Works matching DE "VIRAL evolution"

Results: 431

Pleomorphic viruses establish stable relationship with marine hyperthermophilic archaea.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2024, v. 18, n. 1, p. 1, doi. 10.1093/ismejo/wrae008

By:

Baquero, Diana P;
Bignon, Eduardo A;
Krupovic, Mart

Publication type:

Article

Viral evolution: Variation in the gut virome.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 9, p. 596, doi. 10.1038/nrmicro3092

By:

Hofer, Ursula

Publication type:

Article

Viral evolution: Pandemic flu can go from bad to worse.

Published in:

Nature Reviews Microbiology, 2011, v. 9, n. 1, p. 4, doi. 10.1038/nrmicro2502

By:

Sanchez, Cesar

Publication type:

Article

Does the evolution of viral polymerases reflect the origin and evolution of viruses?

Published in:

2009

By:

Krupovič, Mart;
Bamford, Dennis H.

Publication type:

Letter

The complexity of the virus world.

Published in:

2009

By:

Koonin, Eugene V.;
Wolf, Yuri I.;
Nagasaki, Keizo;
Dolja, Valerian V.

Publication type:

Letter

Virus evolution: how far does the double β-barrel viral lineage extend?

Published in:

Nature Reviews Microbiology, 2008, v. 6, n. 12, p. 941, doi. 10.1038/nrmicro2033

By:

Krupovič, Mart;
Bamford, Dennis H.

Publication type:

Article

Viral evolution: As the crow dies.

Published in:

Nature Reviews Microbiology, 2007, v. 5, n. 10, p. 746, doi. 10.1038/nrmicro1758

By:

Mullard, Asher

Publication type:

Article

Hot crenarchaeal viruses reveal deep evolutionary connections.

Published in:

Nature Reviews Microbiology, 2006, v. 4, n. 7, p. 520, doi. 10.1038/nrmicro1444

By:

Ortmann, Alice C.;
Wiedenheft, Blake;
Douglas, Trevor;
Young, Mark

Publication type:

Article

The RNA interference—virus interplay: tools of nature for gene modulation, morphogenesis, evolution and a possible mean for aflatoxin control.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 83, n. 4, p. 611, doi. 10.1007/s00253-009-2007-7

By:

Schmidt, F. R.

Publication type:

Article

Searching for virus phylotypes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 561, doi. 10.1093/bioinformatics/btt010

By:

Chevenet, François;
Jung, Matthieu;
Peeters, Martine;
de Oliveira, Tulio;
Gascuel, Olivier

Publication type:

Article

Sliding MinPD: building evolutionary networks of serial samples via an automated recombination detection approach.

Published in:

Bioinformatics, 2007, v. 23, n. 22, p. 2993, doi. 10.1093/bioinformatics/btm413

By:

Patricia Buendia;
Giri Narasimhan

Publication type:

Article

Immune evasion by Kaposi's sarcoma-associated herpesvirus.

Published in:

Nature Reviews Immunology, 2007, v. 7, n. 5, p. 391, doi. 10.1038/nri2076

By:

Coscoy, Laurent

Publication type:

Article

Tuning inflammation and immunity by chemokine sequestration: decoys and more.

Published in:

Nature Reviews Immunology, 2006, v. 6, n. 12, p. 907, doi. 10.1038/nri1964

By:

Mantovani, Alberto;
Bonecchi, Raffaella;
Locati, Massimo

Publication type:

Article

Natural selection and infectious disease in human populations.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 6, p. 379, doi. 10.1038/nrg3734

By:

Karlsson, Elinor K.;
Kwiatkowski, Dominic P.;
Sabeti, Pardis C.

Publication type:

Article

ADVANCED APPROACHES TO IDENTIFICATION OF VIRUSES INFECTING OF WILD HERBACEOUS PLANTS.

Published in:

Bulletin of Taras Shevchenko National University of Kyiv / Vestnik Kievskogo Nacional'Nogo Universiteta Imeni Tarasa Ševčenko, 2013, v. 65, n. 3, p. 13

By:

Baidaliuk, A.;
Budzanivska, I.

Publication type:

Article

Compositional Constraint Is the Key Force in Shaping Codon Usage Bias in Hemagglutinin Gene in H1N1 Subtype of Influenza A Virus.

Published in:

International Journal of Genomics, 2014, p. 1, doi. 10.1155/2014/349139

By:

Deka, Himangshu;
Chakraborty, Supriyo

Publication type:

Article

Open Reading Frame Phylogenetic Analysis on the Cloud.

Published in:

International Journal of Genomics, 2013, p. 1, doi. 10.1155/2013/614923

By:

Che-Lun Hung;
Chun-Yuan Lin

Publication type:

Article

Multi-chain Fudan-CCDC model for COVID-19—a revisit to Singapore's case.

Published in:

Quantitative Biology, 2020, v. 8, n. 4, p. 325, doi. 10.1007/s40484-020-0224-3

By:

Pan, Hanshuang;
Shao, Nian;
Yan, Yue;
Luo, Xinyue;
Wang, Shufen;
Ye, Ling;
Cheng, Jin;
Chen, Wenbin

Publication type:

Article

Evaluation of viral heterogeneity using next-generation sequencing, end-point limiting-dilution and mass spectrometry.

Published in:

In Silico Biology, 2012, v. 11, n. 5/6, p. 183, doi. 10.3233/isb-2012-0453

By:

Dimitrova, Z.;
Campo, D.S.;
Ramachandran, S.;
Vaughan, G.;
Ganova-Raeva, L.;
Lin, Y.;
Forbi, J.C.;
Xia, G.;
Skums, P.;
Pearlman, B.;
Khudyakov, Y.

Publication type:

Article

Coordinated evolution of the Hepatitis B Virus Polymerase.

Published in:

In Silico Biology, 2012, v. 11, n. 5/6, p. 175, doi. 10.3233/isb-2012-0452

By:

Campo, D.S.;
Dimitrova, Z.;
Lara, J.;
Purdy, M.;
Thai, H.;
Ramachandran, S.;
Ganova-Raeva, L.;
Zhai, X.;
Forbi, J.C.;
Teo, C.G.;
Khudyakov, Y.

Publication type:

Article

Dynamic changes in host-virus interactions associated with colony founding and social environment in fire ant queens ( Solenopsis invicta).

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 1, p. 233, doi. 10.1002/ece3.1843

By:

Manfredini, Fabio;
Shoemaker, DeWayne;
Grozinger, Christina M.

Publication type:

Article

Evolution of RNA virus in spatially structured heterogeneous environments.

Published in:

Journal of Evolutionary Biology, 2003, v. 16, n. 3, p. 456, doi. 10.1046/j.1420-9101.2003.00547.x

By:

Cuevas, J. M.;
Moya, A.;
Elena, S. F.

Publication type:

Article

Causal agent of sharka disease: historical perspective and current status of Plum pox virus strains.

Published in:

EPPO Bulletin, 2006, v. 36, n. 2, p. 239, doi. 10.1111/j.1365-2338.2006.00980.x

By:

Candresse, T.;
Cambra, M.

Publication type:

Article

RNA Structure—A Neglected Puppet Master for the Evolution of Virus and Host Immunity.

Published in:

Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.02097

By:

Smyth, Redmond P.;
Negroni, Matteo;
Lever, Andrew M.;
Mak, Johnson;
Kenyon, Julia C.

Publication type:

Article

Genetic variations of the Hemagglutinin gene of Pandemic Influenza A (H1N1) viruses in Assam, India during 2016.

Published in:

3 Biotech, 2018, v. 8, n. 10, p. 1, doi. 10.1007/s13205-018-1427-4

By:

Sarmah, Kimmi;
Borkakoty, Biswajyoti;
Sarma, Kishore;
Hazarika, Rahul;
Das, Palash Kumar;
Jakharia, Aniruddha;
Das, Mandakini;
Biswas, Dipankar

Publication type:

Article

Comparative paleovirological analysis of crustaceans identifies multiple widespread viral groups.

Published in:

Mobile DNA, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13100-015-0047-3

By:

Metegnier, Gabriel;
Becking, Thomas;
Chebbi, Mohamed Amine;
Giraud, Isabelle;
Moumen, Bouziane;
Schaack, Sarah;
Cordaux, Richard;
Gilbert, Clément

Publication type:

Article

The Origin of the Virus.

Published in:

2013

By:

Brown, Colin

Publication type:

Letter

Whole-Genome Analysis of Domestic Chicken Selection Lines Suggests Segregating Variation in ERV Makeups.

Published in:

Genes, 2019, v. 10, n. 2, p. 162, doi. 10.3390/genes10020162

By:

Pettersson, Mats E.;
Jern, Patric

Publication type:

Article

Archaeal Viruses from High-Temperature Environments.

Published in:

Genes, 2018, v. 9, n. 3, p. 128, doi. 10.3390/genes9030128

By:

Munson-McGee, Jacob H.;
Snyder, Jamie C.;
Young, Mark J.

Publication type:

Article

Metabolic Genes within Cyanophage Genomes: Implications for Diversity and Evolution.

Published in:

Genes, 2016, v. 7, n. 10, p. 80, doi. 10.3390/genes7100080

By:

E-Bin Gao;
Youhua Huang;
Degang Ning

Publication type:

Article

Capturing virus evolution by proteomic bioinformatics: Hunting for characteristic mutations in the hepatitis E virus genome.

Published in:

2018

By:

Harms, Dominik;
Wang, Bo;
Papp, C. Patrick;
Bock, C.-Thomas

Publication type:

Editorial

Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209292

By:

Muñoz-Medina, José Esteban;
Garcia-Knight, Miguel Antonio;
Sanchez-Flores, Alejandro;
Monroy-Muñoz, Irma Eloísa;
Grande, Ricardo;
Esbjörnsson, Joakim;
Santacruz-Tinoco, Clara Esperanza;
González-Bonilla, César Raúl

Publication type:

Article

Phylodynamics and evolutionary epidemiology of African swine fever p72-CVR genes in Eurasia and Africa.

Published in:

PLoS ONE, 2018, v. 13, n. 2, p. 1, doi. 10.1371/journal.pone.0192565

By:

Alkhamis, Moh A.;
Gallardo, Carmina;
Jurado, Cristina;
Soler, Alejandro;
Arias, Marisa;
Sánchez-Vizcaíno, José M.

Publication type:

Article

Viral nanoparticles as tools for intravital vascular imaging.

Published in:

Nature Medicine, 2006, v. 12, n. 3, p. 354, doi. 10.1038/nm1368

By:

Lewis, John D.;
Destito, Giuseppe;
Zijlstra, Andries;
Gonzalez, Maria J.;
Quigley, James P.;
Manchester, Marianne;
Stuhlmann, Heidi

Publication type:

Article

Predicting evolutionary change in the influenza A virus.

Published in:

Nature Medicine, 2002, v. 8, n. 6, p. 562, doi. 10.1038/nm0602-562

By:

Ferguson, Neil M.;
Anderson, Roy M.

Publication type:

Article

Replication and compartmentalization of HIV-1 in kidney epithelium of patients with HIV-associated nephropathy.

Published in:

Nature Medicine, 2002, v. 8, n. 5, p. 522, doi. 10.1038/nm0502-522

By:

Marras, Daniele;
Bruggeman, Leslie A.;
Gao, Feng;
Tanji, Nozomu;
Mansukhani, Mahesh M.;
Cara, Andrea;
Ross, Michael D.;
Gusella, G Luca;
Benson, Gary;
D'Agati, Vivette D.;
Hahn, Beatrice H.;
Klotman, Mary E.;
Klotman, Paul E.

Publication type:

Article

A systems analysis of mutational effects in HIV-1 protease and reverse transcriptase.

Published in:

Nature Genetics, 2011, v. 43, n. 5, p. 487, doi. 10.1038/ng.795

By:

Hinkley, Trevor;
Martins, João;
Chappey, Colombe;
Haddad, Mojgan;
Stawiski, Eric;
Whitcomb, Jeannette M.;
Petropoulos, Christos J.;
Bonhoeffer, Sebastian

Publication type:

Article

Ultra-deep mutant spectrum profiling: improving sequencing accuracy using overlapping read pairs.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-96

By:

Chen-Harris, Haiyin;
Borucki, Monica K.;
Torres, Clinton;
Slezak, Tom R.;
Allen, Jonathan E.

Publication type:

Article

Widespread Reassortment Shapes the Evolution and Epidemiology of Bluetongue Virus following European Invasion.

Published in:

PLoS Pathogens, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.ppat.1005056

By:

Nomikou, Kyriaki;
Hughes, Joseph;
Wash, Rachael;
Kellam, Paul;
Breard, Emmanuel;
Zientara, Stéphan;
Palmarini, Massimo;
Biek, Roman;
Mertens, Peter

Publication type:

Article

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin.

Published in:

PLoS Pathogens, 2015, v. 11, n. 5, p. 1, doi. 10.1371/journal.ppat.1004940

By:

Meyer, Austin G.;
Wilke, Claus O.

Publication type:

Article

Host-Specific Parvovirus Evolution in Nature Is Recapitulated by In Vitro Adaptation to Different Carnivore Species.

Published in:

PLoS Pathogens, 2014, v. 10, n. 11, p. 1, doi. 10.1371/journal.ppat.1004475

By:

Allison, Andrew B.;
Kohler, Dennis J.;
Ortega, Alicia;
Hoover, Elizabeth A.;
Grove, Daniel M.;
Holmes, Edward C.;
Parrish, Colin R.

Publication type:

Article

Sequential Bottlenecks Drive Viral Evolution in Early Acute Hepatitis C Virus Infection.

Published in:

PLoS Pathogens, 2011, v. 7, n. 9, p. 1, doi. 10.1371/journal.ppat.1002243

By:

Bull, Rowena A.;
Luciani, Fabio;
McElroy, Kerensa;
Gaudieri, Silvana;
Pham, Son T.;
Chopra, Abha;
Cameron, Barbara;
Maher, Lisa;
Dore, Gregory J.;
White, Peter A.;
Lloyd, Andrew R.

Publication type:

Article

One Is Enough: In Vivo Effective Population Size Is Dose-Dependent for a Plant RNA Virus.

Published in:

PLoS Pathogens, 2011, v. 7, n. 7, p. 1, doi. 10.1371/journal.ppat.1002122

By:

Zwart, Mark P.;
Daròs, José-Antonio;
Elena, Santiago F.

Publication type:

Article

Evolutionary Analysis of Inter-Farm Transmission Dynamics in a Highly Pathogenic Avian Influenza Epidemic.

Published in:

PLoS Pathogens, 2011, v. 7, n. 6, p. 1, doi. 10.1371/journal.ppat.1002094

By:

Bataille, Arnaud;
van der Meer, Frank;
Stegeman, Arjan;
Koch, Guus

Publication type:

Article

Distribution of the Phenotypic Effects of Random Homologous Recombination between Two Virus Species.

Published in:

PLoS Pathogens, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.ppat.1002028

By:

Vuillaume, Florence;
Thébaud, Gaël;
Urbino, Cica;
Forfert, Nadège;
Granier, Martine;
Froissart, Rémy;
Blanc, Stéphane;
Peterschmitt, Michel

Publication type:

Article

Modelling the Evolution and Spread of HIV Immune Escape Mutants.

Published in:: PLoS Pathogens, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.ppat.1001196
Publication type:: Article

The Combined Effect of Environmental and Host Factors on the Emergence of Viral RNA Recombinants.

Published in:: PLoS Pathogens, 2010, v. 6, n. 10, p. 1, doi. 10.1371/journal.ppat.1001156
Publication type:: Article

Generation of Neutralizing Antibodies and Divergence of SIVmac239 in Cynomolgus Macaques Following Short- Term Early Antiretroviral Therapy.

Published in:: PLoS Pathogens, 2010, v. 6, n. 9, p. 1, doi. 10.1371/journal.ppat.1001084
Publication type:: Article

HIV Evolution in Early Infection: Selection Pressures, Patterns of Insertion and Deletion, and the Impact of APOBEC.

Published in:

PLoS Pathogens, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.ppat.1000414

By:

Wood, Natasha;
Bhattacharya, Tanmoy;
Keele, Brandon F.;
Giorgi, Elena;
Liu, Michael;
Gaschen, Brian;
Daniels, Marcus;
Ferrari, Guido;
Haynes, Barton F.;
McMichael, Andrew;
Shaw, George M.;
Hahn, Beatrice H.;
Korber, Bette;
Seoighe, Cathal

Publication type:

Article

Theme and Variations in the Evolutionary Pathways to Virulence of an RNA Plant Virus Species.

Published in:

PLoS Pathogens, 2007, v. 3, n. 11, p. e180, doi. 10.1371/journal.ppat.0030180

By:

Pinel-Galzi, Agnés;
Rakotomalala, Mbolarinosy;
Sangu, Emmanuel;
Sorho, Fatogoma;
Kanyeka, Zakaria;
Traoré, Oumar;
Sérémé, Drissa;
Poulicard, Nils;
Rabenantoandro, Yvonne;
Séré, Yacouba;
Konaté, Gnissa;
Ghesquière, Alain;
Hébrard, Eugénie;
Fargette, Denis

Publication type:

Article