Works matching DE "VIRUS phylogeny"

Results: 385

Genome-wide analysis of synonymous codon usage in Huaiyangshan virus and other bunyaviruses.

Published in:

Journal of Basic Microbiology, 2015, v. 55, n. 12, p. 1374, doi. 10.1002/jobm.201500233

By:

Luo, Xuelian;
Liu, Qingzhen;
Xiong, Yanwen;
Ye, Changyun;
Jin, Dong;
Xu, Jianguo

Publication type:

Article

Searching for virus phylotypes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 561, doi. 10.1093/bioinformatics/btt010

By:

Chevenet, François;
Jung, Matthieu;
Peeters, Martine;
de Oliveira, Tulio;
Gascuel, Olivier

Publication type:

Article

Whole Genome Classification and Phylogenetic Analyses of Rotavirus B strains from the United States.

Published in:

Pathogens, 2018, v. 7, n. 2, p. 44, doi. 10.3390/pathogens7020044

By:

Shepherd, Frances K.;
Herrera-Ibata, Diana Maria;
Porter, Elizabeth;
Homwong, Nitipong;
Hesse, Richard;
Bai, Jianfa;
Marthaler, Douglas G.

Publication type:

Article

Identification and In Silico Characterization of a Genetically Distinct Avian Rotavirus D Capsid Gene, VP7.

Published in:

Pathogens, 2018, v. 7, n. 2, p. 37, doi. 10.3390/pathogens7020037

By:

Deol, Pallavi;
Kattoor, Jobin Jose;
Sircar, Shubhankar;
Batra, Munish;
Dhama, Kuldeep;
Malik, Yashpal Singh

Publication type:

Article

Species C Rotaviruses in Children with Diarrhea in India, 2010-2013: A Potentially Neglected Cause of Acute Gastroenteritis.

Published in:

Pathogens, 2018, v. 7, n. 1, p. 23, doi. 10.3390/pathogens7010023

By:

Bhat, Sudipta;
Kattoor, Jobin Jose;
Malik, Yashpal Singh;
Sircar, Shubhankar;
Deol, Pallavi;
Rawat, Vinita;
Rakholia, Ritu;
Ghosh, Souvik;
Vlasova, Anastasia N.;
Nadia, Touil;
Dhama, Kuldeep;
Kobayashi, Nobumichi

Publication type:

Article

Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2474, doi. 10.1093/gbe/evw175

By:

Harish, Ajith;
Abroi, Aare;
Gough, Julian;
Kurland, Charles

Publication type:

Article

Sub-genotype phylogeny of the non-G, non-P genes of genotype 2 Rotavirus A strains.

Published in:

PLoS ONE, 2019, v. 14, n. 5, p. 1, doi. 10.1371/journal.pone.0217422

By:

Agbemabiese, Chantal Ama;
Nakagomi, Toyoko;
Damanka, Susan Afua;
Dennis, Francis Ekow;
Lartey, Belinda Larteley;
Armah, George Enyimah;
Nakagomi, Osamu

Publication type:

Article

Phylogenetic analysis of hepatitis C virus among HIV/ HCV co-infected patients in Nigeria.

Published in:

PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0210724

By:

Shenge, Juliet A.;
Odaibo, Georgina N.;
Olaleye, David O.

Publication type:

Article

Phylogeographic analysis of human influenza A and B viruses in Myanmar, 2010–2015.

Published in:

PLoS ONE, 2019, v. 14, n. 01, p. 1, doi. 10.1371/journal.pone.0210550

By:

Htwe, Khin Thu Zar;
Dapat, Clyde;
Shobugawa, Yugo;
Odagiri, Takashi;
Hibino, Akinobu;
Kondo, Hiroki;
Yagami, Ren;
Saito, Takehiko;
Takemae, Nobuhiro;
Tamura, Tsutomu;
Watanabe, Hisami;
Kyaw, Yadanar;
Lin, Nay;
Myint, Yi Yi;
Tin, Htay Htay;
Thein, Win;
Kyaw, Latt Latt;
Soe, Pan Ei;
Naito, Makoto;
Zaraket, Hassan

Publication type:

Article

Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0208862

By:

Diaz-Lara, Alfredo;
Klaassen, Vicki;
Stevens, Kristian;
Sudarshana, Mysore R.;
Rowhani, Adib;
Maree, Hans J.;
Chooi, Kar Mun;
Blouin, Arnaud G.;
Habili, Nuredin;
Song, Yashu;
Aram, Kamyar;
Arnold, Kari;
Cooper, Monica L.;
Wunderlich, Lynn;
Battany, Mark C.;
Bettiga, Larry J.;
Smith, Rhonda J.;
Bester, Rachelle;
Xiao, Huogen;
Meng, Baozhong

Publication type:

Article

High genetic diversity of hepatitis delta virus in eastern Turkey.

Published in:

Journal of Infection in Developing Countries, 2014, v. 8, n. 1, p. 74, doi. 10.3855/jidc.3910

By:

Bulut, Yasemin;
Bahcecioglu, Ibrahim Halil;
Aygun, Cem;
Oner, Pinar Demirel;
Ozercan, Ibrahim;
Demirdag, Kutbeddin

Publication type:

Article

Isolation, Genome Phylogenetic Analysis and In vitro Rescue of a Newly Emerging Porcine Circovirus Type 2.

Published in:

Pakistan Veterinary Journal, 2012, v. 32, n. 2, p. 165

By:

Weijuan Zhu;
Xiaofeng Ren

Publication type:

Article

Direct sequencing and analysis of the genomes of newly emerging GII.17 norovirus strains in South China.

Published in:

Journal of Applied Microbiology, 2016, v. 120, n. 4, p. 1130, doi. 10.1111/jam.13052

By:

Xue, L.;
Cai, W.;
Wu, Q.;
Zhang, J.;
Guo, W.

Publication type:

Article

Evaluation of homogeneity and genetic stability of REOLYSIN (pelareorep) by complete genome sequencing of reovirus after large scale production.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 4, p. 1763, doi. 10.1007/s00253-013-5499-0

By:

Chakrabarty, Romit;
Tran, Hue;
Fortin, Yves;
Yu, Zhenbao;
Shen, Shi-Hsiang;
Kolman, John;
Onions, David;
Voyer, Robert;
Hagerman, Allison;
Serl, Sarah;
Kamen, Amine;
Thompson, Brad;
Coffey, Matt

Publication type:

Article

Complete genome sequence and phylogenetic analysis of spring viremia of carp virus isolated from leather carp (Cyprinus carpio nudus) in Korea in 2016.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2917, doi. 10.1007/s00705-018-3919-2

By:

Kim, Myoung-Jin;
Lee, Seongdo;
Godahewa, G. I.;
Hwang, Jee Youn;
Seo, Jung Soo;
Hwang, Seong Don;
Lee, Jehee

Publication type:

Article

Biological characterization of wild-bird-origin avian avulavirus 1 and efficacy of currently applied vaccines against potential infection in commercial poultry.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2743, doi. 10.1007/s00705-018-3916-5

By:

El Naggar, Rania F.;
Rohaim, Mohammed A.;
Bazid, AbdelHamid H.;
Ahmed, Kawkab A.;
Hussein, Hussein A.;
Munir, Muhammad

Publication type:

Article

Molecular characterization of an imported dengue virus serotype 4 isolate from Thailand.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2903, doi. 10.1007/s00705-018-3906-7

By:

Mo, Ling;
Shi, Jiandong;
Guo, Xiaofang;
Zeng, Zhaoping;
Hu, Ningzhu;
Sun, Jing;
Wu, Meini;
Zhou, Hongning;
Hu, Yunzhang

Publication type:

Article

Whole genome analysis of a novel neurotropic bovine astrovirus detected in a Japanese black steer with non-suppurative encephalomyelitis in Japan.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2805, doi. 10.1007/s00705-018-3898-3

By:

Hirashima, Yoshimasa;
Okada, Daisuke;
Shibata, Shoichi;
Yoshida, Shu;
Fujisono, Shoichiro;
Omatsu, Tsutomu;
Mizutani, Tetsuya;
Nagai, Makoto

Publication type:

Article

Phylogenetic analysis of porcine reproductive and respiratory syndrome virus isolates from Northern Ireland.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2799, doi. 10.1007/s00705-018-3886-7

By:

Smith, Natalie;
Power, Ultan F.;
McKillen, John

Publication type:

Article

Genetic diversity and phylogenetic analysis of Aleutian mink disease virus isolates in north-east China.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1241, doi. 10.1007/s00705-018-3754-5

By:

Leng, Xue;
Liu, Dongxu;
Li, Jianming;
Shi, Kun;
Zeng, Fanli;
Zong, Ying;
Liu, Yi;
Sun, Zhibo;
Zhang, Shanshan;
Liu, Yadong;
Du, Rui

Publication type:

Article

Molecular characterization and complete genome of a novel nepovirus from red clover.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1387, doi. 10.1007/s00705-018-3742-9

By:

Koloniuk, Igor;
Přibylová, Jaroslava;
Fránová, Jana

Publication type:

Article

The first complete genome sequence of narcissus latent virus from <italic>Narcissus</italic>.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1383, doi. 10.1007/s00705-018-3741-x

By:

Gao, Fangluan;
Shen, Jianguo;
Liao, Furong;
Cai, Wei;
Lin, Shuangqing;
Yang, Hongkai;
Chen, Shouling

Publication type:

Article

Grapevine virus I, a putative new vitivirus detected in co-infection with grapevine virus G in New Zealand.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1371, doi. 10.1007/s00705-018-3738-5

By:

Blouin, Arnaud G.;
Chooi, Kar Mun;
Warren, Ben;
Napier, Kathryn R.;
Barrero, Roberto A.;
MacDiarmid, Robin M.

Publication type:

Article

Genetic characterization and diversity of circulating influenza A/H1N1pdm09 viruses isolated in Jeddah, Saudi Arabia between 2014 and 2015.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1219, doi. 10.1007/s00705-018-3732-y

By:

Hashem, Anwar M.;
Azhar, Esam I.;
Shalhoub, Sarah;
Abujamel, Turki S.;
Othman, Norah A.;
Al Zahrani, Abdulwahab B.;
Abdullah, Hanan M.;
Al-Alawi, Maha M.;
Sindi, Anees A.

Publication type:

Article

Virological and pathological characterization of an avian H1N1 influenza A virus.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1153, doi. 10.1007/s00705-018-3730-0

By:

Koo, Bon-Sang;
Kim, Hye Kwon;
Song, Daesub;
Na, Woonsung;
Song, Min-Suk;
Kwon, Jin Jung;
Wong, Sook-San;
Noh, Ji Yeong;
Ahn, Min-Ju;
Kim, Doo-Jin;
Webby, Richard J;
Yoon, Sun-Woo;
Jeong, Dae Gwin

Publication type:

Article

Molecular analysis of barley stripe mosaic virus isolates differing in their biological properties and the development of reverse transcription loop-mediated isothermal amplification assays for their detection.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1163, doi. 10.1007/s00705-018-3725-x

By:

Zarzyńska-Nowak, A.;
Hasiów-Jaroszewska, B.;
Jeżewska, M.

Publication type:

Article

Genetic diversity of Orf virus isolated from sheep in Uruguay.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1285, doi. 10.1007/s00705-018-3717-x

By:

Olivero, Natalia;
Reolon, Eduardo;
Arbiza, Juan;
Berois, Mabel

Publication type:

Article

Genetic analysis of rotavirus G2P[4] strains in Pune, Western India: circulation of a novel reassortant bearing E6 NSP4 genotype.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1391, doi. 10.1007/s00705-018-3710-4

By:

Pradhan, Gauri N.;
Chitambar, Shobha D.

Publication type:

Article

Isolation and genomic characterization of a novel avian orthoreovirus strain in Korea, 2014.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1307, doi. 10.1007/s00705-017-3667-8

By:

Noh, Jin-Yong;
Lee, Dong-Hun;
Lim, Tae-Hyun;
Lee, Ji-ho;
Day, J. Michael;
Song, Chang-Seon

Publication type:

Article

Recombination analysis of coxsackievirus B5 genogroup C.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 539, doi. 10.1007/s00705-017-3608-6

By:

Shen, Hongxing

Publication type:

Article

Intra- and inter-serotypic recombinations in the 5΄ UTR-VP4 region of Echovirus 30 strains.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 365, doi. 10.1007/s00705-017-3600-1

By:

Kyriakopoulou, Zaharoula;
Amoutzias, Grigoris D.;
Dimitriou, Tilemachos G.;
Tsakogiannis, Dimitris;
Mossialos, Dimitris;
Markoulatos, Panayotis

Publication type:

Article

Genotypes and subgenotypes of hepatitis B virus circulating in an endemic area in Peru.

Published in:

2018

By:

Ramírez-Soto, Max Carlos;
Bracho, Maria Alma;
González-Candelas, Fernando;
Huichi-Atamari, Milagros

Publication type:

Report

Viral metagenomics of six bat species in close contact with humans in southern China.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 73, doi. 10.1007/s00705-017-3570-3

By:

Zheng, Xue-yan;
Qiu, Min;
Guan, Wei-jie;
Li, Jin-ming;
Chen, Shao-wei;
Cheng, Ming-ji;
Huo, Shu-ting;
Chen, Zhong;
Wu, Yi;
Jiang, Li-na;
Chen, Qing

Publication type:

Article

Complete genome sequence of datura leaf curl virus, a novel begomovirus infecting Datura innoxia in Sudan, related to begomoviruses causing tomato yellow leaf curl disease.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 273, doi. 10.1007/s00705-017-3574-z

By:

Mohammed, Heyam S.;
El Siddig, Marmar A.;
El Hussein, Adil A.;
Navas-Castillo, Jesús;
Fiallo-Olivé, Elvira

Publication type:

Article

Rotavirus A strains obtained from children with acute gastroenteritis in Mozambique, 2012-2013: G and P genotypes and phylogenetic analysis of VP7 and partial VP4 genes.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 153, doi. 10.1007/s00705-017-3575-y

By:

João, Eva Dora;
Strydom, Amy;
O’Neill, Hester G.;
Cuamba, Assa;
Cassocera, Marta;
Acácio, Sozinho;
Mandomando, Inácio;
Motanyane, Lithabiso;
Page, Nicola;
de Deus, Nilsa

Publication type:

Article

Complete genome sequence of maize yellow striate virus, a new cytorhabdovirus infecting maize and wheat crops in Argentina.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 291, doi. 10.1007/s00705-017-3579-7

By:

Maurino, Fernanda;
Dumón, Analía D.;
Llauger, Gabriela;
Alemandri, Vanina;
de Haro, Luis A.;
Mattio, M. Fernanda;
del Vas, Mariana;
Laguna, Irma Graciela;
Giménez Pecci, María de la Paz

Publication type:

Article

Identification of a novel vitivirus from grapevines in New Zealand.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 281, doi. 10.1007/s00705-017-3581-0

By:

Blouin, Arnaud G.;
Keenan, Sandi;
Napier, Kathryn R.;
Barrero, Roberto A.;
MacDiarmid, Robin M.

Publication type:

Article

Characterization and genome comparison of an Indian isolate of bidensovirus infecting the silkworm Bombyx mori.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 125, doi. 10.1007/s00705-017-3584-x

By:

Gupta, Tania;
Ito, Katsuhiko;
Kadono-Okuda, Keiko;
Murthy, Geetha N.;
Gowri, E. Vijaya;
Ponnuvel, Kangayam M.

Publication type:

Article

First identification of porcine parvovirus 7 in China.

Published in:

2018

By:

Xing, Xiulin;
Zhou, Han;
Tong, Ling;
Chen, Yao;
Sun, Yankuo;
Wang, Heng;
Zhang, Guihong

Publication type:

Report

Determination of the complete genomic sequence of grapevine virus H, a novel vitivirus infecting grapevine.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 277, doi. 10.1007/s00705-017-3587-7

By:

Candresse, Thierry;
Theil, Sébastien;
Faure, Chantal;
Marais, Armelle

Publication type:

Article

Complete genome sequence of a novel avian paramyxovirus isolated from wild birds in South Korea.

Published in:

2018

By:

Jeong, Jipseol;
Kim, Youngsik;
An, Injung;
Wang, Seung-Jun;
Kim, Yongkwan;
Lee, Hyun-Jeong;
Choi, Kang-Seuk;
Im, Se-Pyeong;
Min, Wongi;
Oem, Jae-Ku;
Jheong, Weonhwa

Publication type:

Report

Molecular analysis of the low-temperature Escherichia coli phage vB_EcoS_NBD2.

Published in:

Archives of Virology, 2018, v. 163, n. 1, p. 105, doi. 10.1007/s00705-017-3589-5

By:

Kaliniene, Laura;
Truncaitė, Lidija;
Šimoliūnas, Eugenijus;
Zajančkauskaitė, Aurelija;
Vilkaitytė, Monika;
Kaupinis, Algirdas;
Skapas, Martynas;
Meškys, Rolandas

Publication type:

Article

A novel strain of porcine deltacoronavirus in Vietnam.

Published in:

2018

By:

Le, Van Phan;
Song, Sok;
An, Byung-Hyun;
Park, Gyu-Nam;
Pham, Ngoc Thach;
Le, Dinh Quyen;
Nguyen, Van Tam;
Vu, Thi Thu Hang;
Kim, Ki-Sun;
Choe, SeEun;
An, Dong-Jun

Publication type:

Report

Sequence analysis of six full-length bean yellow mosaic virus genomes reveals phylogenetic diversity in India strains, suggesting subdivision of phylogenetic group-IV.

Published in:

2018

By:

Kaur, Charanjeet;
Raj, Rashmi;
Srivastava, Ashish;
Kumar, Susheel;
Raj, Shri Krishna

Publication type:

Report

Isolation and phylogenetic analysis of three feline calicivirus strains from domestic cats in Jilin Province, China.

Published in:

Archives of Virology, 2017, v. 162, n. 9, p. 2579, doi. 10.1007/s00705-017-3392-3

By:

Zhao, Yanli;
Chen, Xiaoqing;
Ying, Ying;
Wang, Kai;
Dong, Hongwei;
Gao, Chao;
Yang, Songtao;
Hu, Guixue

Publication type:

Article

Comparative analysis of cherry virus A genome sequences assembled from deep sequencing data.

Published in:

2017

By:

Kesanakurti, Prasad;
Belton, Mark;
Saeed, Hanaa;
Rast, Heidi;
Boyes, Ian;
Rott, Michael

Publication type:

Report

Molecular detection and genetic analysis of Akabane virus genogroup Ib in small ruminants in Turkey.

Published in:

2017

By:

Şevik, Murat

Publication type:

Report

Genome characterization of a novel megrivirus-related avian picornavirus from a carnivorous wild bird, western marsh harrier ( Circus aeruginosus).

Published in:

2017

By:

Boros, Ákos;
Pankovics, Péter;
Mátics, Róbert;
Adonyi, Ádám;
Bolba, Nóra;
Phan, Tung;
Delwart, Eric;
Reuter, Gábor

Publication type:

Report

Complete genome sequence of longan witches' broom-associated virus, a novel member of the family Potyviridae.

Published in:

Archives of Virology, 2017, v. 162, n. 9, p. 2885, doi. 10.1007/s00705-017-3405-2

By:

Seo, Jang-Kyun;
Kim, Mi-Kyeong;
Kwak, Hae-Ryun;
Kim, Jeong-Soo;
Choi, Hong-Soo

Publication type:

Article

Complete genome sequences of two novel autographiviruses infecting a bacterium from the Pseudomonas fluorescens group.

Published in:

Archives of Virology, 2017, v. 162, n. 9, p. 2907, doi. 10.1007/s00705-017-3419-9

By:

Nowicki, Grzegorz;
Walkowiak-Nowicka, Karolina;
Zemleduch-Barylska, Agata;
Mleczko, Anna;
Frąckowiak, Patryk;
Nowaczyk, Natalia;
Kozdrowska, Emilia;
Barylski, Jakub

Publication type:

Article