Works matching DE "VIRUS populations"

Results: 64

De novo haplotype reconstruction in viral quasispecies using paired-end read guided path finding.

Published in:

Bioinformatics, 2018, v. 34, n. 17, p. 2927, doi. 10.1093/bioinformatics/bty202

By:

Chen, Jiao;
Zhao, Yingchao;
Sun, Yanni

Publication type:

Article

nextflu: real-time tracking of seasonal influenza virus evolution in humans.

Published in:

Bioinformatics, 2015, v. 31, n. 21, p. 3546, doi. 10.1093/bioinformatics/btv381

By:

Neher, Richard A.;
Bedford, Trevor

Publication type:

Article

VIRAPOPS: a forward simulator dedicated to rapidly evolved viral populations.

Published in:

Bioinformatics, 2014, v. 30, n. 4, p. 578, doi. 10.1093/bioinformatics/btt724

By:

Petitjean, Michel;
Vanet, Anne

Publication type:

Article

Spalničky - reálná hrozba dnešní doby?

Published in:

Pediatrie pro Praxi, 2019, v. 20, n. 2, p. 82

By:

Kukrálová, Lenka;
Sedláček, Dalibor;
ŠvecováŠvecová, Mirka

Publication type:

Article

Burden of Co-Infection: A Cost Analysis of Human Immunodeficiency Virus in a Commercially Insured Hepatitis C Virus Population.

Published in:

Infectious Diseases & Therapy, 2019, v. 8, n. 2, p. 219, doi. 10.1007/s40121-019-0240-7

By:

Mattingly II, T. Joseph;
Pandit, Neha S.;
Onukwugha, Eberechukwu

Publication type:

Article

Positive selection and recombination shaped the large genetic differentiation of Beet black scorch virus population.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0215574

By:

Farzadfar, Shirin;
Pourrahim, Reza

Publication type:

Article

Genomic diversity and phylogeography of norovirus in China.

Published in:

BMC Medical Genomics, 2017, v. 10, p. 1, doi. 10.1186/s12920-017-0287-9

By:

Niu Qiao;
He Ren;
Lei Liu

Publication type:

Article

Complete genome sequence of rice virus A, a new member of the family Tombusviridae.

Published in:

Archives of Virology, 2017, v. 162, n. 10, p. 3247, doi. 10.1007/s00705-017-3472-4

By:

Zhao, Fumei;
Baek, Dasom;
Igori, Davaajargal;
Bae, Ju;
Kim, Sang-Min;
Ra, Ji-Eun;
Park, Ki;
Lee, Bong;
Moon, Jae

Publication type:

Article

Genetically distinct genogroup IV norovirus strains identified in wastewater.

Published in:

2016

By:

Kitajima, Masaaki;
Rachmadi, Andri;
Iker, Brandon;
Haramoto, Eiji;
Gerba, Charles

Publication type:

Report

Molecular variation and expansion of a rice black-streaked dwarf virus population based on analysis of segment 1 in Jining, China.

Published in:

Archives of Virology, 2016, v. 161, n. 12, p. 3435, doi. 10.1007/s00705-016-3052-z

By:

Zhou, Yu;
Meng, Qingchang;
Chen, Yanping;
Wu, Jirong;
Hao, Zhuanfang;
Wang, Zhenhua;
Zhang, Degui;
Li, Mingshun;
Yong, Hongjun;
Zhang, Shihuang;
Li, Xinhai;
Weng, Jianfeng

Publication type:

Article

Some like it hot: citrus tristeza virus strains react differently to elevated temperature.

Published in:

2016

By:

Cowell, S.;
Harper, S.;
Dawson, W.

Publication type:

Report

Population genomics of dengue virus serotype 4: insights into genetic structure and evolution.

Published in:

Archives of Virology, 2016, v. 161, n. 8, p. 2133, doi. 10.1007/s00705-016-2886-8

By:

Waman, Vaishali;
Kasibhatla, Sunitha;
Kale, Mohan;
Kulkarni-Kale, Urmila

Publication type:

Article

Evolutionary features of influenza A/H5N1 virus populations in Egypt: poultry and human health implications.

Published in:

2016

By:

Naguib, Mahmoud;
Abdelwhab, E.;
Harder, Timm

Publication type:

Report

Deep sequencing and analysis of small RNAs in sweet orange grafted on sour orange infected with two citrus tristeza virus isolates prevalent in Sicily.

Published in:

2015

By:

Licciardello, Grazia;
Scuderi, Giuseppe;
Ferraro, Rosario;
Giampetruzzi, Annalisa;
Russo, Marcella;
Lombardo, Alessandro;
Raspagliesi, Domenico;
Bar-Joseph, Moshe;
Catara, Antonino

Publication type:

Report

Genetic structure and molecular variability of potato virus M populations.

Published in:

Archives of Virology, 2014, v. 159, n. 8, p. 2081, doi. 10.1007/s00705-014-2037-z

By:

Tabasinejad, Fatemeh;
Jafarpour, Behrooz;
Zakiaghl, Mohammad;
Siampour, Majid;
Rouhani, Hamid;
Mehrvar, Mohsen

Publication type:

Article

Genetic structure of rice black-streaked dwarf virus populations in China.

Published in:

Archives of Virology, 2013, v. 158, n. 12, p. 2505, doi. 10.1007/s00705-013-1766-8

By:

Yin, Xiao;
Zheng, Fang-Qiang;
Tang, Wei;
Zhu, Qin-Qin;
Li, Xiang-Dong;
Zhang, Guang-Min;
Liu, Huan-Ting;
Liu, Bao-Shen

Publication type:

Article

DYNAMICAL MODEL OF IN-HOST HIV INFECTION: WITH DRUG THERAPY AND MULTI VIRAL STRAINS.

Published in:

Journal of Biological Systems, 2012, v. 20, n. 3, p. 303, doi. 10.1142/S021833901250012X

By:

SRIVASTAVA, PRASHANT K.;
BANERJEE, MALAY;
CHANDRA, PEEYUSH

Publication type:

Article

Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192565

By:

Alkhamis, Moh A.;
Gallardo, Carmina;
Jurado, Cristina;
Soler, Alejandro;
Arias, Marisa;
Sánchez-Vizcaíno, José M.

Publication type:

Article

Association between living environment and human oral viral ecology.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2013, v. 7, n. 9, p. 1710, doi. 10.1038/ismej.2013.63

By:

Robles-Sikisaka, Refugio;
Ly, Melissa;
Boehm, Tobias;
Naidu, Mayuri;
Salzman, Julia;
Pride, David T

Publication type:

Article

Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage.

Published in:

Algorithms for Molecular Biology, 2016, v. 11, p. 1, doi. 10.1186/s13015-016-0064-x

By:

Zukurov, Jean P.;
do Nascimento-Brito, Sieberth;
Volpini, Angela C.;
Oliveira, Guilherme C.;
Janini, Luiz Mario R.;
Antoneli, Fernando

Publication type:

Article

Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-4217-1

By:

Zhu, Yuan O.;
Aw, Pauline P. K.;
de Sessions, Paola Florez;
Shuzhen Hong;
Lee Xian See;
Hong, Lewis Z.;
Wilm, Andreas;
Chen Hao Li;
Hue, Stephane;
Seng Gee Lim;
Nagarajan, Niranjan;
Burkholder, William F.;
Hibberd, Martin

Publication type:

Article

Error correction and statistical analyses for intra-host comparisons of feline immunodeficiency virus diversity from high-throughput sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0607-z

By:

Yang Liu;
Chiaromonte, Francesca;
Ross, Howard;
Malhotra, Raunaq;
Elleder, Daniel;
Poss, Mary

Publication type:

Article

Evolution of mutualism from parasitism in experimental virus populations.

Published in:

Evolution, 2018, v. 72, n. 3, p. 707, doi. 10.1111/evo.13440

By:

Shapiro, Jason W.;
Turner, Paul E.

Publication type:

Article

Dynamics of molecular evolution in RNA virus populations depend on sudden versus gradual environmental change.

Published in:

Evolution, 2017, v. 71, n. 4, p. 872, doi. 10.1111/evo.13193

By:

Morley, Valerie J.;
Turner, Paul E.

Publication type:

Article

The population-level impact of HBV and its vaccination on HIV transmission dynamics.

Published in:

Mathematical Methods in the Applied Sciences, 2016, v. 39, n. 18, p. 5539, doi. 10.1002/mma.3941

By:

Ding, Pei;
Qiu, Zhipeng;
Li, Xuezhi

Publication type:

Article

The Utility of Data Transformation for Alignment, De Novo Assembly and Classification of Short Read Virus Sequences.

Published in:

Viruses (1999-4915), 2019, v. 11, n. 5, p. 394, doi. 10.3390/v11050394

By:

Tapinos, Avraam;
Constantinides, Bede;
Phan, My V. T.;
Kouchaki, Samaneh;
Cotten, Matthew;
Robertson, David L.

Publication type:

Article

Retroviral Vectors for Analysis of Viral Mutagenesis and Recombination.

Published in:

Viruses (1999-4915), 2014, v. 6, n. 9, p. 3612, doi. 10.3390/v6093612

By:

Rawson, Jonathan M. O.;
Mansky, Louis M.

Publication type:

Article

Enumeration of total virioplankton and isolation of specific cyanophages from selected aquatic ecosystems in Goa, India.

Published in:

Current Science (00113891), 2018, v. 115, n. 11, p. 2147, doi. 10.18520/cs/v115/i11/2147-2150

By:

Noronha, Judith Miriam;
Mulla, Amara Begum;
Gauns, Manguesh U.;
Ghadi, Sanjeev C.

Publication type:

Article

Diversity of Citrus tristeza virus populations in commercial grapefruit orchards in Southern Africa, determined using Illumina MiSeq technology.

Published in:

European Journal of Plant Pathology, 2017, v. 148, n. 2, p. 379, doi. 10.1007/s10658-016-1096-2

By:

Read, D.;
Pietersen, G.

Publication type:

Article

Link between the numbers of particles and variants founding new HIV-1 infections depends on the timing of transmission.

Published in:

Virus Evolution, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1093/ve/vey038

By:

Thompson, Robin N;
Wymant, Chris;
Spriggs, Rebecca A;
Raghwani, Jayna;
Fraser, Christophe;
Lythgoe, Katrina A

Publication type:

Article

The impact of HCV therapy in a high HIV-HCV prevalence population: A modeling study on people who inject drugs in Ho Chi Minh City, Vietnam.

Published in:

PLoS ONE, 2017, v. 12, n. 5, p. 1, doi. 10.1371/journal.pone.0177195

By:

Birger, Ruthie B.;
Le, Thuy;
Kouyos, Roger D.;
Grenfell, Bryan T.;
Hallett, Timothy B.

Publication type:

Article

Clinical Determinants of HIV-1B Between-Host Evolution and their Association with Drug Resistance in Pediatric Patients.

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167383

By:

Pagán, Israel;
Rojas, Patricia;
Ramos, José Tomás;
Holguín, África

Publication type:

Article

Viral Quasispecies Assembly via Maximal Clique Enumeration.

Published in:

PLoS Computational Biology, 2014, v. 10, n. 3, p. 1, doi. 10.1371/journal.pcbi.1003515

By:

Töpfer, Armin;
Marschall, Tobias;
Bull, Rowena A.;
Luciani, Fabio;
Schönhuth, Alexander;
Beerenwinkel, Niko

Publication type:

Article

Mathematical Models for Hantavirus Infection in Rodents.

Published in:

Bulletin of Mathematical Biology, 2006, v. 68, n. 3, p. 511, doi. 10.1007/s11538-005-9034-4

By:

Allen, Linda;
McCormack, Robert;
Jonsson, Colleen

Publication type:

Article

Xenotransplantation literature update, November/December 2017.

Published in:

Xenotransplantation, 2018, v. 25, n. 1, p. 1, doi. 10.1111/xen.12389

By:

Taylor, Travis R.;
Burlak, Christopher

Publication type:

Article

Highly diverse recombining populations of Vibrio cholerae and Vibrio parahaemolyticus in French Mediterranean coastal lagoons.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00708

By:

Esteves, Kévin;
Mosser, Thomas;
Aujoulat, Fabien;
Hervio-Heath, Dominique;
Monfort, Patrick;
Jumas-Bilak, Estelle;
Hahn, Martin W.;
Rochelle-Newall, Emma Jane

Publication type:

Article

Evidence for increased efficiency of virus transmission by populations of Mediterranean species of Bemisia tabaci with high Hamiltonella prevalence.

Published in:

Phytoparasitica, 2019, v. 47, n. 2, p. 293, doi. 10.1007/s12600-019-00729-y

By:

Bello, Vinicius Henrique;
Watanabe, Luís Fernando Maranho;
Santos, Beatriz Rosa;
Marubayashi, Julio Massaharu;
Yuki, Valdir Atsushi;
De Marchi, Bruno Rossitto;
Pavan, Marcelo Agenor;
Krause-Sakate, Renate

Publication type:

Article

Virus Entry by Endocytosis.

Published in:

Advances in Virology, 2013, p. 1, doi. 10.1155/2013/469538

By:

Nicola, Anthony V.;
Aguilar, Hector C.;
Mercer, Jason;
Ryckman, Brent;
Wiethoff, Christopher M.

Publication type:

Article

Comment on “Large Bottleneck Size in Cauliflower Mosaic Virus Populations during Host Plant Colonization” by Monsion et al. (2008).

Published in:

2016

By:

Thébaud, Gaël;
Michalakis, Yannis

Publication type:

Opinion

Developmental pathway for potent V1V2-directed HIV-neutralizing antibodies.

Published in:

Nature, 2014, v. 509, n. 7498, p. 55, doi. 10.1038/nature13036

By:

Doria-Rose, Nicole A.;
Schramm, Chaim A.;
Gorman, Jason;
Moore, Penny L.;
Bhiman, Jinal N.;
DeKosky, Brandon J.;
Ernandes, Michael J.;
Georgiev, Ivelin S.;
Kim, Helen J.;
Pancera, Marie;
Staupe, Ryan P.;
Altae-Tran, Han R.;
Bailer, Robert T.;
Crooks, Ema T.;
Cupo, Albert;
Druz, Aliaksandr;
Garrett, Nigel J.;
Hoi, Kam H.;
Kong, Rui;
Louder, Mark K.

Publication type:

Article

Mutational and fitness landscapes of an RNA virus revealed through population sequencing.

Published in:

Nature, 2014, v. 505, n. 7485, p. 686, doi. 10.1038/nature12861

By:

Acevedo, Ashley;
Brodsky, Leonid;
Andino, Raul

Publication type:

Article

SYSTEMIC APPROACH TO STUDYING VIRUSES OF BACTERIA FROM ANTARCTIC SOIL BIOTOPES.

Published in:

Bulletin of Taras Shevchenko National University of Kyiv / Vestnik Kievskogo Nacional'Nogo Universiteta Imeni Tarasa Ševčenko, 2013, v. 65, n. 3, p. 42

By:

Mas, O.;
Andriychuk, O.;
Polischuk, V.

Publication type:

Article

Recombination Enhances HIV-1 Envelope Diversity by Facilitating the Survival of Latent Genomic Fragments in the Plasma Virus Population.

Published in:

PLoS Computational Biology, 2015, v. 11, n. 12, p. 1, doi. 10.1371/journal.pcbi.1004625

By:

Immonen, Taina T.;
Conway, Jessica M.;
Romero-Severson, Ethan O.;
Perelson, Alan S.;
Leitner, Thomas

Publication type:

Article

Precise Photoremovable Perturbation of a Virus-Host Interaction.

Published in:

Angewandte Chemie, 2017, v. 129, n. 15, p. 4298, doi. 10.1002/ange.201700683

By:

Erickson, Sarah B.;
Mukherjee, Raja;
Kelemen, Rachel E.;
Wrobel, Chester J. J.;
Cao, Xiaofu;
Chatterjee, Abhishek

Publication type:

Article

Frequent Coinfection Reduces RNA Virus Population Genetic Diversity.

Published in:

Journal of Heredity, 2013, v. 104, n. 5, p. 704, doi. 10.1093/jhered/est038

By:

Dennehy, John J.;
Duffy, Siobain;
O’Keefe, Kara J.;
Edwards, Scott V.;
Turner, Paul E.

Publication type:

Article

A BRANCHING PROCESS FOR VIRUS SURVIVAL.

Published in:

Journal of Applied Probability, 2012, v. 49, n. 3, p. 888, doi. 10.1239/jap/1346955342

By:

Cox, J. Theodore;
Schinazi, Rinaldo B.

Publication type:

Article

Stochastic Modeling and Simulation of Viral Evolution.

Published in:

Bulletin of Mathematical Biology, 2019, v. 81, n. 4, p. 1031, doi. 10.1007/s11538-018-00550-4

By:

Fabreti, Luiza Guimarães;
Castro, Diogo;
Gorzoni, Bruno;
Janini, Luiz Mario Ramos;
Antoneli, Fernando

Publication type:

Article

Cucumber mosaic virus populations in Tunisian pepper crops are mainly composed of virus reassortants with resistance-breaking properties.

Published in:

Plant Pathology, 2013, v. 62, n. 6, p. 1415, doi. 10.1111/ppa.12032

By:

Ben Tamarzizt, H.;
Montarry, J.;
Girardot, G.;
Fakhfakh, H.;
Tepfer, M.;
Jacquemond, M.

Publication type:

Article

The population genetics of drug resistance evolution in natural populations of viral, bacterial and eukaryotic pathogens.

Published in:

Molecular Ecology, 2016, v. 25, n. 1, p. 42, doi. 10.1111/mec.13474

By:

Wilson, Benjamin A.;
Garud, Nandita R.;
Feder, Alison F.;
Assaf, Zoe J.;
Pennings, Pleuni S.

Publication type:

Article

On the relative roles of background selection and genetic hitchhiking in shaping human cytomegalovirus genetic diversity.

Published in:

Molecular Ecology, 2016, v. 25, n. 1, p. 403, doi. 10.1111/mec.13331

By:

Renzette, Nicholas;
Kowalik, Timothy F.;
Jensen, Jeffrey D.

Publication type:

Article