Works matching DE "THERMOCOCCUS kodakaraensis"

Results: 58

Synthetic metabolic engineering-a novel, simple technology for designing a chimeric metabolic pathway.

Published in:

Microbial Cell Factories, 2012, v. 11, n. 1, p. 120, doi. 10.1186/1475-2859-11-120

By:

Xiaoting Ye;
Honda, Kohsuke;
Sakai, Takaaki;
Okano, Kenji;
Omasa, Takeshi;
Hirota, Ryuichi;
Kuroda, Akio;
Ohtake, Hisao

Publication type:

Article

Structural and functional characterisation of the methionine adenosyltransferase from Thermococcus kodakarensis.

Published in:

BMC Structural Biology, 2013, v. 13, p. 1, doi. 10.1186/1472-6807-13-22

By:

Schlesier, Julia;
Siegrist, Jutta;
Gerhardt, Stefan;
Erb, Annette;
Blaesi, Simone;
Richte, Michael;
Einsle, Oliver;
Andexer, Jennifer N.

Publication type:

Article

Crystal structure of a substrate-free aspartate transporter.

Published in:

Nature Structural & Molecular Biology, 2013, v. 20, n. 10, p. 1224, doi. 10.1038/nsmb.2663

By:

Jensen, Sonja;
Guskov, Albert;
Rempel, Stephan;
Hänelt, Inga;
Slotboom, Dirk Jan

Publication type:

Article

Replication protein A complex in Thermococcus kodakarensis interacts with DNA polymerases and helps their effective strand synthesis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2019, v. 83, n. 4, p. 695, doi. 10.1080/09168451.2018.1559722

By:

Nagata, Mariko;
Ishino, Sonoko;
Yamagami, Takeshi;
Ishino, Yoshizumi

Publication type:

Article

Identification of a novel acetylated form of branched-chain polyamine from a hyperthermophilic archaeon Thermococcus kodakarensis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2017, v. 81, n. 9, p. 1845, doi. 10.1080/09168451.2017.1345616

By:

Hidese, Ryota;
Im, Ki-Hwan;
Kobayashi, Masaki;
Niitsu, Masaru;
Furuchi, Takemitsu;
Fujiwara, Shinsuke

Publication type:

Article

On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis.

Published in:

Bioscience, Biotechnology & Biochemistry, 2015, v. 79, n. 6, p. 952, doi. 10.1080/09168451.2014.1003130

By:

Kotaro Suematsu;
Toshifumi Ueda;
Takashi Nakashima;
Yoshimitsu Kakuta;
Makoto Kimura

Publication type:

Article

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase.

Published in:

Extremophiles, 2019, v. 23, n. 1, p. 161, doi. 10.1007/s00792-018-1070-3

By:

Takashima, Natsuki;
Ishino, Sonoko;
Oki, Keisuke;
Takafuji, Mika;
Yamagami, Takeshi;
Matsuo, Ryotaro;
Mayanagi, Kouta;
Ishino, Yoshizumi

Publication type:

Article

A series of new E. coli-Thermococcus shuttle vectors compatible with previously existing vectors.

Published in:

Extremophiles, 2018, v. 22, n. 4, p. 591, doi. 10.1007/s00792-018-1019-6

By:

Catchpole, Ryan;
Gorlas, Aurore;
Oberto, Jacques;
Forterre, Patrick

Publication type:

Article

Phytoene production utilizing the isoprenoid biosynthesis capacity of <italic>Thermococcus kodakarensis</italic>.

Published in:

Extremophiles, 2018, v. 22, n. 2, p. 301, doi. 10.1007/s00792-018-0998-7

By:

Fuke, Tsubasa;
Sato, Takaaki;
Jha, Savyasachee;
Tansengco, Myra L.;
Atomi, Haruyuki

Publication type:

Article

Gene regulation of two ferredoxin:NADP oxidoreductases by the redox-responsive regulator SurR in Thermococcus kodakarensis.

Published in:

Extremophiles, 2017, v. 21, n. 5, p. 903, doi. 10.1007/s00792-017-0952-0

By:

Hidese, Ryota;
Yamashita, Keita;
Kawazuma, Kohei;
Kanai, Tamotsu;
Atomi, Haruyuki;
Imanaka, Tadayuki;
Fujiwara, Shinsuke

Publication type:

Article

Genetic analyses of the functions of [NiFe]-hydrogenase maturation endopeptidases in the hyperthermophilic archaeon Thermococcus kodakarensis.

Published in:

Extremophiles, 2017, v. 21, n. 1, p. 27, doi. 10.1007/s00792-016-0875-1

By:

Kanai, Tamotsu;
Yasukochi, Ayako;
Simons, Jan-Robert;
Scott, Joseph;
Fukuda, Wakao;
Imanaka, Tadayuki;
Atomi, Haruyuki

Publication type:

Article

The chromosome copy number of the hyperthermophilic archaeon Thermococcus kodakarensis KOD1.

Published in:

Extremophiles, 2015, v. 19, n. 4, p. 741, doi. 10.1007/s00792-015-0750-5

By:

Spaans, Sebastiaan;
Oost, John;
Kengen, Servé

Publication type:

Article

The SF1 helicase encoded by the archaeal plasmid pTN2 of Thermococcus nautili.

Published in:

Extremophiles, 2014, v. 18, n. 4, p. 779, doi. 10.1007/s00792-014-0658-5

By:

Béguin, Pierre;
Baron, Bruno;
Gill, Sukhvinder;
Charpin, Nicole;
Forterre, Patrick

Publication type:

Article

Characterization of Family D DNA polymerase from Thermococcus sp. 9°N.

Published in:

Extremophiles, 2014, v. 18, n. 4, p. 653, doi. 10.1007/s00792-014-0646-9

By:

Greenough, Lucia;
Menin, Julie;
Desai, Nirav;
Kelman, Zvi;
Gardner, Andrew

Publication type:

Article

Architecture and characterization of a thermostable MoxR family AAA ATPase from Thermococcus kodakarensis KOD1.

Published in:

Extremophiles, 2014, v. 18, n. 3, p. 537, doi. 10.1007/s00792-014-0639-8

By:

Pham, Bang;
Lee, Sangmin;
Jia, Baolei;
Kwak, Jae;
Cheong, Gang-Won

Publication type:

Article

Characterization and gene deletion analysis of four homologues of group 3 pyridine nucleotide disulfide oxidoreductases from Thermococcus kodakarensis.

Published in:

Extremophiles, 2014, v. 18, n. 3, p. 603, doi. 10.1007/s00792-014-0643-z

By:

Harnvoravongchai, Phurt;
Kobori, Hiroki;
Orita, Izumi;
Nakamura, Satoshi;
Imanaka, Tadayuki;
Fukui, Toshiaki

Publication type:

Article

Different roles of two transcription factor B proteins in the hyperthermophilic archaeon Thermococcus kodakarensis.

Published in:

Extremophiles, 2014, v. 18, n. 3, p. 573, doi. 10.1007/s00792-014-0638-9

By:

Hidese, Ryota;
Nishikawa, Ryo;
Gao, Le;
Katano, Masahiro;
Imai, Tomohiro;
Kato, Satoru;
Kanai, Tamotsu;
Atomi, Haruyuki;
Imanaka, Tadayuki;
Fujiwara, Shinsuke

Publication type:

Article

Thermococcus kodakarensis has two functional PCNA homologs but only one is required for viability.

Published in:

Extremophiles, 2013, v. 17, n. 3, p. 453, doi. 10.1007/s00792-013-0526-8

By:

Pan, Miao;
Santangelo, Thomas;
Čuboňová, Ľubomíra;
Li, Zhuo;
Metangmo, Harlette;
Ladner, Jane;
Hurwitz, Jerard;
Reeve, John;
Kelman, Zvi

Publication type:

Article

High level expression and characterization of a thermostable lysophospholipase from Thermococcus kodakarensis KOD1.

Published in:

Extremophiles, 2012, v. 16, n. 4, p. 619, doi. 10.1007/s00792-012-0461-0

By:

Cui, Zhicheng;
Wang, Yuhan;
Pham, Bang;
Ping, Fangfang;
Pan, Hongyu;
Cheong, Gang-Won;
Zhang, Shihong;
Jia, Baolei

Publication type:

Article

An intermolecular disulfide bond is required for thermostability and thermoactivity of β-glycosidase from Thermococcus kodakarensis KOD1.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 18, p. 7825, doi. 10.1007/s00253-014-5731-6

By:

Hwa, Kuo-Yuan;
Subramani, Boopathi;
Shen, San-Tai;
Lee, Yu-May

Publication type:

Article

Proteolysis of abnormal prion protein with a thermostable protease from Thermococcus kodakarensis KOD1.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 5, p. 2113, doi. 10.1007/s00253-013-5091-7

By:

Koga, Yuichi;
Tanaka, Shun-ichi;
Sakudo, Akikazu;
Tobiume, Minoru;
Aranishi, Mutsuo;
Hirata, Azumi;
Takano, Kazufumi;
Ikuta, Kazuyoshi;
Kanaya, Shigenori

Publication type:

Article

Anthranilate phosphoribosyltransferase from the hyperthermophilic archaeon Thermococcus kodakarensis shows maximum activity with zinc and forms a unique dimeric structure.

Published in:

FEBS Open Bio, 2017, v. 7, n. 8, p. 1217, doi. 10.1002/2211-5463.12264

By:

Perveen, Sumera;
Rashid, Naeem;
Tang, Xiao-Feng;
Imanaka, Tadayuki;
Papageorgiou, Anastassios C.

Publication type:

Article

Ornithine cyclodeaminase/μ-crystallin homolog from the hyperthermophilic archaeon Thermococcus litoralis functions as a novel Δ1-pyrroline-2-carboxylate reductase involved in putative trans-3-hydroxy-l-proline metabolism.

Published in:

FEBS Open Bio, 2014, v. 4, p. 617, doi. 10.1016/j.fob.2014.07.005

By:

Watanabe, Seiya;
Tozawa, Yuzuru;
Watanabe, Yasuo

Publication type:

Article

Truncated Type II isopentenyl diphosphate isomerase from hyperthermophilic Achaeon Thermococcus kodakaraensis implicates the necessity of its N-terminal amino acid residues in protein thermostability.

Published in:

Pakistan Journal of Pharmaceutical Sciences, 2013, v. 26, n. 4, p. 733

By:

Siddiquit, Masood Ahmed;
Rashid, Naeem;
Habib-ur-Rehman

Publication type:

Article

Direct Sensing of 5-Methylcytosine by Polymerase Chain Reaction.

Published in:

Angewandte Chemie International Edition, 2014, v. 53, n. 31, p. 8154, doi. 10.1002/anie.201403745

By:

Aschenbrenner, Joos;
Drum, Matthias;
Topal, Hüsnü;
Wieland, Markus;
Marx, Andreas

Publication type:

Article

Hydrogen Production and Enzyme Activities in the Hyperthermophile Thermococcus paralvinellae Grown on Maltose, Tryptone, and Agricultural Waste.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00167

By:

Hensley, Sarah A.;
Moreira, Emily;
Holden, James F.

Publication type:

Article

Cysteine desulphurase plays an important role in environmental adaptation of the hyperthermophilic archaeon T hermococcus kodakarensis.

Published in:

Molecular Microbiology, 2014, v. 93, n. 2, p. 331, doi. 10.1111/mmi.12662

By:

Hidese, Ryota;
Inoue, Takahiro;
Imanaka, Tadayuki;
Fujiwara, Shinsuke

Publication type:

Article

Hyperthermophilic archaea produce membrane vesicles that can transfer DNA.

Published in:

Environmental Microbiology Reports, 2013, v. 5, n. 1, p. 109, doi. 10.1111/j.1758-2229.2012.00348.x

By:

Gaudin, Marie;
Gauliard, Emilie;
Schouten, Stefan;
Houel ‐ Renault, Ludivine;
Lenormand, Pascal;
Marguet, Evelyne;
Forterre, Patrick

Publication type:

Article

Greigite nanocrystals produced by hyperthermophilic archaea of Thermococcales order.

Published in:

PLoS ONE, 2018, v. 13, n. 8, p. 1, doi. 10.1371/journal.pone.0201549

By:

Gorlas, Aurore;
Jacquemot, Pierre;
Guigner, Jean-Michel;
Gill, Sukhvinder;
Forterre, Patrick;
Guyot, François

Publication type:

Article

Thermococcus kodakarensis DNA replication.

Published in:

Biochemical Society Transactions, 2013, v. 41, n. 1, p. 332, doi. 10.1042/BST20120303

By:

Li, Zhuo;
Kelman, Lori M.;
Kelman, Zvi

Publication type:

Article

Enzymatic activity of a subtilisin homolog, Tk-SP, from Thermococcus kodakarensis in detergents and its ability to degrade the abnormal prion protein.

Published in:

BMC Biotechnology, 2013, v. 12, n. 1, p. 1, doi. 10.1186/1472-6750-13-19

By:

Hirata, Azumi;
Hori, Yuki;
Koga, Yuichi;
Okada, Jun;
Sakudo, Akikazu;
Ikuta, Kazuyoshi;
Kanaya, Shigenori;
Takano, Kazufumi

Publication type:

Article

Genetic engineering of Pyrococcus furiosus to use chitin as a carbon source.

Published in:

BMC Biotechnology, 2013, v. 13, n. 1, p. 1, doi. 10.1186/1472-6750-13-9

By:

Kreuzer, Martina;
Schmutzler, Karolin;
Waege, Ingrid;
Thomm, Michael;
Hausner, Winfried

Publication type:

Article

Structure and function of an ancestral-type β-decarboxylating dehydrogenase from Thermococcus kodakarensis.

Published in:

Biochemical Journal, 2017, v. 474, n. 1, p. 105, doi. 10.1042/BCJ20160699

By:

Tetsu Shimizu;
Lulu Yin;
Ayako Yoshida;
Yuusuke Yokooji;
Shin-ichi Hachisuka;
Takaaki Sato;
Takeo Tomita;
Hiromi Nishida;
Haruyuki Atomi;
Tomohisa Kuzuyama;
Makoto Nishiyama

Publication type:

Article

Biochemical characterization of a recombinant pullulanase from Thermococcus kodakarensis KOD1.

Published in:

Letters in Applied Microbiology, 2013, v. 57, n. 4, p. 336, doi. 10.1111/lam.12118

By:

Han, T.;
Zeng, F.;
Li, Z.;
Liu, L.;
Wei, M.;
Guan, Q.;
Liang, X.;
Peng, Z.;
Liu, M.;
Qin, J.;
Zhang, S.;
Jia, B.

Publication type:

Article

Genome Replication in Thermococcus kodakarensis Independent of Cdc6 and an Origin of Replication.

Published in:

Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.02084

By:

Gehring, Alexandra M.;
Astling, David P.;
Matsumi, Rie;
Burkhart, Brett W.;
Kelman, Zvi;
Reeve, John N.;
Jones, Kenneth L.;
Santangelo, Thomas J.

Publication type:

Article

TFS and Spt4/5 accelerate transcription through archaeal histone‐based chromatin.

Published in:

Molecular Microbiology, 2019, v. 111, n. 3, p. 784, doi. 10.1111/mmi.14191

By:

Sanders, Travis J.;
Lammers, Marshall;
Marshall, Craig J.;
Walker, Julie E.;
Santangelo, Thomas J.;
Lynch, Erin R.

Publication type:

Article

Production of Curdlan Grown on Cassava Starch Waste Hydrolysates.

Published in:

Journal of Polymers & the Environment, 2018, v. 26, n. 1, p. 33, doi. 10.1007/s10924-016-0912-2

By:

Wu, Leilei;
Xu, Yan;
Wu, Shengjun;
Lu, Mingsheng;
Fang, Yaowei;
Wang, Shujun

Publication type:

Article

Structural study reveals the temperature-dependent conformational flexibility of Tk-PTP, a protein tyrosine phosphatase from Thermococcus kodakaraensis KOD1.

Published in:

PLoS ONE, 2018, v. 13, n. 5, p. 1, doi. 10.1371/journal.pone.0197635

By:

Yun, Hye-Yeoung;
Lee, Jinhyuk;
Kim, Hyunmin;
Ryu, Hyojung;
Shin, Ho-Chul;
Oh, Byung-Ha;
Ku, Bonsu;
Kim, Seung Jun

Publication type:

Article

Variants of sequence family B Thermococcus kodakaraensis DNA polymerase with increased mismatch extension selectivity.

Published in:

PLoS ONE, 2017, v. 12, n. 8, p. 1, doi. 10.1371/journal.pone.0183623

By:

Huber, Claudia;
Marx, Andreas

Publication type:

Article

TK1656, an L-asparaginase from Thermococcus kodakarensis, a novel candidate for therapeutic applications.

Published in:

Biologia, 2016, v. 71, n. 12, p. 1315, doi. 10.1515/biolog-2016-0168

By:

Chohan, Shahid Mahmood;
Nisar, Muhammad Atif;
Rashid, Naeem;
Gharib, Ghazaleh;
Bashir, Qamar;
Siddiqui, Masood Ahmed

Publication type:

Article

Thermostable adenosine 5′-monophosphate phosphorylase from Thermococcus kodakarensis forms catalytically active inclusion bodies.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-96073-5

By:

Kamel, Sarah;
Walczak, Miriam C.;
Kaspar, Felix;
Westarp, Sarah;
Neubauer, Peter;
Kurreck, Anke

Publication type:

Article

Overproduction of the membrane-bound [NiFe]-hydrogenase in Thermococcus kodakarensis and its effect on hydrogen production.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00847

By:

Tamotsu Kanai;
Simons, Jan-Robert;
Ryohei Tsukamoto;
Akihito Nakajima;
Yoshiyuki Omori;
Ryoji Matsuoka;
Haruki Beppu;
Tadayuki Imanaka;
Haruyuki Atomi;
Hemme, Christopher L.;
Sung Gyun Kang

Publication type:

Article

Proteome profiling of heat, oxidative, and salt stress responses in Thermococcus kodakarensis KOD1.

Published in:

Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00605

By:

Baolei Jia;
Jinliang Liu;
Le Van Duyet;
Ying Sun;
Yuan H. Xuan;
Gang-Won Cheong

Publication type:

Article

DNA polymerase hybrids derived from the family-B enzymes of Pyrococcus furiosus and Thermococcus kodakarensis: improving performance in the polymerase chain reaction.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00224

By:

Elshawadfy, Ashraf M.;
Keith, Brian J.;
H'Ng Ee Ooi;
Kinsman, Thomas;
Heslop, Pauline;
Connolly, Bernard A.

Publication type:

Article

Molecular cloning and characterization of TK1111, a cupin-type phosphoglucose isomerase from.

Published in:

Turkish Journal of Biochemistry / Turk Biyokimya Dergisi, 2013, v. 38, n. 4, p. 438, doi. 10.5505/tjb.2013.41275

By:

Abbas, Shahzada Nadeem;
Rashid, Naeem;
Aziz, Iram;
Akhtar, Muhammad

Publication type:

Article

Association of a multi-synthetase complex with translating ribosomes in the archaeon Thermococcus kodakarensis

Published in:

FEBS Letters, 2012, v. 586, n. 16, p. 2232, doi. 10.1016/j.febslet.2012.05.039

By:

Raina, Medha;
Elgamal, Sara;
Santangelo, Thomas J.;
Ibba, Michael

Publication type:

Article

Serine 363 of a Hydrophobic Region of Archaeal Ribulose 1,5-Bisphosphate Carboxylase/Oxygenase from Archaeoglobus fulgidus and Thermococcus kodakaraensis Affects CO<sub>2</sub>/O<sub>2</sub> Substrate Specificity and Oxygen Sensitivity.

Published in:

PLoS ONE, 2015, v. 10, n. 9, p. 1, doi. 10.1371/journal.pone.0138351

By:

Kreel, Nathan E.;
Tabita, F. Robert

Publication type:

Article

Systematic Functional Comparative Analysis of Four Single-Stranded DNA-Binding Proteins and Their Affection on Viral RNA Metabolism.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0055076

By:

Haiyan Shi;
Yonghui Zhang;
Guohui Zhang;
Jinlei Guo;
Xun Zhang;
Haiyan Song;
Jianxin Lv;
Jimin Gao;
Yuepeng Wang;
Litian Chen;
Yue Wang

Publication type:

Article

Crystal structure of a phosphoribosyl anthranilate isomerase from the hyperthermophilic archaeon Thermococcus kodakaraensis.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 11, p. 804, doi. 10.1107/S2053230X16015223

By:

Perveen, Sumera;
Rashid, Naeem;
Papageorgiou, Anastassios C.

Publication type:

Article

Crystal structure of the TK2203 protein from Thermococcus kodakarensis, a putative extradiol dioxygenase.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2016, v. 72, n. 6, p. 427, doi. 10.1107/S2053230X16006920

By:

Nishitani, Yuichi;
Simons, Jan-Robert;
Kanai, Tamotsu;
Atomi, Haruyuki;
Miki, Kunio

Publication type:

Article