Works matching Genome walking

Results: 384

Faster, safer, and better DNA purification by ultracentrifugation using GelRed stain and development of mismatch oligo DNA for genome walking.

Published in:

Bioscience, Biotechnology & Biochemistry, 2014, v. 78, n. 11, p. 1902, doi. 10.1080/09168451.2014.940831

By:

Ichiro Kasajima;
Norihiro Ohtsubo;
Katsutomo Sasaki

Publication type:

Article

High Expression Level of mok E Enhances the Production of Monacolin K in Monascus.

Published in:

Food Biotechnology, 2018, v. 32, n. 1, p. 35, doi. 10.1080/08905436.2017.1413985

By:

Lin, Lin;
Wu, Shufen;
Li, Zhenjing;
Ren, Zhiyuan;
Chen, Mianhua;
Wang, Changlu

Publication type:

Article

Optimization of a genome-walking method to suit GC-rich template DNA from biotechnological relevant Actinobacteria.

Published in:

Journal of Basic Microbiology, 2010, v. 50, n. 5, p. 499, doi. 10.1002/jobm.201000032

By:

Gröning, Janosch A. D.;
Tischler, Dirk;
Kaschabek, Stefan R.;
Schlömann, Michael

Publication type:

Article

Primer extension refractory PCR: an efficient and reliable genome walking method.

Published in:

Molecular Genetics & Genomics, 2024, v. 299, n. 1, p. 1, doi. 10.1007/s00438-024-02126-5

By:

Li, Haixing;
Lin, Zhiyu;
Guo, Xinyue;
Pan, Zhenkang;
Pan, Hao;
Wang, Dongying

Publication type:

Article

Fusion primer driven racket PCR: A novel tool for genome walking.

Published in:

Frontiers in Genetics, 2022, v. 13, p. 01, doi. 10.3389/fgene.2022.969840

By:

Jinfeng Pei;
Tianyi Sun;
Lingqin Wang;
Zhenkang Pan;
Xinyue Guo;
Haixing Li

Publication type:

Article

Fork PCR: a universal and efficient genome-walking tool.

Published in:

Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1265580

By:

Hao Pan;
Xinyue Guo;
Zhenkang Pan;
Rongrong Wang;
Bingkun Tian;
Haixing Li

Publication type:

Article

Genome Walking by Next Generation Sequencing Approaches.

Published in:

Biology (2079-7737), 2012, v. 1, n. 3, p. 495, doi. 10.3390/biology1030495

By:

Volpicella, Mariateresa;
Leoni, Claudia;
Costanza, Alessandra;
Fanizza, Immacolata;
Placido, Antonio;
Ceci, Luigi R.

Publication type:

Article

Linear and exponential TAIL-PCR: a method for efficient and quick amplification of flanking sequences adjacent to Tn5 transposon insertion sites.

Published in:

AMB Express, 2017, v. 7, n. 1, p. 1, doi. 10.1186/s13568-017-0495-x

By:

Jia, Xianbo;
Lin, Xinjian;
Chen, Jichen

Publication type:

Article

Efficient amplification of genes involved in microbial secondary metabolism by an improved genome walking method.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 87, n. 2, p. 757, doi. 10.1007/s00253-010-2569-4

By:

Jing Deng;
Maochen Wei;
Boyang Yu;
Yijun Chen

Publication type:

Article

A Primer-Based Approach to Genome Walking.

Published in:

Plant Molecular Biology Reporter, 2006, v. 24, n. 2, p. 237, doi. 10.1007/BF02914062

By:

Ashoub, Ahmed;
Abdalla, Khaled S.

Publication type:

Article

Loop-linker PCR: An advanced PCR technique for genome walking.

Published in:

IUBMB Life, 2012, v. 64, n. 10, p. 841, doi. 10.1002/iub.1069

By:

Trinh, Quoclinh;
Shi, Hui;
Xu, Wentao;
Hao, Junran;
Luo, Yunbo;
Huang, Kunlun

Publication type:

Article

A genome walking strategy for the identification of nucleotide sequences adjacent to known regions.

Published in:

Biotechnology Letters, 2013, v. 35, n. 2, p. 279, doi. 10.1007/s10529-012-1076-3

By:

Wang, Hailong;
Yao, Ting;
Cai, Mei;
Xiao, Xiuqing;
Ding, Xuezhi;
Xia, Liqiu

Publication type:

Article

LT-RADE: An Efficient User-Friendly Genome Walking Method Applied to the Molecular Characterization of the Insertion Site of Genetically Modified Maize MON810 and Rice LLRICE62.

Published in:

Food Analytical Methods, 2013, v. 6, n. 2, p. 705, doi. 10.1007/s12161-012-9438-y

By:

Spalinskas, R.;
Bulcke, M.;
Eede, G.;
Milcamps, Anne

Publication type:

Article

Stepwise partially overlapping primer-based PCR for genome walking.

Published in:

AMB Express, 2018, v. 8, n. 1, p. 1, doi. 10.1186/s13568-018-0610-7

By:

Chang, Kunpeng;
Wang, Qiong;
Shi, Xiaofei;
Wang, Shuixing;
Wu, Hongjing;
Nie, Lijuan;
Li, Haixing

Publication type:

Article

Molecular Cloning and Structure-Function Analysis of a Trypsin Inhibitor from Tartary Buckwheat and Its Application in Combating Phytopathogenic Fungi.

Published in:

Agronomy, 2018, v. 8, n. 4, p. 46, doi. 10.3390/agronomy8040046

By:

Jing-jun Ruan;
Shan-jun Tian;
Jun Yan;
Hui Chen;
Ru-hong Xu;
Jian-ping Cheng

Publication type:

Article

Generation and mapping of SCAR and CAPS markers linked to the seed coat color gene in Brassica napus using a genome-walking technique.

Published in:

Genome, 2007, v. 50, n. 7, p. 611, doi. 10.1139/G07-044

By:

Shushu Xiao;
Jinsong Xu;
Yuan Li;
Lei Zhang;
Shijun Shi;
Shuwen Shi;
Jiangsheng Wu;
Kede Liu

Publication type:

Article

Isolating promoters of multigene family members from the polyploid sugarcane genome by PCR-based walking in BAC DNA.

Published in:

Genome, 2010, v. 53, n. 10, p. 840

By:

Damaj, Mona B.;
Beremand, Phillip D.;
Buenrostro-Nava, Marco T.;
Ivy, John;
Kumpatla, Siva P.;
Jifon, John;
Beyene, Getu;
Yu, Qingyi;
Thomas, Terry L.;
Mirkov, T. Erik

Publication type:

Article

Palindromic sequence-targeted (PST) PCR: a rapid and efficient method for high-throughput gene characterization and genome walking.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-54168-0

By:

Kalendar, Ruslan;
Shustov, Alexandr V.;
Seppänen, Mervi M.;
Schulman, Alan H.;
Stoddard, Frederick L.

Publication type:

Article

Partially Overlapping Primer-Based PCR for Genome Walking.

Published in:

PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0120139

By:

Li, Haixing;
Ding, Dongqin;
Cao, Yusheng;
Yu, Bo;
Guo, Liang;
Liu, Xiaohua

Publication type:

Article

Randomly broken fragment PCR with 5' end-directed adaptor for genome walking.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep03465

By:

Wentao Xu;
Ying Shang;
Pengyu Zhu;
Zhifang Zhai;
Jing He;
Kunlun Huang;
Yunbo Luo

Publication type:

Article

Identification of a seed maturation protein gene from Coffea arabica (CaSMP) and analysis of its promoter activity in tomato.

Published in:

Plant Cell Reports, 2018, v. 37, n. 9, p. 1257, doi. 10.1007/s00299-018-2310-9

By:

Quintero, Fabíola OCampo;
Pinto, Layra G.;
Barsalobres-Cavallari, Carla F.;
Arcuri, Mariana de Lara Campos;
Pino, Lilian Ellen;
Peres, Lázaro Eustáquio Pereira;
Maluf, Mirian P.;
Maia, Ivan G.

Publication type:

Article

The Draft Genome of the Invasive Walking Stick, Medauroidea extradendata, Reveals Extensive Lineage-Specific Gene Family Expansions of Cell Wall Degrading Enzymes in Phasmatodea.

Published in:

G3: Genes | Genomes | Genetics, 2018, v. 8, n. 5, p. 1403, doi. 10.1534/g3.118.200204

By:

Brand, Philipp;
Wei Lin;
Johnson, Brian R.

Publication type:

Article

Development of event-specific qualitative and quantitative PCR detection methods for the transgenic maize BVLA430101.

Published in:

European Food Research & Technology, 2016, v. 242, n. 8, p. 1277, doi. 10.1007/s00217-015-2631-7

By:

Rao, Jun;
Yang, Litao;
Guo, Jinchao;
Quan, Sheng;
Chen, Guihua;
Zhao, Xiangxiang;
Zhang, Dabing;
Shi, Jianxin

Publication type:

Article

Revised Selection Criteria for Candidate Restriction Enzymes in Genome Walking.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035117

By:

Taheri, Ali;
Robinson, Stephen J.;
Parkin, Isobel;
Gruber, Margaret Y.

Publication type:

Article

Genome sequence of walking catfish (Clarias batrachus) provides insights into terrestrial adaptation.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5355-9

By:

Li, Ning;
Bao, Lisui;
Zhou, Tao;
Yuan, Zihao;
Liu, Shikai;
Dunham, Rex;
Li, Yuanning;
Wang, Kun;
Xu, Xiaoyan;
Jin, Yulin;
Zeng, Qifan;
Gao, Sen;
Fu, Qiang;
Liu, Yang;
Yang, Yujia;
Li, Qi;
Meyer, Axel;
Gao, Dongya;
Liu, Zhanjiang

Publication type:

Article

Tracembler -- software for in-silico chromosome walking inunassembled genomes.

Published in:: BMC Bioinformatics, 2007, v. 8, p. 151, doi. 10.1186/1471-2105-8-151
Publication type:: Article

Automation of PacBio SMRTbell NGS library preparation for bacterial genome sequencing.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0239-1

By:

Nguyet Kong;
Ng, Whitney;
Kao Thao;
Agulto, Regina;
Weis, Allison;
Spittle Kim, Kristi;
Korlach, Jonas;
Hickey, Luke;
Kelly, Lenore;
Lappin, Stephen;
Weimer, Bart C.

Publication type:

Article

Rapid genome walking: a simplified oligo-cassette mediated polymerase chain reaction using a single genome-specific primer.

Published in:

Nucleic Acids Research, 2000, v. 28, n. 11, p. e55, doi. 10.1093/nar/28.11.e55

By:

Kilstrup, Mogens;
Kristiansen, Klaus N.

Publication type:

Article

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S8

By:

Takahiro Mimori;
Naoki Nariai;
Kaname Kojima;
Mamoru Takahashi;
Akira Ono;
Yukuto Sato;
Yumi Yamaguchi-Kabata;
Masao Nagasaki

Publication type:

Article

Ice bucket challenge bears fruit for amyotrophic lateral sclerosis.

Published in:

Journal of Neurology, 2016, v. 263, n. 11, p. 2355, doi. 10.1007/s00415-016-8297-7

By:

Hrastelj, James;
Robertson, Neil

Publication type:

Article

H-CLAP: hierarchical clustering within a linear array with an application in genetics.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2015, v. 14, n. 2, p. 125, doi. 10.1515/sagmb-2013-0076

By:

Ghosh, Samiran;
Townsend, Jeffrey P.

Publication type:

Article

Study of triplet periodicity differences inside and between genomes.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2015, v. 14, n. 2, p. 113, doi. 10.1515/sagmb-2013-0063

By:

Suvorova, Yulia M.;
Korotkov, Eugene V.

Publication type:

Article

popSTR: population-scale detection of STR variants.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4041, doi. 10.1093/bioinformatics/btw568

By:

Kristmundsdóttir, Snædís;
Sigurpálsdóttir, Brynja D.;
Kehr, Birte;
Halldórsson, Bjarni V.

Publication type:

Article

RUCS: rapid identification of PCR primers for unique core sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 3917, doi. 10.1093/bioinformatics/btx526

By:

Thomsen, Martin Christen Frølund;
Hasman, Henrik;
Westh, Henrik;
Kaya, Hülya;
Lund, Ole

Publication type:

Article

ReliableGenome: annotation of genomic regions with high/low variant calling concordance.

Published in:

Bioinformatics, 2017, v. 33, n. 2, p. 155, doi. 10.1093/bioinformatics/btw587

By:

Popitsch, Niko;
Schuh, Anna;
Taylor, Jenny C.

Publication type:

Article

PrimerDesign-M: a multiple-alignment based multiple-primer design tool for walking across variable genomes.

Published in:

2015

By:

Hyejin Yoon;
Leitner, Thomas

Publication type:

Product Review

Age-Related Alterations in DNA Methylation and APETALA2 (AP2) Levels in Herbaceous Peony (Paeonia lactiflora Pall.).

Published in:

Phyton (0031-9457), 2022, v. 91, n. 9, p. 2005, doi. 10.32604/phyton.2022.021062

By:

Yanqing Wu;
Jiao Liu;
Yuhan Tang;
Daqiu Zhao;
Jun Tao

Publication type:

Article

Genome walking in eukaryotes.

Published in:

FEBS Journal, 2011, v. 278, n. 21, p. 3953, doi. 10.1111/j.1742-4658.2011.08307.x

By:

Leoni, Claudia;
Volpicella, Mariateresa;
De Leo, Francesca;
Gallerani, Raffaele;
Ceci, Luigi R.

Publication type:

Article

Identification of a functional antioxidant responsive element in the promoter of the Chinese hamster carbonyl reductase 3 ( Chcr3) gene.

Published in:

Cell Biology International, 2015, v. 39, n. 7, p. 808, doi. 10.1002/cbin.10450

By:

Miura, Takeshi;
Taketomi, Ayako;
Nakabayashi, Toshikatsu;
Nishinaka, Toru;
Terada, Tomoyuki

Publication type:

Article

MOLECULAR CHARACTERIZATION OF POTATO VIRUS Y INDUCING POTATO TUBER NECROTIC RINGSPOT DISEASE IN SERBIA.

Published in:

Genetika (0534-0012), 2016, v. 48, n. 2, p. 487, doi. 10.2298/GENSR1602487R

By:

RISTIC, Danijela;
VUCUROVIC, Ivan;
KUZMANOVIC, Slobodan;
MILOSEVIC, Drago;
GASIC, Katarina;
DOLOVAC, Nenad;
STAROVIC, Mira

Publication type:

Article

Next-generation sequencing-based genome diagnostics across clinical genetics centers: implementation choices and their effects.

Published in:

European Journal of Human Genetics, 2015, v. 23, n. 9, p. 1142, doi. 10.1038/ejhg.2014.279

By:

Vrijenhoek, Terry;
Kraaijeveld, Ken;
Elferink, Martin;
de Ligt, Joep;
Kranendonk, Elcke;
Santen, Gijs;
Nijman, Isaac J;
Butler, Derek;
Claes, Godelieve;
Costessi, Adalberto;
Dorlijn, Wim;
van Eyndhoven, Winfried;
Halley, Dicky J J;
van den Hout, Mirjam C G N;
van Hove, Steven;
Johansson, Lennart F;
Jongbloed, Jan D H;
Kamps, Rick;
Kockx, Christel E M;
de Koning, Bart

Publication type:

Article

Sequence Mutations of Genes Pertaining to Malignancy in Cancer.

Published in:

Journal of Data Science, 2013, v. 11, n. 4, p. 673

By:

Nardnisa Sintupisut;
Chen-Hsiang Yeang

Publication type:

Article

VarGenius executes cohort-level DNA-seq variant calling and annotation and allows to manage the resulting data through a PostgreSQL database.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2532-4

By:

Musacchia, F.;
Ciolfi, A.;
Mutarelli, M.;
Bruselles, A.;
Castello, R.;
Pinelli, M.;
Basu, S.;
Banfi, S.;
Casari, G.;
Tartaglia, M.;
Nigro, V.

Publication type:

Article

A statistical framework for detecting mislabeled and contaminated samples using shallow-depth sequence data.

Published in:

BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2512-8

By:

Chan, Ariel W.;
Williams, Amy L.;
Jannink, Jean-Luc

Publication type:

Article

Identification of micro RNAs and their mRNA targets during soybean nodule development: functional analysis of the role of miR393j-3p in soybean nodulation.

Published in:

New Phytologist, 2015, v. 207, n. 3, p. 748, doi. 10.1111/nph.13365

By:

Yan, Zhe;
Hossain, Md Shakhawat;
Arikit, Siwaret;
Valdés‐López, Oswaldo;
Zhai, Jixian;
Wang, Jun;
Libault, Marc;
Ji, Tieming;
Qiu, Lijuan;
Meyers, Blake C.;
Stacey, Gary

Publication type:

Article

More data than you can imagine.

Published in:

EE: Evaluation Engineering, 2015, v. 54, n. 5, p. 20

By:

Lecklider, Tom

Publication type:

Article

A defining decade in DNA sequencing.

Published in:

Nature Methods, 2014, v. 11, n. 10, p. 1003, doi. 10.1038/nmeth.3106

By:

McPherson, John D

Publication type:

Article

PCR Genome Walking Identifies a Genetic Locus Comprising Two Heat Shock Genes (hslV and hslU) from Leptospira borgpetersenii Serovar Hardjobovis.

Published in:

Current Microbiology, 2001, v. 43, n. 6, p. 452, doi. 10.1007/s002840010338

By:

Lin, Min;
Li, Yijing

Publication type:

Article

Genome sequences of a capulavirus infecting Plantago lanceolata in the Åland archipelago of Finland.

Published in:

2017

By:

Susi, Hanna;
Laine, Anna-Liisa;
Filloux, Denis;
Kraberger, Simona;
Farkas, Kata;
Bernardo, Pauline;
Frilander, Mikko;
Martin, Darren;
Varsani, Arvind;
Roumagnac, Philippe

Publication type:

Report

Walking Together: Cross-Protection, Genome Conservation, and the Replication Machinery of Citrus tristeza virus.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 12, p. 1353, doi. 10.3390/v12121353

By:

Folimonova, Svetlana Y.;
Achor, Diann;
Bar-Joseph, Moshe;
Lemaire, Olivier;
Herrbach, Etienne

Publication type:

Article