Works matching DE "VIRAL genomes"

Results: 4138

Iron-sulfur clusters in SARS-CoV-2 exoribonuclease and methyltransferase complexes: relevance for viral genome proofreading and capping.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-62832-5

By:

Maio, Nunziata;
Terranova, Umberto;
Li, Yan;
Bollinger Jr., J. Martin;
Krebs, Carsten;
Rouault, Tracey A.

Publication type:

Article

An Italian Single-Center Genomic Surveillance Study: Two-Year Analysis of SARS-CoV-2 Spike Protein Mutations.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 15, p. 7558, doi. 10.3390/ijms26157558

By:

Cecchetto, Riccardo;
Tonon, Emil;
Palmisano, Asia;
Lagni, Anna;
Diani, Erica;
Lotti, Virginia;
Mantoan, Marco;
Montesarchio, Livio;
Palladini, Francesca;
Turri, Giona;
Gibellini, Davide

Publication type:

Article

Clade-Specific Recombination and Mutations Define the Emergence of Porcine Epidemic Diarrhea Virus S-INDEL Lineages.

Published in:

Animals (2076-2615), 2025, v. 15, n. 15, p. 2312, doi. 10.3390/ani15152312

By:

Li, Yang-Yang;
Chen, Ke-Fan;
Fan, Chuan-Hao;
Li, Hai-Xia;
Zhen, Hui-Qiang;
Zhu, Ye-Qing;
Wang, Bin;
Huang, Yao-Wei;
Li, Gai-Ru

Publication type:

Article

Characterization of private mutations in the spike protein of SARS-CoV-2 correlates with viral prevalence.

Published in:

BMC Infectious Diseases, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12879-025-11414-3

By:

Wang, Shuo;
Hao, Ziyang;
Ding, Yuhan;
Rong, Heng;
Ning, Shuo;
Qiao, Qiao;
Zhu, Xiaojuan;
Wu, Tao;
Zhao, Kangchen;
Zhu, Liguo;
Li, Jingxin;
Ge, Yiyue;
Cui, Lunbiao

Publication type:

Article

Identification, functional analysis, and clinical applications of defective viral genomes.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1642520

By:

Yan, Xiaowei;
Pan, Yitong;
Li, Peiying;
Zhu, Li;
Yu, Jianhai;
Shen, Chenguang;
Zhang, Bao;
Zhao, Wei

Publication type:

Article

Hepatitis C viral infection among prisoners.

Published in:

Vojnosanitetski Pregled: Military Medical & Pharmaceutical Journal of Serbia, 2013, v. 70, n. 11, p. 1006, doi. 10.2298/VSP110526018K

By:

Kostić, Velimir;
Radović, Jelena;
Djordjević, Jovana;
Vujić, Stevan

Publication type:

Article

Treatment of chronic hepatitis C in injecting drug users -- A 5-year follow-up.

Published in:

Vojnosanitetski Pregled: Military Medical & Pharmaceutical Journal of Serbia, 2013, v. 70, n. 8, p. 723, doi. 10.2298/VSP110311050R

By:

Ruzić, Maja;
Fabri, Milotka;
Preveden, Tomislav;
Kiralj, Katarina;
Mikić, Sandra Stefan;
Vukadinov, Tatjana

Publication type:

Article

Assembly of infectious Kaposi's sarcoma-associated herpesvirus progeny requires formation of a pORF19 pentamer.

Published in:

PLoS Biology, 2021, v. 19, n. 11, p. 1, doi. 10.1371/journal.pbio.3001423

By:

Naniima, Peter;
Naimo, Eleonora;
Koch, Sandra;
Curth, Ute;
Alkharsah, Khaled R.;
Ströh, Luisa J.;
Binz, Anne;
Beneke, Jan-Marc;
Vollmer, Benjamin;
Böning, Heike;
Borst, Eva Maria;
Desai, Prashant;
Bohne, Jens;
Messerle, Martin;
Bauerfeind, Rudolf;
Legrand, Pierre;
Sodeik, Beate;
Schulz, Thomas F.;
Krey, Thomas

Publication type:

Article

SARS-CoV-2 nucleocapsid protein forms condensates with viral genomic RNA.

Published in:

PLoS Biology, 2021, v. 19, n. 10, p. 1, doi. 10.1371/journal.pbio.3001425

By:

Jack, Amanda;
Ferro, Luke S.;
Trnka, Michael J.;
Wehri, Eddie;
Nadgir, Amrut;
Nguyenla, Xammy;
Fox, Douglas;
Costa, Katelyn;
Stanley, Sarah;
Schaletzky, Julia;
Yildiz, Ahmet

Publication type:

Article

Identifying and prioritizing potential human-infecting viruses from their genome sequences.

Published in:

PLoS Biology, 2021, v. 19, n. 9, p. 1, doi. 10.1371/journal.pbio.3001390

By:

Mollentze, Nardus;
Babayan, Simon A.;
Streicker, Daniel G.

Publication type:

Article

The antiviral state has shaped the CpG composition of the vertebrate interferome to avoid self-targeting.

Published in:

PLoS Biology, 2021, v. 19, n. 9, p. 1, doi. 10.1371/journal.pbio.3001352

By:

Shaw, Andrew E.;
Rihn, Suzannah J.;
Mollentze, Nardus;
Wickenhagen, Arthur;
Stewart, Douglas G.;
Orton, Richard J.;
Kuchi, Srikeerthana;
Bakshi, Siddharth;
Collados, Mila Rodriguez;
Turnbull, Matthew L.;
Busby, Joseph;
Gu, Quan;
Smollett, Katherine;
Bamford, Connor G. G.;
Sugrue, Elena;
Johnson, Paul C. D.;
Da Silva, Ana Filipe;
Castello, Alfredo;
Streicker, Daniel G.;
Robertson, David L.

Publication type:

Article

The dinucleotide composition of the Zika virus genome is shaped by conflicting evolutionary pressures in mammalian hosts and mosquito vectors.

Published in:

PLoS Biology, 2021, v. 19, n. 4, p. 1, doi. 10.1371/journal.pbio.3001201

By:

Fros, Jelke J.;
Visser, Imke;
Tang, Bing;
Yan, Kexin;
Nakayama, Eri;
Visser, Tessa M.;
Koenraadt, Constantianus J. M.;
van Oers, Monique M.;
Pijlman, Gorben P.;
Suhrbier, Andreas;
Simmonds, Peter

Publication type:

Article

Nucleotide and codon usage biases involved in the evolution of African swine fever virus: A comparative genomics analysis.

Published in:

Journal of Basic Microbiology, 2023, v. 63, n. 5, p. 499, doi. 10.1002/jobm.202200624

By:

Pu, Feiyang;
Wang, Rui;
Yang, Xuanye;
Hu, Xinyan;
Wang, Jinqian;
Zhang, Lijuan;
Zhao, Yongqing;
Zhang, Derong;
Liu, Zewen;
Liu, Junlin

Publication type:

Article

Dispersion of synonymous codon usage patterns in hepatitis E virus genomes derived from various hosts.

Published in:

Journal of Basic Microbiology, 2022, v. 62, n. 8, p. 975, doi. 10.1002/jobm.202200072

By:

Wang, Xin;
Sun, Jing;
Zheng, Yueyan;
Xie, Fuqiang

Publication type:

Article

Identification of virus‐derived siRNAs and their targets in RBSDV‐infected rice by deep sequencing.

Published in:

Journal of Basic Microbiology, 2018, v. 58, n. 3, p. 227, doi. 10.1002/jobm.201700325

By:

Lan, Ying;
Li, Yanwu;
E, Zhiguo;
Sun, Feng;
Du, Linlin;
Xu, Qiufang;
Zhou, Tong;
Zhou, Yijun;
Fan, Yongjian

Publication type:

Article

Genome-wide analysis of synonymous codon usage in Huaiyangshan virus and other bunyaviruses.

Published in:

Journal of Basic Microbiology, 2015, v. 55, n. 12, p. 1374, doi. 10.1002/jobm.201500233

By:

Luo, Xuelian;
Liu, Qingzhen;
Xiong, Yanwen;
Ye, Changyun;
Jin, Dong;
Xu, Jianguo

Publication type:

Article

Quantifying Ostreid Herpesvirus (OsHV-1) Genome Copies and Expression during Transmission.

Published in:

Microbial Ecology, 2012, v. 63, n. 3, p. 596, doi. 10.1007/s00248-011-9937-1

By:

Burge, Colleen;
Friedman, Carolyn

Publication type:

Article

Differences in the prognosis of HPV16-positive patients with squamous cell carcinoma of head and neck according to viral load and expression of P16.

Published in:

Journal of Cancer Research & Clinical Oncology, 2018, v. 144, n. 1, p. 63, doi. 10.1007/s00432-017-2531-2

By:

Biesaga, Beata;
Mucha-Małecka, Anna;
Janecka-Widła, Anna;
Kołodziej-Rzepa, Marta;
Szostek, Sława;
Słonina, Dorota;
Kowalczyk, Aleksandra;
Halaszka, Krzysztof;
Przewoźnik, Marcin

Publication type:

Article

Current Progress in the Development of Hepatitis B Virus Capsid Assembly Modulators: Chemical Structure, Mode-of-Action and Efficacy.

Published in:

Molecules, 2021, v. 26, n. 24, p. 7420, doi. 10.3390/molecules26247420

By:

Kim, Hyejin;
Ko, Chunkyu;
Lee, Joo-Youn;
Kim, Meehyein

Publication type:

Article

Inactivation Activities of Ozonated Water, Slightly Acidic Electrolyzed Water and Ethanol against SARS-CoV-2.

Published in:

Molecules, 2021, v. 26, n. 18, p. 5465, doi. 10.3390/molecules26185465

By:

Takeda, Yohei;
Jamsransuren, Dulamjav;
Makita, Yoshimasa;
Kaneko, Akihiro;
Matsuda, Sachiko;
Ogawa, Haruko;
Oh, Hourei

Publication type:

Article

In Vitro and In Silico Anti-Arboviral Activities of Dihalogenated Phenolic Derivates of L-Tyrosine.

Published in:

Molecules, 2021, v. 26, n. 11, p. 3430, doi. 10.3390/molecules26113430

By:

Loaiza-Cano, Vanessa;
Monsalve-Escudero, Laura Milena;
Restrepo, Manuel Pastrana;
Quintero-Gil, Diana Carolina;
Pulido Muñoz, Sergio Andres;
Galeano, Elkin;
Zapata, Wildeman;
Martinez-Gutierrez, Marlen

Publication type:

Article

DNA Libraries for the Construction of Phage Libraries: Statistical and Structural Requirements and Synthetic.

Published in:

Molecules, 2011, v. 16, n. 2, p. 1625, doi. 10.3390/molecules16021625

By:

Lindner, Thomas;
Kolmar, Harald;
Haberkorn, Uwe;
Mier, Walter

Publication type:

Article

Comparative analysis of American Dengue virus type 1 full-genome sequences.

Published in:

Virus Genes, 2010, v. 40, n. 1, p. 60, doi. 10.1007/s11262-009-0428-0

By:

S. Carvalho;
D. Martin;
L. Oliveira;
B. Ribeiro

Publication type:

Article

Genetic characterization of 2006â2008 isolates of Chikungunya virus from Kerala, South India, by whole genome sequence analysis.

Published in:

Virus Genes, 2010, v. 40, n. 1, p. 14, doi. 10.1007/s11262-009-0411-9

By:

E. Sreekumar;
Aneesh Issac;
Sajith Nair;
Ramkumar Hariharan;
M. Janki;
D. Arathy;
R. Regu;
Thomas Mathew;
M. Anoop;
K. Niyas;
M. Pillai

Publication type:

Article

Genetic diversity and evidence for recent modular recombination in Hawaiian Citrus tristeza virus.

Published in:

Virus Genes, 2010, v. 40, n. 1, p. 111, doi. 10.1007/s11262-009-0409-3

By:

Michael Melzer;
Wayne Borth;
Diane Sether;
Stephen Ferreira;
Dennis Gonsalves;
John Hu

Publication type:

Article

Tensaw virus genome sequence and its relation to other Bunyaviridae.

Published in:

Virus Genes, 2009, v. 39, n. 3, p. 309, doi. 10.1007/s11262-009-0400-z

By:

Stacey Watts;
Alejandra Garcia-Maruniak;
James Maruniak

Publication type:

Article

A double-stranded RNA as the genome of a potential virus infecting Vicia faba.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 126, doi. 10.1007/s11262-009-0362-1

By:

Weixia Liu

Publication type:

Article

Marekâs disease virus phosphorylated polypeptide pp38 alters transcription rates of mitochondrial electron transport and oxidative phosphorylation genes.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 102

By:

Priscilla OâConnell;
Karel Schat

Publication type:

Article

Newcastle disease outbreaks in Kazakhstan and Kyrgyzstan during 1998, 2000, 2001, 2003, 2004, and 2005 were caused by viruses of the genotypes VIIb and VIId.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 94

By:

Andrey Bogoyavlenskiy;
Vladimir Berezin;
Alexey Prilipov;
Eugeniy Usachev;
Olga Lyapina;
Ilya Korotetskiy;
Irina Zaitceva;
Saule Asanova;
Aydyn Kydyrmanov;
Klara Daulbaeva;
Larisa Shakhvorostova;
Marat Sayatov;
Daniel King

Publication type:

Article

Sequencing and computational analysis of complete genome sequences of Citrus yellow mosaic badna virus from acid lime and pummelo.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 137, doi. 10.1007/s11262-009-0367-9

By:

Basanta Borah;
A. Johnson;
D. Sai Gopal;
Indranil Dasgupta

Publication type:

Article

Entire genome characterization of human papillomavirus type 16 from infected Thai women with different cytological findings.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 30

By:

Pairoj Junyangdikul;
Sunchai Payungporn;
Jira Chansaenroj;
Pichet Sampathanukul;
Damrong Tresukosol;
Wichai Termrungruanglert;
Apiradee Theamboonlers;
Yong Poovorawan

Publication type:

Article

Genomic characterization of swine caliciviruses representing a new genus of Caliciviridae.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 66, doi. 10.1007/s11262-009-0360-3

By:

Yvan L’Homme;
Raphaël Sansregret;
Étienne Plante-Fortier;
Anne-Marie Lamontagne;
Mourad Ouardani;
Geneviève Lacroix;
Carole Simard

Publication type:

Article

Transgenic expression of coat protein gene of Rice tungro bacilliform virus in rice reduces the accumulation of viral DNA in inoculated plants.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 113, doi. 10.1007/s11262-009-0359-9

By:

Uma Ganesan;
Sarabjeet Suri;
Shanmugam Rajasubramaniam;
Manchikatla Rajam;
Indranil Dasgupta

Publication type:

Article

Translational control of the subgenomic RNAs of severe acute respiratory syndrome coronavirus.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 10, doi. 10.1007/s11262-009-0357-y

By:

Yaling Yang;
Hao Wang;
Min Ke;
Deyin Guo

Publication type:

Article

Molecular characterization of glycoprotein genes and phylogenetic analysis of two swine paramyxoviruses isolated from United States.

Published in:

Virus Genes, 2009, v. 39, n. 1, p. 53, doi. 10.1007/s11262-009-0353-2

By:

Dan Qiao;
Bruce Janke;
Subbiah Elankumaran

Publication type:

Article

Morphology and genome of Euproctis pseudoconspersa nucleopolyhedrovirus.

Published in:

Virus Genes, 2009, v. 38, n. 3, p. 495, doi. 10.1007/s11262-009-0355-0

By:

Xu-Dong Tang;
Qiang Xiao;
Xiu-Cui Ma;
Zeng-Rong Zhu;
Chuan-Xi Zhang

Publication type:

Article

Mal de Río Cuarto virus (MRCV) genomic segment S3 codes for the major core capsid protein.

Published in:

Virus Genes, 2009, v. 38, n. 3, p. 455

By:

Sara Maldonado;
Mariana del Vas

Publication type:

Article

Complete genomic sequence analyses of Turnip mosaic virus basal-BR isolates from China.

Published in:

Virus Genes, 2009, v. 38, n. 3, p. 421

By:

Jia Chen;
Yun-Hua Shao;
Xiang-Dong Li

Publication type:

Article

Genome organization and phylogenetic relationship of Pineapple mealybug wilt associated virus-3 with family Closteroviridae members.

Published in:

Virus Genes, 2009, v. 38, n. 3, p. 414, doi. 10.1007/s11262-009-0334-5

By:

Diane Sether;
Michael Melzer;
Wayne Borth;
John Hu

Publication type:

Article

Multiple alternative splicing to exons II and III of viral interleukin-8 (vIL-8) in the Marek’s disease virus genome: the importance of vIL-8 exon I.

Published in:

Virus Genes, 2007, v. 34, n. 1, p. 9, doi. 10.1007/s11262-006-0004-9

By:

Keith Jarosinski;
Karel Schat

Publication type:

Article

Genetic variability of bovine viral diarrhoea virus subtypes at 3?-nontranslated region.

Published in:

Virus Genes, 2007, v. 34, n. 1, p. 31

By:

Š. Vil?ek;
Mária Kolesárová;
Anna Jacková

Publication type:

Article

Analysis of HCV Isolates Among the Li Ethnic in Hainan Island of South China Reveals Their HCV-6 Unique Evolution and a New Subtype.

Published in:

Cellular Physiology & Biochemistry (Karger AG), 2018, v. 50, n. 5, p. 1832, doi. 10.1159/000494863

By:

Tao Wu;
Zengbo Xing;
Manqiong Yuan;
Jun Ge;
Guosheng Yuan;
Kaijian Liang;
Biao Wu;
Furong Xiao;
Chunhua Li;
Yuanping Zhou;
Feng Lin;
Ling Lu

Publication type:

Article

PanTools v3: functional annotation, classification and phylogenomics.

Published in:

Bioinformatics, 2022, v. 38, n. 18, p. 4403, doi. 10.1093/bioinformatics/btac506

By:

Jonkheer, Eef M;
Workum, Dirk-Jan M van;
Anari, Siavash Sheikhizadeh;
Brankovics, Balázs;
Haan, Jorn R de;
Berke, Lidija;
Lee, Theo A J van der;
Ridder, Dick de;
Smit, Sandra

Publication type:

Article

gofasta: command-line utilities for genomic epidemiology research.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4033, doi. 10.1093/bioinformatics/btac424

By:

Jackson, Ben

Publication type:

Article

effect of genome graph expressiveness on the discrepancy between genome graph distance and string set distance.

Published in:

Bioinformatics, 2022, v. 38, p. i404, doi. 10.1093/bioinformatics/btac264

By:

Qiu, Yutong;
Kingsford, Carl

Publication type:

Article

Phage–bacterial contig association prediction with a convolutional neural network.

Published in:

Bioinformatics, 2022, v. 38, p. i45, doi. 10.1093/bioinformatics/btac239

By:

Tang, Tianqi;
Hou, Shengwei;
Fuhrman, Jed A;
Sun, Fengzhu

Publication type:

Article

atlas of human viruses provides new insights into diversity and tissue tropism of human viruses.

Published in:

Bioinformatics, 2022, v. 38, n. 11, p. 3087, doi. 10.1093/bioinformatics/btac275

By:

Ye, Sifan;
Lu, Congyu;
Qiu, Ye;
Zheng, Heping;
Ge, Xingyi;
Wu, Aiping;
Xia, Zanxian;
Jiang, Taijiao;
Zhu, Haizhen;
Peng, Yousong

Publication type:

Article

HAMdetector: a Bayesian regression model that integrates information to detect HLA-associated mutations.

Published in:

Bioinformatics, 2022, v. 38, n. 9, p. 2428, doi. 10.1093/bioinformatics/btac134

By:

Habermann, Daniel;
Kharimzadeh, Hadi;
Walker, Andreas;
Li, Yang;
Yang, Rongge;
Kaiser, Rolf;
Brumme, Zabrina L;
Timm, Jörg;
Roggendorf, Michael;
Hoffmann, Daniel

Publication type:

Article

PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1447, doi. 10.1093/bioinformatics/btab837

By:

Zielezinski, Andrzej;
Deorowicz, Sebastian;
Gudyś, Adam

Publication type:

Article

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.

Published in:

Bioinformatics, 2022, v. 38, n. 3, p. 856, doi. 10.1093/bioinformatics/btab725

By:

Marini, Simone;
Mavian, Carla;
Riva, Alberto;
Prosperi, Mattia;
Salemi, Marco;
Magalis, Brittany Rife

Publication type:

Article