabeth M
Publication type:
journal article
Microbiome Data Enhances Predictive Models of Lung Function in People With Cystic Fibrosis.
Published in:
2021
By:
- Zhao, Conan Y;
- Hao, Yiqi;
- Wang, Yifei;
- Varga, John J;
- Stecenko, Arlene A;
- Goldberg, Joanna B;
- Brown, Sam P
Publication type:
journal article
SARS-CoV-2 Neutralizing Human Antibodies Protect Against Lower Respiratory Tract Disease in a Hamster Model.
Published in:
2021
By:
- Haagmans, Bart L;
- Noack, Danny;
- Okba, Nisreen M A;
- Li, Wentao;
- Wang, Chunyan;
- Bestebroer, Theo;
- Vries, Rory de;
- Herfst, Sander;
- Meulder, Dennis de;
- Verveer, Elwin;
- Run, Peter van;
- Lamers, Mart M;
- Rijnders, Bart;
- Rokx, Casper;
- Kuppeveld, Frank van;
- Grosveld, Frank;
- Drabek, Dubravka;
- Kessel, Corine Geurts van;
- Koopmans, Marion;
- Bosch, Berend Jan
Publication type:
journal article
Reassessing the Link Between Healthcare Access and Outpatient Antibiotic Prescribing.
Published in:
2021
By:
- Cosgrove, Sara E;
- Klein, Eili Y;
- Klein, Eili
Publication type:
journal article
Childhood Respiratory Outpatient Visits Correlate With Socioeconomic Status and Drive Geographic Patterns in Antibiotic Prescribing.
Published in:
2021
By:
- Kissler, Stephen M;
- Klevens, R Monina;
- Barnett, Michael L;
- Grad, Yonatan H
Publication type:
journal article
Editorial Expression of Concern.
Published in:
2021
Publication type:
corrected article
Complement-Induced Endotheliopathy-Associated Vascular Microthrombosis in Coronavirus Disease 2019.
Published in:
2021
By:
- Hawley, H Bradford;
- Chang, Jae C
Publication type:
journal article
Reviewers Vol 1 2021.
Published in:
Journal of Infectious Diseases, 2021, v. 223, n. 12, p. 2200, doi. 10.1093/infdis/jiab126
Publication type:
Article
Risk Factors for Cytomegalovirus Reactivation and Association With Outcomes in Critically Ill Adults With Sepsis: A Pooled Analysis of Prospective Studies.
Published in:
2021
By:
- Imlay, Hannah;
- Dasgupta, Sayan;
- Boeckh, Michael;
- Stapleton, Renee D;
- Rubenfeld, Gordon D;
- Chen, Ying;
- Limaye, Ajit P
Publication type:
journal article
Rapid Progression of Kidney Dysfunction in People Living With HIV: Use of Polygenic and Data Collection on Adverse Events of Anti-HIV Drugs (D:A:D) Risk Scores.
Published in:
2021
By:
- Dietrich, Léna G;
- Thorball, Christian W;
- Ryom, Lene;
- Burkhalter, Felix;
- Hasse, Barbara;
- Thurnheer, Maria Christine;
- Weisser, Maja;
- Schmid, Patrick;
- Bernasconi, Enos;
- Darling, Kathrine E A;
- Buvelot, Hélène;
- Fellay, Jacques;
- Ledergerber, Bruno;
- Tarr, Philip E;
- Study, Swiss HIV Cohort;
- Swiss HIV Cohort Study
Publication type:
journal article
A Critical Role for STING Signaling in Limiting Pathogenesis of Chikungunya Virus.
Published in:
2021
By:
- Geng, Tingting;
- Lin, Tao;
- Yang, Duomeng;
- Harrison, Andrew G;
- Vella, Anthony T;
- Fikrig, Erol;
- Wang, Penghua
Publication type:
journal article
Parasite Viability as a Superior Measure of Antimalarial Drug Activity in Humans.
Published in:
2021
By:
- Rebelo, Maria;
- Pawliw, Rebecca;
- Gower, Jeremy;
- Webb, Lachlan;
- Mitchell, Hayley;
- Pava, Zuleima;
- Watts, Rebecca E;
- Davenport, Miles P;
- McCarthy, James S;
- Khoury, David S
Publication type:
journal article
Citrobacter freundii Activation of NLRP3 Inflammasome via the Type VI Secretion System.
Published in:
2021
By:
- Liu, Liyun;
- Song, Liqiong;
- Deng, Rong;
- Lan, Ruiting;
- Jin, Wenjie;
- Nhieu, Guy Tran Van;
- Cao, Huifang;
- Liu, Qin;
- Xiao, Yuchun;
- Li, Xianping;
- Meng, Guangxun;
- Ren, Zhihong;
- Tran Van Nhieu, Guy
Publication type:
journal article
Direct-Acting Antiviral Hepatitis C Treatment Cascade and Barriers to Treatment Initiation Among US Men and Women With and Without HIV.
Published in:
2021
By:
- Haley, Danielle F;
- Edmonds, Andrew;
- Ramirez, Catalina;
- French, Audrey L;
- Tien, Phyllis;
- Thio, Chloe L;
- Witt, Mallory D;
- Seaberg, Eric C;
- Plankey, Michael W;
- Cohen, Mardge H;
- Adimora, Adaora A
Publication type:
journal article
Low Influenza Vaccine Effectiveness Against A(H3N2)-Associated Hospitalizations in 2016-2017 and 2017-2018 of the Hospitalized Adult Influenza Vaccine Effectiveness Network (HAIVEN).
Published in:
2021
By:
- Martin, Emily T;
- Cheng, Caroline;
- Petrie, Joshua G;
- Alyanak, Elif;
- Gaglani, Manjusha;
- Middleton, Donald B;
- Ghamande, Shekhar;
- Silveira, Fernanda P;
- Murthy, Kempapura;
- Zimmerman, Richard K;
- Monto, Arnold S;
- Trabue, Christopher;
- Talbot, H Keipp;
- Ferdinands, Jill M;
- Investigators, HAIVEN Study;
- HAIVEN Study Investigators
Publication type:
journal article
A Multiancestry Sex-Stratified Genome-Wide Association Study of Spontaneous Clearance of Hepatitis C Virus.
Published in:
2021
By:
- Vergara, Candelaria;
- Valencia, Ana;
- Thio, Chloe L;
- Goedert, James J;
- Mangia, Alessandra;
- Piazzolla, Valeria;
- Johnson, Eric;
- Kral, Alex H;
- O'Brien, Thomas R;
- Mehta, Shruti H;
- Kirk, Gregory D;
- Kim, Arthur Y;
- Lauer, Georg M;
- Chung, Raymond T;
- Cox, Andrea L;
- Peters, Marion G;
- Khakoo, Salim I;
- Alric, Laurent;
- Cramp, Matthew E;
- Donfield, Sharyne M
Publication type:
journal article
Differences in Factors Associated With High- and Low-Risk Oral Human Papillomavirus Genotypes in Men.
Published in:
2021
By:
- Bettampadi, Deepti;
- Dickey, Brittney;
- Abrahamsen, Martha;
- Sirak, Bradley;
- Baggio, Maria Luiza;
- Galan, Lenice;
- Silva, Roberto Carvalho;
- Villa, Luisa;
- Ponce, Eduardo Lazcano;
- Giuliano, Anna R
Publication type:
journal article
Clinical and Immunologic Predictors of Mycobacterium avium Complex Immune Reconstitution Inflammatory Syndrome in a Contemporary Cohort of Patients With Human Immunodeficiency Virus.
Published in:
2021
By:
- Breglio, Kimberly F;
- Vinhaes, Caian L;
- Arriaga, María B;
- Nason, Martha;
- Roby, Gregg;
- Adelsberger, Joseph;
- Andrade, Bruno B;
- Sheikh, Virginia;
- Sereti, Irini
Publication type:
journal article
Bacterial Communities Associated With Abnormal Nugent Score in Postmenopausal Versus Premenopausal Women.
Published in:
2021
By:
- Mitchell, Caroline M;
- Srinivasan, Sujatha;
- Ma, Nanxun;
- Reed, Susan D;
- Wu, Michael C;
- Hoffman, Noah G;
- Valint, Daniel J;
- Proll, Sean;
- Fiedler, Tina L;
- Agnew, Kathy J;
- Guthrie, Katherine A;
- Fredricks, David N
Publication type:
journal article
Differences in Influenza-Specific CD4 T-Cell Mediated Immunity Following Acute Infection Versus Inactivated Vaccination in Children.
Published in:
2021
By:
- Shannon, Ian;
- White, Chantelle L;
- Yang, Hongmei;
- Nayak, Jennifer L
Publication type:
journal article
Impact of Immune Reconstitution-Induced Hepatic Flare on Hepatitis B Surface Antigen Loss in Hepatitis B Virus/Human Immunodeficiency Virus-1 Coinfected Patients.
Published in:
2021
By:
- Yoshikawa, Shiori;
- Yoshio, Sachiyo;
- Yoshida, Yuichi;
- Tsutsui, Yuriko;
- Kawai, Hironari;
- Yamazoe, Taiji;
- Mori, Taizo;
- Osawa, Yosuke;
- Sugiyama, Masaya;
- Iwamoto, Masashi;
- Watashi, Koichi;
- Kawaguchi, Takumi;
- Akita, Tomoyuki;
- Tanaka, Junko;
- Kikuchi, Yoshimi;
- Mizokami, Masashi;
- Oka, Shinichi;
- Kanto, Tatsuya;
- Gatanaga, Hiroyuki
Publication type:
journal article
Role for Maternal Asthma in Severe Human Metapneumovirus Lung Disease Susceptibility in Children.
Published in:
2021
By:
- Libster, Romina;
- Esteban, Ignacio;
- Bianchi, Alejandra;
- Grimaldi, Luciano Alva;
- Dueñas, Karina;
- Sancillo, Andrea;
- Rodriguez, Andrea;
- Ferrero, Fernando;
- Stein, Katherine;
- Acosta, Patricio L;
- Ferolla, Fausto M;
- Bergel, Eduardo;
- Caballero, Mauricio T;
- Polack, Fernando P;
- Network, for the INFANT Respiratory;
- Alva Grimaldi, Luciano;
- INFANT Respiratory Network
Publication type:
journal article
Transmission Dynamics and Microevolution of Neisseria meningitidis During Carriage and Invasive Disease in High School Students in Georgia and Maryland, 2006-2007.
Published in:
2021
By:
- Mustapha, Mustapha M;
- Marsh, Jane W;
- Shutt, Kathleen A;
- Schlackman, Jessica;
- Ezeonwuka, Chinelo;
- Farley, Monica M;
- Stephens, David S;
- Wang, Xin;
- Tyne, Daria Van;
- Harrison, Lee H;
- Van Tyne, Daria
Publication type:
journal article
Hospitalization Rates and Causes Among Persons With HIV in the United States and Canada, 2005-2015.
Published in:
2021
By:
- Davy-Mendez, Thibaut;
- Napravnik, Sonia;
- Hogan, Brenna C;
- Althoff, Keri N;
- Gebo, Kelly A;
- Moore, Richard D;
- Horberg, Michael A;
- Silverberg, Michael J;
- Gill, M John;
- Crane, Heidi M;
- Marconi, Vincent C;
- Bosch, Ronald J;
- Colasanti, Jonathan A;
- Sterling, Timothy R;
- Mathews, W Christopher;
- Mayor, Angel M;
- Nanditha, Ni Gusti Ayu;
- Buchacz, Kate;
- Li, Jun;
- Rebeiro, Peter F
Publication type:
journal article
Diphtheria-Tetanus-Pertussis (DTP) Vaccine Is Associated With Increased female-Male Mortality. Studies of DTP administered before and after measles vaccine.
Published in:
2021
By:
- Hanifi, Syed Manzoor Ahmed;
- Fisker, Ane Bærent;
- Welaga, Paul;
- Rieckmann, Andreas;
- Jensen, Aksel Georg;
- Benn, Christine Stabell;
- Aaby, Peter
Publication type:
journal article
Broad Severe Acute Respiratory Syndrome Coronavirus 2 Cell Tropism and Immunopathology in Lung Tissues From Fatal Coronavirus Disease 2019.
Published in:
2021
By:
- Silva, Suzane Ramos da;
- Ju, Enguo;
- Meng, Wen;
- Mondolfi, Alberto E Paniz;
- Dacic, Sanja;
- Green, Anthony;
- Bryce, Clare;
- Grimes, Zachary;
- Fowkes, Mary;
- Sordillo, Emilia M;
- Cordon-Cardo, Carlos;
- Guo, Haitao;
- Gao, Shou-Jiang;
- Ramos da Silva, Suzane;
- Paniz Mondolfi, Alberto E
Publication type:
journal article
Clinical and Epidemiological Findings from Enhanced Monkeypox Surveillance in Tshuapa Province, Democratic Republic of the Congo During 2011-2015.
Published in:
2021
By:
- Whitehouse, Erin R;
- Bonwitt, Jesse;
- Hughes, Christine M;
- Lushima, Robert Shongo;
- Likafi, Toutou;
- Nguete, Beatrice;
- Kabamba, Joelle;
- Monroe, Benjamin;
- Doty, Jeffrey B;
- Nakazawa, Yoshinori;
- Damon, Inger;
- Malekani, Jean;
- Davidson, Whitni;
- Wilkins, Kimberly;
- Li, Yu;
- Radford, Kay W;
- Schmid, D Scott;
- Pukuta, Elisabeth;
- Muyamuna, Elisabeth;
- Karhemere, Stomy
Publication type:
journal article
The Evolving Epidemiology of Human Monkeypox: Questions Still to Be Answered.
Published in:
2021
By:
- Heymann, David L;
- Simpson, Karl
Publication type:
Editorial
Using NS1 Flavivirus Protein Microarray to Infer Past Infecting Dengue Virus Serotype and Number of Past Dengue Virus Infections in Vietnamese Individuals.
Published in:
2021
By:
- Thao, Tran Thi Nhu;
- Bruin, Erwin de;
- Phuong, Huynh Thi;
- Vy, Nguyen Ha Thao;
- van den Ham, Henk-Jan;
- Wills, Bridget A;
- Tien, Nguyen Thi Hanh;
- Duyen, Huynh Thi Le;
- Trung, Dinh The;
- Whitehead, Stephen S;
- Boni, Maciej F;
- Koopmans, Marion;
- Clapham, Hannah E;
- de Bruin, Erwin;
- Thao Vy, Nguyen Ha;
- Le Duyen, Huynh Thi
Publication type:
journal article
HIV-1 Transcription but Not Intact Provirus Levels are Associated With Systemic Inflammation.
Published in:
2021
By:
- Olson, Alex;
- Coote, Carolyn;
- Snyder-Cappione, Jennifer E;
- Lin, Nina;
- Sagar, Manish
Publication type:
journal article
Maternal Epstein-Barr Virus-Specific Antibodies and Risk of Infection in Ugandan Infants.
Published in:
2021
By:
- Minab, Rana;
- Bu, Wei;
- Nguyen, Hanh;
- Wall, Abigail;
- Sholukh, Anton M;
- Huang, Meei-Li;
- Ortego, Michael;
- Krantz, Elizabeth M;
- Irvine, Michael;
- Casper, Corey;
- Orem, Jackson;
- McGuire, Andrew T;
- Cohen, Jeffrey I;
- Gantt, Soren
Publication type:
journal article
The Burden of Malaria in the Democratic Republic of the Congo.
Published in:
2021
By:
- Deutsch-Feldman, Molly;
- Parr, Jonathan B;
- Keeler, Corinna;
- Brazeau, Nicholas F;
- Goel, Varun;
- Emch, Michael;
- Edwards, Jessie K;
- Kashamuka, Melchior;
- Tshefu, Antoinette K;
- Meshnick, Steven R
Publication type:
journal article
Using Quasispecies Patterns of Hepatitis B Virus to Predict Hepatocellular Carcinoma With Deep Sequencing and Machine Learning.
Published in:
2021
By:
- Chen, Shipeng;
- Zhang, Zihan;
- Wang, Ying;
- Fang, Meng;
- Zhou, Jun;
- Li, Ya;
- Dai, Erhei;
- Feng, Zhaolei;
- Wang, Hao;
- Yang, Zaixing;
- Li, Yongwei;
- Huang, Xianzhang;
- Jia, Jian'an;
- Li, Shuang;
- Huang, Chenjun;
- Tong, Lin;
- Xiao, Xiao;
- He, Yutong;
- Duan, Yong;
- Zhu, Shanfeng
Publication type:
journal article
No Changes in Human Immunodeficiency Virus (HIV) Suppression and Inflammatory Markers in Cerebrospinal Fluid in Patients Randomly Switched to Dolutegravir Plus Lamivudine (Spanish HIV/AIDS Research Network, PreEC/RIS 62).
Published in:
2021
By:
- Tiraboschi, Juan M;
- Rojas, Jhon;
- Zetterberg, Henrik;
- Blennow, Kaj;
- Niubo, Jordi;
- Gostner, Johanna;
- Navarro-Alcaraz, Antonio;
- Piatti, Camila;
- Fuchs, Dietmar;
- Gisslén, Magnus;
- Rigo-Bonnin, Raul;
- Martinez, Esteban;
- Podzamczer, Daniel
Publication type:
journal article
Reply to Ringlander et al.
Published in:
2021
By:
- Monto, Arnold S
Publication type:
Letter

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