Works matching DNA-binding proteins

Results: 5000

PredPSD: A Gradient Tree Boosting Approach for Single-Stranded and Double-Stranded DNA Binding Protein Prediction.

Published in:

Molecules, 2020, v. 25, n. 1, p. 98, doi. 10.3390/molecules25010098

By:

Tan, Changgeng;
Wang, Tong;
Yang, Wenyi;
Deng, Lei

Publication type:

Article

PseDNA-Pro: DNA-Binding Protein Identification by Combining Chou's PseAAC and Physicochemical Distance Transformation.

Published in:

Molecular Informatics, 2015, v. 34, n. 1, p. 8, doi. 10.1002/minf.201400025

By:

Liu, Bin;
Xu, Jinghao;
Fan, Shixi;
Xu, Ruifeng;
Zhou, Jiyun;
Wang, Xiaolong

Publication type:

Article

Protein–DNA binding in high-resolution.

Published in:

Critical Reviews in Biochemistry & Molecular Biology, 2015, v. 50, n. 4, p. 269, doi. 10.3109/10409238.2015.1051505

By:

Mahony, Shaun;
Pugh, B. Franklin

Publication type:

Article

Laminar distribution of the pathological changes in sporadic frontotemporal lobar degeneration with transactive response (TAR) DNA-binding protein of 43 kDa (TDP-43) proteinopathy: a quantitative study using polynomial curve fitting.

Published in:

Neuropathology & Applied Neurobiology, 2013, v. 39, n. 4, p. 335, doi. 10.1111/j.1365-2990.2012.01291.x

By:

Armstrong, R. A.;
Hamilton, R. L.;
Mackenzie, I. R. A.;
Hedreen, J.;
Cairns, N. J.

Publication type:

Article

BINARY CLASSIFICATION OF UNCHARACTERIZED PROTEINS INTO DNA BINDING/NON-DNA BINDING PROTEINS FROM SEQUENCE DERIVED FEATURES USING ANN.

Published in:

Digest Journal of Nanomaterials & Biostructures (DJNB), 2009, v. 4, n. 4, p. 775

By:

Patel, Amiya Kumar;
Patel, Seema;
Naik, Pradeep Kumar

Publication type:

Article

Identification of DNA-Binding Proteins Using Mixed Feature Representation Methods.

Published in:

Molecules, 2017, v. 22, n. 10, p. 1602, doi. 10.3390/molecules22101602

By:

Kaiyang Qu;
Ke Han;
Song Wu;
Guohua Wang;
Leyi Wei

Publication type:

Article

5-Methylcytosine containing CG decamer as Z-DNA embedded sequence for a potential Z-DNA binding protein probe.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2018, v. 37, n. 9, p. 485, doi. 10.1080/15257770.2018.1498512

By:

Vongsutilers, Vorasit;
Sawaspaiboontawee, Kulwadee;
Tuesuwan, Bodin;
Shinohara, Yoko;
Kawai, Gota

Publication type:

Article

Divergent dimerization mechanisms and conserved DNA-binding function in PFam12 proteins of Borrelia burgdorferi.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-93944-z

By:

Brangulis, Kalvis;
Tupina, Dagnija;
Sinicina, Everita Elina;
Zelencova-Gopejenko, Diana;
Akopjana, Inara;
Bogans, Janis;
Tars, Kaspars

Publication type:

Article

Adsorption of DNA binding proteins to functionalized carbon nanotube surfaces with and without DNA wrapping.

Published in:

European Biophysics Journal, 2017, v. 46, n. 6, p. 541, doi. 10.1007/s00249-017-1200-3

By:

Ishibashi, Yu;
Oura, Shusuke;
Umemura, Kazuo

Publication type:

Article

Sequence‐based Detection of DNA‐binding Proteins using Multiple‐view Features Allied with Feature Selection.

Published in:

Molecular Informatics, 2020, v. 39, n. 8, p. 1, doi. 10.1002/minf.202000006

By:

Zhou, Liling;
Song, Xiaoning;
Yu, Dong‐Jun;
Sun, Jun

Publication type:

Article

Sequence, structure, and function of the Dps DNA-binding protein from Deinococcus wulumuqiensis R12.

Published in:

Microbial Cell Factories, 2022, v. 21, n. 1, p. 1, doi. 10.1186/s12934-022-01857-7

By:

Chen, Yao;
Yang, Zhihan;
Zhou, Xue;
Jin, Mengmeng;
Dai, Zijie;
Ming, Dengming;
Zhang, Zhidong;
Zhu, Liying;
Jiang, Ling

Publication type:

Article

Polycarcin V induces DNA-damage response and enables the profiling of DNA-binding proteins.

Published in:

National Science Review, 2022, v. 9, n. 11, p. 1, doi. 10.1093/nsr/nwac046

By:

Yue, Zongwei;
Wu, Fan;
Guo, Fusheng;
Park, Jiyeong;
Wang, Jin;
Zhang, Liyun;
Liao, Daohong;
Li, Wenyang;
Schärer, Orlando D;
Lei, Xiaoguang

Publication type:

Article

Sandwich-type aptasensor employing modified aptamers and enzyme-DNA binding protein conjugates.

Published in:

Analytical & Bioanalytical Chemistry, 2019, v. 411, n. 16, p. 3581, doi. 10.1007/s00216-019-01839-6

By:

Aktas, Gülsen Betül;
Skouridou, Vasso;
Masip, Lluis

Publication type:

Article

Nucleic acid sensing with enzyme-DNA binding protein conjugates cascade and simple DNA nanostructures.

Published in:

Analytical & Bioanalytical Chemistry, 2017, v. 409, n. 14, p. 3623, doi. 10.1007/s00216-017-0304-z

By:

Aktas, Gülsen;
Skouridou, Vasso;
Masip, Lluis

Publication type:

Article

Tomato MBD5, a methyl CpG binding domain protein, physically interacting with UV-damaged DNA binding protein-1, functions in multiple processes.

Published in:

New Phytologist, 2016, v. 210, n. 1, p. 208, doi. 10.1111/nph.13745

By:

Li, Yuxiang;
Deng, Heng;
Miao, Min;
Li, Huirong;
Huang, Shengxiong;
Wang, Songhu;
Liu, Yongsheng

Publication type:

Article

Functional roles of N-terminal and C-terminal domains in the overall activity of a novel single-stranded DNA binding protein of Deinococcus radiodurans.

Published in:

FEBS Open Bio, 2015, v. 5, p. 378, doi. 10.1016/j.fob.2015.04.009

By:

Ujaoney, Aman K.;
Basu, Bhakti;
Muniyappa, K.;
Apte, Shree K.

Publication type:

Article

Predictive Recognition of DNA-binding Proteins Based on Pre-trained Language Model BERT.

Published in:

Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1142/S0219720023500282

By:

Ma, Yue;
Pei, Yongzhen;
Li, Changguo

Publication type:

Article

A Novel Family of Winged-Helix Single-Stranded DNA-Binding Proteins from Archaea.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 7, p. 3455, doi. 10.3390/ijms23073455

By:

Huang, Can;
Liu, Xuehui;
Chen, Yuanyuan;
Zhou, Junshi;
Li, Wenqian;
Ding, Niannian;
Huang, Li;
Chen, Jingyu;
Zhang, Zhenfeng

Publication type:

Article

PSFM-DBT: Identifying DNA-Binding Proteins by Combing Position Specific Frequency Matrix and Distance-Bigram Transformation.

Published in:

International Journal of Molecular Sciences, 2017, v. 18, n. 9, p. 1856, doi. 10.3390/ijms18091856

By:

Jun Zhang;
Bin Liu

Publication type:

Article

DNA immobilization and detection using DNA binding proteins.

Published in:

Analytical & Bioanalytical Chemistry, 2021, v. 413, n. 7, p. 1929, doi. 10.1007/s00216-021-03162-5

By:

Aktas, Gülsen Betül;
Ribera, Arnau;
Skouridou, Vasso;
Masip, Lluis

Publication type:

Article

PseKNC and Adaboost-Based Method for DNA-Binding Proteins Recognition.

Published in:

International Journal of Pattern Recognition & Artificial Intelligence, 2021, v. 35, n. 7, p. N.PAG, doi. 10.1142/S0218001421500221

By:

Yang, Lina;
Li, Xiangyu;
Shu, Ting;
Wang, Patrick;
Li, Xichun

Publication type:

Article

NMR elucidation of monomer–dimer transition and conformational heterogeneity in histone‐like DNA binding protein of Helicobacter pylori.

Published in:

Magnetic Resonance in Chemistry, 2018, v. 56, n. 4, p. 285, doi. 10.1002/mrc.4701

By:

Jaiswal, Nancy;
Raikwal, Nisha;
Pandey, Himanshu;
Agarwal, Nipanshu;
Arora, Ashish;
Poluri, Krishna Mohan;
Kumar, Dinesh

Publication type:

Article

Characterization of the RstB2 protein, the DNA-binding protein of CTXϕ phage from Vibrio cholerae.

Published in:

Virus Genes, 2014, v. 48, n. 3, p. 518, doi. 10.1007/s11262-014-1053-0

By:

Falero, Alina;
Marrero, Karen;
Trigueros, Sonia;
Fando, Rafael

Publication type:

Article

Uptake and trafficking of DNA in keratinocytes: evidence for DNA-binding proteins.

Published in:

Gene Therapy, 2004, v. 11, n. 9, p. 765, doi. 10.1038/sj.gt.3302221

By:

Basner-Tschakarjan, E.;
Mirmohammadsadegh, A.;
Baer, A.;
Hengge, U. R.

Publication type:

Article

Human single-stranded DNA binding proteins are essential for maintaining genomic stability.

Published in:

BMC Molecular Biology, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2199-14-9

By:

Ashton, Nicholas W.;
Bolderson, Emma;
Cubeddu, Liza;
O'Byrne, Kenneth J.;
Richard, Derek J.

Publication type:

Article

Overexpression of the single-stranded DNA-binding protein (SSB) stabilises CAG•CTG triplet repeats in an orientation dependent manner

Published in:

FEBS Letters, 2010, v. 584, n. 1, p. 153, doi. 10.1016/j.febslet.2009.11.042

By:

Andreoni, Federica;
Darmon, Elise;
Poon, Wilson C.K.;
Leach, David R.F.

Publication type:

Article

Analysis and prediction of single-stranded and double-stranded DNA binding proteins based on protein sequences.

Published in:

BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1715-8

By:

Wei Wang;
Lin Sun;
Shiguang Zhang;
Hongjun Zhang;
Jinling Shi;
Tianhe Xu;
Keliang Li

Publication type:

Article

Clustering of Genes Coding for DNA Binding Proteins in a Regionof Atypical Evolution of the Human Genome.

Published in:

Journal of Molecular Evolution, 2004, v. 59, n. 1, p. 72, doi. 10.1007/s00239-004-2605-z

By:

Castresana, Jose;
Guigó, Roderic;
Albà, M. Mar

Publication type:

Article

Effect of DNA-binding Proteins on Terminal Deoxynucleotidyl Transferase Activity in Systems with Homopolymer Substrates.

Published in:

Applied Biochemistry & Microbiology, 2024, v. 60, n. 6, p. 1104, doi. 10.1134/S0003683824605237

By:

Sachanka, A. B.;
Shchur, V. V.;
Usanov, S. A.;
Yantsevich, A. V.

Publication type:

Article

Identification of DNA-binding proteins on human umbilical vein endothelial cell plasma membrane.

Published in:

Clinical & Experimental Immunology, 1993, v. 91, n. 1, p. 110

By:

Chan, T. M.;
Frampton, G.;
Cameron, J. S.

Publication type:

Article

The role of the mycobacterial DNA-binding protein 1 (MDP1) from Mycobacterium bovis BCG in host cell interaction.

Published in:

BMC Microbiology, 2012, v. 12, n. 1, p. 165, doi. 10.1186/1471-2180-12-165

By:

Kunisch, Ralph;
Kamal, Elisabeth;
Lewin, Astrid

Publication type:

Article

Single-Stranded DNA-Binding Proteins Mediate DSB Repair and Effectively Improve CRISPR/Cas9 Genome Editing in Escherichia coli and Pseudomonas.

Published in:

Microorganisms, 2023, v. 11, n. 4, p. 850, doi. 10.3390/microorganisms11040850

By:

Chai, Ran;
Zhang, Qi;
Wu, Jie;
Shi, Ziwen;
Li, Yanan;
Gao, Yuqian;
Qi, Yuancheng;
Qiu, Liyou

Publication type:

Article

A CELD-fusion method for rapid determination of the DNA-binding sequence specificity of novel plant DNA-binding proteins.

Published in:

2005

By:

Xue, Gang-Ping

Publication type:

Other

Tissue Binding Patterns and In Vitro Effects of Campylobacter jejuni DNA-Binding Protein from Starved Cells.

Published in:

Neurochemical Research, 2011, v. 36, n. 1, p. 58, doi. 10.1007/s11064-010-0263-7

By:

Piao, Hua;
Minohara, Motozumi;
Kawamura, Nobutoshi;
Li, Wei;
Matsushita, Takuya;
Yamasaki, Ryo;
Mizunoe, Yoshimitsu;
Kira, Jun-ichi

Publication type:

Article

Drosophila Damaged DNA Binding Protein 1 Contributes to Genome Stability in Somatic Cells.

Published in:

Journal of Biochemistry, 2006, v. 139, n. 1, p. 51, doi. 10.1093/jb/mvj006

By:

Shimanouchi, Kaori;
Takata, Kei-ichi;
Yamaguchi, Masamitsu;
Murakami, Shizuka;
Ishikawa, Gen;
Takeuchi, Ryo;
Kanai, Yoshihiro;
Ruike, Tatsushi;
Nakamura, Ryoichi;
Abe, Yoko;
Sakaguchi, Kengo

Publication type:

Article

Exo-Taq-Based Detection of DNA-Binding Protein for Homogeneous and Microarray Format.

Published in:

Journal of Biochemistry, 2005, v. 138, n. 4, p. 473, doi. 10.1093/jb/mvi137

By:

Fukumori, Takashi;
Miyachi, Hirotaka;
Yokoyama, Kenji

Publication type:

Article

Contribution of a Salt Bridge to the Thermostability of DNA Binding Protein HU from Bacillus stearothermophilus Determined by Site-Directed Mutagenesis.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 3, p. 448, doi. 10.1093/oxfordjournals.jbchem.a021609

By:

Kawamura, Shunsuke;
Tanaka, Isao;
Yamasaki, Nobuyuki;
Kimura, Makoto

Publication type:

Article

MicroRNA‐183‐5p regulates TAR DNA‐binding protein 43 neurotoxicity via SQSTM1/p62 in amyotrophic lateral sclerosis.

Published in:

Journal of Neurochemistry, 2023, v. 164, n. 5, p. 643, doi. 10.1111/jnc.15744

By:

Kim, Han‐Cheon;
Zhang, Yan;
King, Peter H.;
Lu, Liang

Publication type:

Article

The structural basis of DNA binding by the single-stranded DNA-binding protein from Sulfolobus solfataricus.

Published in:

Biochemical Journal, 2015, v. 465, n. 2, p. 337, doi. 10.1042/BJ20141140

By:

Gamsjaeger, Roland;
Kariawasam, Ruvini;
Gimenez, Adrian X.;
Touma, Christine;
McIlwain, Elysse;
Bernardo, Ray E.;
Shepherd, Nicholas E.;
Ataide, Sandro F.;
Qihan Dong;
Richard, Derek J.;
White, Malcolm F.;
Cubeddu, Liza

Publication type:

Article

Low Expression of Single-stranded DNA Binding Protein 2 (SSBP2) Predicts Unfavourable Postoperative Outcomes in Patients With Clear Cell Renal Cell Carcinoma.

Published in:

In Vivo, 2020, v. 34, n. 1, p. 101, doi. 10.21873/invivo.11750

By:

HYUNSUNG KIM;
YESEUL KIM;
SEONGSIK BANG;
SEONGEON PARK;
SEUNGYUN JEE;
JONGMIN SIM;
SU-JIN SHIN;
SEUNG SAM PAIK;
KISEOK JANG

Publication type:

Article

Cerebrospinal Fluid TAR DNA-Binding Protein 43 Combined with Tau Proteins as a Candidate Biomarker for Amyotrophic Lateral Sclerosis and Frontotemporal Dementia Spectrum Disorders.

Published in:

Dementia & Geriatric Cognitive Disorders, 2017, v. 44, n. 3/4, p. 144, doi. 10.1159/000478979

By:

Bourbouli, Mara;
Rentzos, Michael;
Bougea, anastasia;
Zouvelou, Vasiliki;
Constantinides, Vasilios C.;
Zaganas, Ioannis;
Evdokimidis, Ioannis;
Kapaki, Elisabeth;
Paraskevas, George P.

Publication type:

Article

Mice deficient in the C-terminal domain of TAR DNA-binding protein 43 develop age-dependent motor dysfunction associated with impaired Notch1−Akt signaling pathway.

Published in:

Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0776-5

By:

Nishino, Kohei;
Watanabe, Seiji;
Shijie, Jin;
Murata, Yuri;
Oiwa, Kotaro;
Komine, Okiru;
Endo, Fumito;
Tsuiji, Hitomi;
Abe, Manabu;
Sakimura, Kenji;
Mishra, Amit;
Yamanaka, Koji

Publication type:

Article

PLM-DBPs: enhancing plant DNA-binding protein prediction by integrating sequence-based and structure-aware protein language models Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf245

By:

Pokharel, Suresh;
Barasa, Kepha;
Pratyush, Pawel;
KC, Dukka B

Publication type:

Article

Benchmarking recent computational tools for DNA-binding protein identification.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 1, p. 1, doi. 10.1093/bib/bbae634

By:

Luo, Xizi;
Chi, Amadeus Song Yi;
Lin, Andre Huikai;
Ong, Tze Jet;
Wong, Limsoon;
Rahman, Chowdhury Rafeed

Publication type:

Article

PlDBPred: a novel computational model for discovery of DNA binding proteins in plants.

Published in:

Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac483

By:

Pradhan, Upendra Kumar;
Meher, Prabina Kumar;
Naha, Sanchita;
Pal, Soumen;
Gupta, Ajit;
Parsad, Rajender

Publication type:

Article

DNA-Binding Protein Dps Protects Escherichia coli Cells against Multiple Stresses during Desiccation.

Published in:

Biology (2079-7737), 2023, v. 12, n. 6, p. 853, doi. 10.3390/biology12060853

By:

Loiko, Nataliya;
Tereshkina, Ksenia;
Kovalenko, Vladislav;
Moiseenko, Andrey;
Tereshkin, Eduard;
Sokolova, Olga S.;
Krupyanskii, Yurii

Publication type:

Article

The effect of DNA-binding proteins on insertion sequence element transposition upstream of the bgl operon in Escherichia coli.

Published in:

Frontiers in Microbiology, 2024, p. 1, doi. 10.3389/fmicb.2024.1388522

By:

Kopkowski, Peter W.;
Zhongge Zhang;
Saier Jr., Milton H.

Publication type:

Article

Identification, Characterization, and Preliminary X-ray Diffraction Analysis of a Single Stranded DNA Binding Protein (LjSSB) from Psychrophilic Lacinutrix jangbogonensis PAMC 27137.

Published in:

Crystals (2073-4352), 2022, v. 12, n. 4, p. 538, doi. 10.3390/cryst12040538

By:

Choi, Woong;
Son, Jonghyeon;
Park, Aekyung;
Jin, Hongshi;
Shin, Seung Chul;
Lee, Jun Hyuck;
Kim, T. Doohun;
Kim, Han-Woo

Publication type:

Article

Increased levels of TAR DNA-binding protein 43 in the hippocampus of subjects with bipolar disorder: a postmortem study.

Published in:

Journal of Neural Transmission, 2022, v. 129, n. 1, p. 95, doi. 10.1007/s00702-021-02455-4

By:

Nascimento, Camila;
Nunes, Paula V.;
Kim, Helena K.;
Leite, Renata E. P.;
Rodriguez, Roberta D.;
De Oliveira, Katia Cristina;
Brentani, Helena P.;
Jacob-Filho, Wilson;
Nitrini, Ricardo;
Pasqualucci, Carlos A.;
Grinberg, Lea T.;
Suemoto, Claudia K.;
Lafer, Beny

Publication type:

Article

Single-stranded DNA binding protein 2 expression is associated with patient survival in hepatocellular carcinoma.

Published in:

2018

By:

Kim, Hyunsung;
Kim, Yeseul;
Chung, Yumin;
Abdul, Rehman;
Sim, Jongmin;
Ahn, Hyein;
Shin, Su-Jin;
Paik, Seung Sam;
Kim, Han Joon;
Jang, Kiseok;
Choi, Dongho

Publication type:

journal article