Works matching DE "VIRAL evolution"

Results: 432

Searching for virus phylotypes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 561, doi. 10.1093/bioinformatics/btt010

By:

Chevenet, François;
Jung, Matthieu;
Peeters, Martine;
de Oliveira, Tulio;
Gascuel, Olivier

Publication type:

Article

Natural selection and infectious disease in human populations.

Published in:

Nature Reviews Genetics, 2014, v. 15, n. 6, p. 379, doi. 10.1038/nrg3734

By:

Karlsson, Elinor K.;
Kwiatkowski, Dominic P.;
Sabeti, Pardis C.

Publication type:

Article

Endogenous viruses: insights into viral evolution and impact on host biology.

Published in:

Nature Reviews Genetics, 2012, v. 13, n. 4, p. 283, doi. 10.1038/nrg3199

By:

Feschotte, Cédric;
Gilbert, Clément

Publication type:

Article

Evolution and Divergence of H3N8 Equine Influenza Viruses Circulating in the United Kingdom from 2013 to 2015.

Published in:

Pathogens, 2017, v. 6, n. 1, p. 6, doi. 10.3390/pathogens6010006

By:

Rash, Adam;
Morton, Rachel;
Woodward, Alana;
Maes, Olivia;
McCauley, John;
Bryant, Neil;
Elton, Debra

Publication type:

Article

Ecology, physiology and genetics of a phycodnavirus infecting the noxious bloom-forming raphidophyte Heterosigma akashiwo.

Published in:

Fisheries Science, 2008, v. 74, n. 4, p. 701, doi. 10.1111/j.1444-2906.2008.01580.x

By:

Tomaru, Yuji;
Shirai, Yoko;
Nagasaki, Keizo

Publication type:

Article

Low level of HIV-1 evolution after transmission from mother to child.

Published in:

Scientific Reports, 2014, p. 1, doi. 10.1038/srep05079

By:

Gijsbers, Esther F.;
van Nuenen, Ad C.;
de la Peňa, Alba Torrents;
Bowles, Emma J.;
Stewart-Jones, Guillaume B.;
Schuitemaker, Hanneke;
Kootstra, Neeltje A.

Publication type:

Article

Evolution of RNA virus in spatially structured heterogeneous environments.

Published in:

Journal of Evolutionary Biology, 2003, v. 16, n. 3, p. 456, doi. 10.1046/j.1420-9101.2003.00547.x

By:

Cuevas, J. M.;
Moya, A.;
Elena, S. F.

Publication type:

Article

Different responses to Spo0A-mediated suppression of the related Bacillus subtilis phages Nf and φ29.

Published in:

Environmental Microbiology, 2009, v. 11, n. 5, p. 1137, doi. 10.1111/j.1462-2920.2008.01845.x

By:

Castilla-Llorente, Virginia;
Salas, Margarita;
Meijer, Wilfried J. J.

Publication type:

Article

Phylogenetic study on structural elements of HIV-1 poly(A) region. 1. PolyA and DSE hairpins.

Published in:

Biopolymers & Cell, 2013, v. 29, n. 6, p. 454, doi. 10.7124/bc.00083F

By:

Zarudnaya, M. I.;
Potyahaylo, A. L.;
Kolomiets, I. M.;
Hovorun, D. M.

Publication type:

Article

Ancient Endogenous Pararetroviruses in Oryza Genomes Provide Insights into the Heterogeneity of Viral Gene Macroevolution.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 10, p. 2686, doi. 10.1093/gbe/evy207

By:

Chen, Sunlu;
Saito, Nozomi;
Encabo, Jaymee R;
Yamada, Kanae;
Choi, Il-Ryong;
Kishima, Yuji

Publication type:

Article

Engineered Functional Redundancy Relaxes Selective Constraints upon Endogenous Genes in Viral RNA Genomes.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 7, p. 1823, doi. 10.1093/gbe/evy141

By:

Ambrós, Silvia;
de la Iglesia, Francisca;
Rosario, Sttefany M;
Butković, Anamarija;
Elena, Santiago F

Publication type:

Article

Ancient Evolution of Mammarenaviruses: Adaptation via Changes in the L Protein and No Evidence for Host-Virus Codivergence.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 3, p. 863, doi. 10.1093/gbe/evy050

By:

Forni, Diego;
Pontremoli, Chiara;
Pozzoli, Uberto;
Clerici, Mario;
Cagliani, Rachele;
Sironi, Manuela

Publication type:

Article

Nonreplicative RNA Recombination of an Animal Plus-Strand RNA Virus in the Absence of Efficient Translation of Viral Proteins.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 4, p. 817, doi. 10.1093/gbe/evx046

By:

Büning, Maximiliane Kleine;
Meyer, Denise;
Austermann-Busch, Sophia;
Roman-Sosa, Gleyder;
Rümenapf, Tillmann;
Becher, Paul

Publication type:

Article

2b or Not 2b: Experimental Evolution of Functional Exogenous Sequences in a Plant RNA Virus.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 2, p. 297, doi. 10.1093/gbe/evw300

By:

Willemsen, Anouk;
Zwart, Mark P.;
Ambrós, Silvia;
Carrasco, José L.;
Elena, Santiago F.

Publication type:

Article

Comparison of a Modern and Fossil Pithovirus Reveals Its Genetic Conservation and Evolution.

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2333, doi. 10.1093/gbe/evw153

By:

Levasseur, Anthony;
Andreani, Julien;
Delerce, Jeremy;
Khalil, Jacques Bou;
Robert, Catherine;
La Scola, Bernard;
Raoult, Didier

Publication type:

Article

Did Viruses Evolve As a Distinct Supergroup from Common Ancestors of Cells?

Published in:

Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2474, doi. 10.1093/gbe/evw175

By:

Harish, Ajith;
Abroi, Aare;
Gough, Julian;
Kurland, Charles

Publication type:

Article

High-Resolution Mapping of Evolutionary Trajectories in a Phage.

Published in:

Genome Biology & Evolution, 2009, v. 1, p. 294, doi. 10.1093/gbe/evp029

By:

Dickins, Benjamin;
Nekrutenko, Anton

Publication type:

Article

The evolution of a super-swarm of foot-and-mouth disease virus in cattle.

Published in:

PLoS ONE, 2019, v. 14, n. 4, p. 1, doi. 10.1371/journal.pone.0210847

By:

Arzt, Jonathan;
Fish, Ian;
Pauszek, Steven J.;
Johnson, Shannon L.;
Chain, Patrick S.;
Rai, Devendra K.;
Rieder, Elizabeth;
Goldberg, Tony L.;
Rodriguez, Luis L.;
Stenfeldt, Carolina

Publication type:

Article

Evolutionary analysis of the Chikungunya virus epidemic in Mexico reveals intra-host mutational hotspots in the E1 protein.

Published in:

PLoS ONE, 2018, v. 13, n. 12, p. 1, doi. 10.1371/journal.pone.0209292

By:

Muñoz-Medina, José Esteban;
Garcia-Knight, Miguel Antonio;
Sanchez-Flores, Alejandro;
Monroy-Muñoz, Irma Eloísa;
Grande, Ricardo;
Esbjörnsson, Joakim;
Santacruz-Tinoco, Clara Esperanza;
González-Bonilla, César Raúl

Publication type:

Article

MOLECULAR EPIDEMIOLOGY OF CANINE PARVOVIRUS TYPE 2A AND 2B AMONG SHELTER DOGS - THE NEW RECOMBINATION IN VIRUS.

Published in:

Taiwan Veterinary Journal, 2017, v. 43, n. 1, p. 47, doi. 10.1142/S1682648515500341

By:

Sung, Ming-Hua;
Chen, Tsung-Ming;
Yang, Yi-Chen;
Lu, Yuan-Ting;
Hsu, Man-Yu;
Liang, Michelle;
Chen, Kuan-Hua;
Chao, Day-Yu;
Lan, Yu-Ching

Publication type:

Article

Lessons learnt from the global outbreak of a Darwinian masterpiece: Virus influenza A (H1N1) 2009.

Published in:

Southern African Journal of Epidemiology & Infection, 2011, v. 26, n. 4, p. 191, doi. 10.1080/10158782.2011.11441449

By:

Oxford, J. S.

Publication type:

Article

The RNA interference—virus interplay: tools of nature for gene modulation, morphogenesis, evolution and a possible mean for aflatoxin control.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 83, n. 4, p. 611, doi. 10.1007/s00253-009-2007-7

By:

Schmidt, F. R.

Publication type:

Article

Genomic characterization of a novel recombinant porcine astrovirus isolated in northeastern China.

Published in:

Archives of Virology, 2019, v. 164, n. 5, p. 1469, doi. 10.1007/s00705-019-04162-8

By:

Zhao, Chengxue;
Chen, Chen;
Li, Ying;
Dong, Shuren;
Tan, Kun;
Tian, Yuhui;
Zhang, Lilin;
Huang, Jinhai;
Zhang, Lei

Publication type:

Article

Genome polarity of RNA viruses reflects the different evolutionary pressures shaping codon usage.

Published in:

Archives of Virology, 2018, v. 163, n. 10, p. 2883, doi. 10.1007/s00705-018-3930-7

By:

Phakaratsakul, Supinya;
Sirihongthong, Thanyaporn;
Boonarkart, Chompunuch;
Suptawiwat, Ornpreya;
Auewarakul, Prasert

Publication type:

Article

Isobavachalcone inhibits post-entry stages of the porcine reproductive and respiratory syndrome virus life cycle.

Published in:

Archives of Virology, 2018, v. 163, n. 5, p. 1263, doi. 10.1007/s00705-018-3755-4

By:

Wang, Hai-Ming;
Liu, Tian-Xin;
Wang, Tong-Yun;
Wang, Gang;
Liu, Yong-Gang;
Liu, Si-Guo;
Tang, Yan-Dong;
Cai, Xue-Hui

Publication type:

Article

Genetic characterization of low-pathogenic avian influenza viruses isolated on the Izumi plain in Japan: possible association of dynamic movements of wild birds with AIV evolution.

Published in:

Archives of Virology, 2018, v. 163, n. 4, p. 911, doi. 10.1007/s00705-017-3698-1

By:

Nakagawa, Hiroko;
Okuya, Kosuke;
Kawabata, Toshiko;
Matsuu, Aya;
Takase, Kozo;
Kuwahara, Masakazu;
Toda, Shigehisa;
Ozawa, Makoto

Publication type:

Article

Diversity and evolution analysis of glycoprotein GP85 from avian leukosis virus subgroup J isolates from chickens of different genetic backgrounds during 1989-2016: Coexistence of five extremely different clusters.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 377, doi. 10.1007/s00705-017-3601-0

By:

Wang, Peikun;
Lin, Lulu;
Li, Haijuan;
Yang, Yongli;
Huang, Teng;
Wei, Ping

Publication type:

Article

Intra- and inter-serotypic recombinations in the 5΄ UTR-VP4 region of Echovirus 30 strains.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 365, doi. 10.1007/s00705-017-3600-1

By:

Kyriakopoulou, Zaharoula;
Amoutzias, Grigoris D.;
Dimitriou, Tilemachos G.;
Tsakogiannis, Dimitris;
Mossialos, Dimitris;
Markoulatos, Panayotis

Publication type:

Article

Next-generation sequencing of five new avian paramyxoviruses 8 isolates from Kazakhstan indicates a low genetic evolution rate over four decades.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 331, doi. 10.1007/s00705-017-3593-9

By:

Fereidouni, Sasan;
Jenckel, M.;
Seidalina, A.;
Karamendin, K.;
Beer, M.;
Starick, E.;
Asanova, S.;
Kasymbekov, E.;
Sayatov, M.;
Kydyrmanov, A.

Publication type:

Article

Molecular evolution and epidemiological links study of Newcastle disease virus isolates from 1995 to 2016 in Iran.

Published in:

Archives of Virology, 2017, v. 162, n. 12, p. 3727, doi. 10.1007/s00705-017-3536-5

By:

Mayahi, Vafa;
Esmaelizad, Majid

Publication type:

Article

Genetic diversity and evolutionary characteristics of type 2 porcine reproductive and respiratory syndrome virus in southeastern China from 2009 to 2014.

Published in:

Archives of Virology, 2017, v. 162, n. 9, p. 2603, doi. 10.1007/s00705-017-3393-2

By:

Liu, Jiankui;
Zhou, Xia;
Zhai, Junqiong;
Li, Bing;
Wei, Chunhua;
Dai, Ailing;
Yang, Xiaoyan;
Luo, Manlin

Publication type:

Article

Isolation, identification and evolution analysis of a novel subgroup of avian leukosis virus isolated from a local Chinese yellow broiler in South China.

Published in:

Archives of Virology, 2016, v. 161, n. 10, p. 2717, doi. 10.1007/s00705-016-2965-x

By:

Li, Xinjian;
Lin, Wencheng;
Chang, Shuang;
Zhao, Peng;
Zhang, Xinheng;
Liu, Yang;
Chen, Weiguo;
Li, Baohong;
Shu, Dingming;
Zhang, Huanmin;
Chen, Feng;
Xie, Qingmei

Publication type:

Article

Genomic characterization of influenza A (H7N9) viruses isolated in Shenzhen, Southern China, during the second epidemic wave.

Published in:

Archives of Virology, 2016, v. 161, n. 8, p. 2117, doi. 10.1007/s00705-016-2872-1

By:

Fang, Shisong;
Wang, Xin;
Dong, Fangyuan;
Jin, Tao;
Liu, Guang;
Lu, Xing;
Peng, Bo;
Wu, Weihua;
Liu, Hui;
Kong, Dongfeng;
Tang, Xiujuan;
Qin, Yanmin;
Mei, Shujiang;
Xie, Xu;
He, Jianfan;
Ma, Hanwu;
Zhang, Renli;
Cheng, Jinquan

Publication type:

Article

Population genomics of dengue virus serotype 4: insights into genetic structure and evolution.

Published in:

Archives of Virology, 2016, v. 161, n. 8, p. 2133, doi. 10.1007/s00705-016-2886-8

By:

Waman, Vaishali;
Kasibhatla, Sunitha;
Kale, Mohan;
Kulkarni-Kale, Urmila

Publication type:

Article

Genomic characterization and evolution analysis of a mutant reovirus isolated from grass carp in Anhui.

Published in:

Archives of Virology, 2016, v. 161, n. 5, p. 1385, doi. 10.1007/s00705-016-2754-6

By:

Wu, Minglin;
Cui, Kai;
Li, Haiyang;
He, Jixiang;
Chen, Honglian;
Jiang, Yangyang;
Ren, Jun

Publication type:

Article

Detection of novel polyomaviruses in fruit bats in Indonesia.

Published in:

Archives of Virology, 2015, v. 160, n. 4, p. 1075, doi. 10.1007/s00705-015-2349-7

By:

Kobayashi, Shintaro;
Sasaki, Michihito;
Nakao, Ryo;
Setiyono, Agus;
Handharyani, Ekowati;
Orba, Yasuko;
Rahmadani, Ibnu;
Taha, Siswatiana;
Adiani, Sri;
Subangkit, Mawar;
Nakamura, Ichiro;
Kimura, Takashi;
Sawa, Hirofumi

Publication type:

Article

Molecular epidemiology and evolution of influenza A and B viruses during winter 2013-2014 in Beijing, China.

Published in:

Archives of Virology, 2015, v. 160, n. 4, p. 1083, doi. 10.1007/s00705-015-2362-x

By:

Fang, Qiongxuan;
Gao, Yan;
Chen, Meifang;
Guo, Xiaolin;
Yang, Xia;
Wei, Lai

Publication type:

Article

Identification of a novel orthohepadnavirus in pomona roundleaf bats in China.

Published in:

2015

By:

He, Biao;
Zhang, Fuqiang;
Xia, Lele;
Hu, Tingsong;
Chen, Gang;
Qiu, Wei;
Fan, Quanshui;
Feng, Ye;
Guo, Huancheng;
Tu, Changchun

Publication type:

Report

Identification and complete genome analysis of kobuvirus in faecal samples of European roller ( Coracias garrulus): for the first time in a bird.

Published in:

2015

By:

Pankovics, Péter;
Boros, Ákos;
Kiss, Tamás;
Reuter, Gábor

Publication type:

Report

Recombination in truncated genome sequences of porcine circovirus type 2.

Published in:

Archives of Virology, 2015, v. 160, n. 1, p. 371, doi. 10.1007/s00705-014-2242-9

By:

Wen, Libin;
Wang, Fengzhi;
He, Kongwang;
Li, Bin;
Wang, Xiaomin;
Guo, Rongli;
Xie, Jianping

Publication type:

Article

Phylogenetic analysis of New Zealand tomato spotted wilt virus isolates suggests likely incursion history scenarios and mechanisms for population evolution.

Published in:

Archives of Virology, 2014, v. 159, n. 5, p. 993, doi. 10.1007/s00705-013-1909-y

By:

Timmerman-Vaughan, Gail;
Lister, Ros;
Cooper, Rebecca;
Tang, Joe

Publication type:

Article

Dynamics and evolution of porcine reproductive and respiratory syndrome virus (PRRSV) ORF5 following modified live PRRSV vaccination in a PRRSV-infected herd.

Published in:

Archives of Virology, 2014, v. 159, n. 1, p. 17, doi. 10.1007/s00705-013-1781-9

By:

Nilubol, Dachrit;
Tripipat, Thitima;
Hoonsuwan, Tawatchai;
Tipsombatboon, Pavita;
Piriyapongsa, Jittima

Publication type:

Article

Genetic structure of rice black-streaked dwarf virus populations in China.

Published in:

Archives of Virology, 2013, v. 158, n. 12, p. 2505, doi. 10.1007/s00705-013-1766-8

By:

Yin, Xiao;
Zheng, Fang-Qiang;
Tang, Wei;
Zhu, Qin-Qin;
Li, Xiang-Dong;
Zhang, Guang-Min;
Liu, Huan-Ting;
Liu, Bao-Shen

Publication type:

Article

Epidemiological survey of porcine epidemic diarrhea virus in swine farms in Shanghai, China.

Published in:

Archives of Virology, 2013, v. 158, n. 11, p. 2227, doi. 10.1007/s00705-013-1722-7

By:

Ge, Fei-Fei;
Yang, De-Quan;
Ju, Hou-Bin;
Wang, Jian;
Liu, Jian;
Liu, Pei-Hong;
Zhou, Jin-Ping

Publication type:

Article

Experimental infection of non-human primates with avian influenza virus (H9N2).

Published in:

Archives of Virology, 2013, v. 158, n. 10, p. 2127, doi. 10.1007/s00705-013-1721-8

By:

Zhang, Kun;
Xu, Weiwei;
Zhang, Zhaowei;
Wang, Tiecheng;
Sang, Xiaoyu;
Cheng, Kaihui;
Yu, Zhijun;
Zheng, Xuexing;
Wang, Huale;
Zhao, Yongkun;
Huang, Geng;
Yang, Songtao;
Qin, Chuan;
Gao, Yuwei;
Xia, Xianzhu

Publication type:

Article

What contemporary viruses tell us about evolution: a personal view.

Published in:

Archives of Virology, 2013, v. 158, n. 9, p. 1833, doi. 10.1007/s00705-013-1679-6

By:

Moelling, Karin

Publication type:

Article

Continuous evolution of avian infectious bronchitis virus resulting in different variants co-circulating in southern China.

Published in:

2013

By:

Li, Meng;
Mo, Mei-Lan;
Huang, Bai-Cheng;
Fan, Wen-Sheng;
Wei, Zheng-Ji;
Wei, Tian-Chao;
Li, Kang-Ran;
Wei, Ping

Publication type:

Report

Whole genomic analysis reveals the co-evolutionary phylodynamics of Korean G9P[8] human rotavirus strains.

Published in:

2013

By:

Than, Van;
Baek, In;
Kim, Wonyong

Publication type:

Report

Genome sequence of a chimpanzee herpesvirus and its relation to other primate alphaherpesviruses.

Published in:

Archives of Virology, 2013, v. 158, n. 8, p. 1825, doi. 10.1007/s00705-013-1666-y

By:

Severini, Alberto;
Tyler, Shaun;
Peters, Geoffrey;
Black, Darla;
Eberle, R.

Publication type:

Article

Analysis of synonymous codon usage patterns in torque teno sus virus 1 (TTSuV1).

Published in:

Archives of Virology, 2013, v. 158, n. 1, p. 145, doi. 10.1007/s00705-012-1480-y

By:

Zhang, Zhicheng;
Dai, Wei;
Wang, Yang;
Lu, Chengping;
Fan, Hongjie

Publication type:

Article