Works about SYSTEMS biology

Results: 3891

Gradient matching accelerates mixed-effects inference for biochemical networks Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf154

By:

Oppen, Yulan B van;
Milias-Argeitis, Andreas

Publication type:

Article

Associations on the Fly, a new feature aiming to facilitate exploration of the Open Targets Platform evidence Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf070

By:

Cruz-Castillo, Carlos;
Fumis, Luca;
Mehta, Chintan;
Martinez-Osorio, Ricardo Esteban;
Roldan-Romero, Juan Maria;
Cornu, Helena;
Uniyal, Prashant;
Solano-Roman, Antonio;
Carmona, Miguel;
Ochoa, David;
McDonagh, Ellen Mary;
Buniello, Annalisa

Publication type:

Article

Wrong Facts and Overstated Concepts.

Published in:

Medical Journal of Dr. D.Y. Patil Vidyapeeth, 2025, v. 18, n. 2, p. 360, doi. 10.4103/mjdrdypu.mjdrdypu_1059_24

By:

Krishna, G L

Publication type:

Article

Medulloblastoma's master regulators and their association with patients' risk.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-00763-3

By:

Michaelsen, Gustavo Lovatto;
de Sousa Monteiro, Tayrone;
Imparato, Danilo Oliveira;
da Costa, João Vitor Almeida;
Silva, Daniel Rocha;
de Souza, Iara Dantas;
da Ribeiro-Dantas, Marcel Câmara;
Cabral-Marques, Otávio;
Sinigaglia, Marialva;
Dalmolin, Rodrigo Juliani Siqueira

Publication type:

Article

The crucial role of mitochondrial/chloroplast-related genes in viral genome replication and host defense: integrative systems biology analysis in plant-virus interaction.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1551123

By:

Shahriari, Amir Ghaffar;
Tahmasebi, Aminallah;
Ghodoum Parizipour, Mohamad Hamed;
Soltani, Zahra;
Tahmasebi, Ahmad;
Shahid, Muhammad Shafiq

Publication type:

Article

Basic research on circadian disruption using animal and human organoid models: a review.

Published in:

Biological Rhythm Research, 2025, v. 56, n. 5, p. 305, doi. 10.1080/09291016.2025.2459689

By:

Rahmati, Hamideh;
Garmabi, Behzad;
Ghazvini, Hamed;
Seyedhosseini Tamijani, Seyedeh Masoumeh;
Mousavi-Bourkheili, Seyedeh Maryam;
Niroumand Sarvandani, Mohammad;
Rafaiee, Raheleh

Publication type:

Article

Systems and Complexity Thinking in the General Practice Literature: An Integrative, Historical Narrative Review.

Published in:

Annals of Family Medicine, 2014, v. 12, n. 1, p. 66, doi. 10.1370/afm.1593

By:

Sturmberg, Joachim P.;
Martin, Carmel M.;
Katerndahl, David A.

Publication type:

Article

A Precision Medicine Initiative for Alzheimer's disease: the road ahead to biomarker-guided integrative disease modeling.

Published in:

2017

By:

Hampel, H.;
O'Bryant, S. E.;
Durrleman, S.;
Younesi, E.;
Rojkova, K.;
Escott-Price, V.;
Corvol, J-C.;
Broich, K.;
Dubois, B.;
Lista, S.;
Alzheimer Precision Medicine Initiative

Publication type:

journal article

Author index Volume 22 (2024).

Published in:: Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 6, p. 1, doi. 10.1142/S0219720024990014
Publication type:: Article

WinBEST-KIT: Biochemical reaction simulator that can define and customize algebraic equations and events as GUI components.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 6, p. N.PAG, doi. 10.1142/S0219720019500367

By:

Sekiguchi, Tatsuya;
Hamada, Hiroyuki;
Okamoto, Masahiro

Publication type:

Article

Introduction to JBCB Special Issue on BIOINFORMATICS 2019.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 5, p. N.PAG, doi. 10.1142/S0219720019020037

By:

Elisabetta, De Maria

Publication type:

Article

Centrality and the shortest path approach in the human interactome.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 4, p. N.PAG, doi. 10.1142/S0219720019500276

By:

Rubanova, Natalia;
Morozova, Nadya

Publication type:

Article

Selected Papers from the International Workshop on Cancer Bioinformatics and Intelligent Medicine (CBIM2018).

Published in:

2019

By:

Chu, Yen-Wei;
Lee, Yu Hong

Publication type:

Editorial

Introduction to the 9th Young Scientists School on Systems Biology and Bioinformatics (SBB'2017).

Published in:

Journal of Bioinformatics & Computational Biology, 2018, v. 16, n. 1, p. -1, doi. 10.1142/S0219720018020018

By:

Orlov, Yuriy L.;
Tatarinova, Tatiana V.;
Zakhartsev, Maksim V.;
Kolchanov, Nikolay A.

Publication type:

Article

A study of structural properties of gene network graphs for mathematical modeling of integrated mosaic gene networks.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720016500451

By:

Petrovskaya, Olga V.;
Petrovskiy, Evgeny D.;
Lavrik, Inna N.;
Ivanisenko, Vladimir A.

Publication type:

Article

Editorial - Bioinformatics development at the BGRS\SB conference series: 10th anniversary.

Published in:

Journal of Bioinformatics & Computational Biology, 2017, v. 15, n. 2, p. -1, doi. 10.1142/S0219720017020012

By:

Orlov, Yuriy L.;
Kolchanov, Nikolay A.;
Hofestädt, Ralf;
Wong, Limsoon

Publication type:

Article

Introductory note for JBCB special issue.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 6, p. -1, doi. 10.1142/S0219720016020054

By:

Verma, Chandra;
Bond, Peter

Publication type:

Article

Reverse engineering of gene regulatory network using restricted gene expression programming.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 5, p. -1, doi. 10.1142/S0219720016500219

By:

Yang, Bin;
Liu, Sanrong;
Zhang, Wei

Publication type:

Article

Introduction to the CSBio2014 special issue.

Published in:

Journal of Bioinformatics & Computational Biology, 2015, v. 13, n. 3, p. -1, doi. 10.1142/S0219720015020023

By:

Li, Xiao-Li;
Zheng, Jie

Publication type:

Article

Formal modeling of a system of chemical reactions under uncertainty.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 5, p. -1, doi. 10.1142/S0219720014400022

By:

Ghosh, Krishnendu;
Schlipf, John

Publication type:

Article

Unix interfaces, Kleisli, bucandin structure, etc. - The heroic beginning of bioinformatics in Singapore.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 3, p. 1471002-1, doi. 10.1142/S0219720014710024

By:

Eisenhaber, Frank

Publication type:

Article

ODEion - A SOFTWARE MODULE FOR STRUCTURAL IDENTIFICATION OF ORDINARY DIFFERENTIAL EQUATIONS.

Published in:

Journal of Bioinformatics & Computational Biology, 2014, v. 12, n. 1, p. -1, doi. 10.1142/S0219720013500157

By:

GENNEMARK, PETER;
WEDELIN, DAG

Publication type:

Article

STUDYING THE ROLE OF ApoE IN ALZHEIMER'S DISEASE PATHOGENESIS USING A SYSTEMS BIOLOGY MODEL.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 5, p. -1, doi. 10.1142/S0219720013420031

By:

KYRTSOS, CHRISTINA ROSE;
BARAS, JOHN S.

Publication type:

Article

FOREWORD TO THE SPECIAL ISSUE ON SELECTED PAPERS FROM THE 5TH INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND COMPUTATIONAL BIOLOGY (BICoB 2013).

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 5, p. -1, doi. 10.1142/S0219720013020022

By:

Dasgupta, Bhaskar;
Al-Mubaid, Hisham;
Saeed, Fahad

Publication type:

Article

A SURVEY OF COMPUTATIONAL METHODS FOR PROTEIN COMPLEX PREDICTION FROM PROTEIN INTERACTION NETWORKS.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 2, p. 1, doi. 10.1142/S021972001230002X

By:

SRIHARI, SRIGANESH;
HON WAI LEONG

Publication type:

Article

INTRODUCTORY NOTE FOR BGRS-2012 SPECIAL ISSUE.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013020010

By:

Kolchanov, Nikolay A.;
Orlov, Yuriy L.

Publication type:

Article

SENSITIVITY ANALYSIS FOR STUDYING THE RELATION BETWEEN BIOCHEMICAL REACTIONS AND METABOLIC PHENOTYPES.

Published in:

Journal of Bioinformatics & Computational Biology, 2013, v. 11, n. 1, p. -1, doi. 10.1142/S0219720013400027

By:

MAJ, CARLO;
MOSCA, ETTORE;
MERELLI, IVAN;
MAURI, GIANCARLO;
MILANESI, LUCIANO

Publication type:

Article

MODELING AND ANALYSIS OF BIOPATHWAYS DYNAMICS.

Published in:

Journal of Bioinformatics & Computational Biology, 2012, v. 10, n. 4, p. 1231001-1, doi. 10.1142/S0219720012310014

By:

LIU, BING;
THIAGARAJAN, P. S.

Publication type:

Article

INFERENCE OF S-SYSTEM MODELS OF GENE REGULATORY NETWORKS USING IMMUNE ALGORITHM.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, p. 75, doi. 10.1142/S0219720011005768

By:

NAKAYAMA, TOMOYOSHI;
SENO, SHIGETO;
TAKENAKA, YOICHI;
MATSUDA, HIDEO

Publication type:

Article

A SYSTEMS BIOLOGY APPROACH FOR DETECTING TOXICITY-RELATED HOTSPOTS INSIDE PROTEIN INTERACTION NETWORKS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 647, doi. 10.1142/S0219720011005707

By:

DESAI, KAUSHAL;
BROTT, DAVID;
HU, XIAOHUA;
CHRISTIANSON, ANASTASIA

Publication type:

Article

INTRODUCTION - The First IEEE Conference on Healthcare Informatics, Imaging, and Systems biology HISB'11.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. v, doi. 10.1142/S0219720011005719

By:

Chen, Xue-Wen;
Miyano, Satoru

Publication type:

Article

VISUALIZATION IN SIMULATION TOOLS:: REQUIREMENTS AND A TOOL SPECIFICATION TO SUPPORT THE TEACHING OF DYNAMIC BIOLOGICAL PROCESSES.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 4, p. 579

By:

JØRGENSEN, KATARINA M.;
HADDOW, PAULINE C.

Publication type:

Article

INTRODUCTION:: ADVANCES IN COMPUTATIONAL SYSTEMS BIOINFORMATICS.

Published in:

Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 2, p. v, doi. 10.1142/S0219720011005537

By:

WITTKOP, TOBIAS;
MOONEY, SEAN D.

Publication type:

Article

QUANTIFYING SLOW EVOLUTIONARY DYNAMICS IN RNA FITNESS LANDSCAPES.

Published in:

Journal of Bioinformatics & Computational Biology, 2010, v. 8, n. 6, p. 1027, doi. 10.1142/S0219720010005075

By:

ŠULC, PETR;
WAGNER, ANDREAS;
MARTIN, OLIVIER C.

Publication type:

Article

Complexity at Large.

Published in:: Complexity, 2014, v. 20, n. 2, p. 1, doi. 10.1002/cplx.21568
Publication type:: Article

Pnictogen‐Assisted Self‐Assembly as a Means to Study Mediated Thiol/Disulfide Exchange in Supramolecular Dynamic Covalent Assemblies.

Published in:

Chemistry - A European Journal, 2024, v. 30, n. 67, p. 1, doi. 10.1002/chem.202402702

By:

Davis, Willow A.;
Zakharov, Lev N.;
Johnson, Darren W.

Publication type:

Article

Chlamydomonas cells transition through distinct Fe nutrition stages within 48 h of transfer to Fe-free medium.

Published in:

Photosynthesis Research, 2024, v. 161, n. 3, p. 213, doi. 10.1007/s11120-024-01103-8

By:

Liu, Helen W.;
Urzica, Eugen I.;
Gallaher, Sean D.;
Schmollinger, Stefan;
Blaby-Haas, Crysten E.;
Iwai, Masakazu;
Merchant, Sabeeha S.

Publication type:

Article

A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units.

Published in:

Photosynthesis Research, 2013, v. 117, n. 1-3, p. 339, doi. 10.1007/s11120-013-9894-2

By:

Xin, Chang-Peng;
Yang, Jin;
Zhu, Xin-Guang

Publication type:

Article

A systems biology approach to optimising hosts for industrial protein production.

Published in:

Biotechnology Letters, 2013, v. 35, n. 12, p. 1961, doi. 10.1007/s10529-013-1297-0

By:

Royle, Kate;
Kontoravdi, Cleo

Publication type:

Article

Aspergillus as a multi-purpose cell factory: current status and perspectives.

Published in:

Biotechnology Letters, 2011, v. 33, n. 3, p. 469, doi. 10.1007/s10529-010-0473-8

By:

Meyer, Vera;
Bo Wu;
Ram, Arthur

Publication type:

Article

The yin and yang of yeast: biodiversity research and systems biology as complementary forces driving innovation in biotechnology.

Published in:

Biotechnology Letters, 2011, v. 33, n. 3, p. 477, doi. 10.1007/s10529-010-0482-7

By:

Roberts, Ian N.;
Oliver, Stephen G.

Publication type:

Article

UV-B and UV-C radiation trigger both common and distinctive signal perceptions and transmissions in Pinus tabuliformis Carr.

Published in:

Tree Physiology, 2022, v. 42, n. 8, p. 1587, doi. 10.1093/treephys/tpac021

By:

Xu, Jie;
Luo, Hang;
Zhou, Shan-Shan;
Jiao, Si-Qian;
Jia, Kai-Hua;
Nie, Shuai;
Liu, Hui;
Zhao, Wei;
Wang, Xiao-Ru;
El-Kassaby, Yousry A;
Porth, Ilga;
Mao, Jian-Feng

Publication type:

Article

UV-B-induced molecular mechanisms of stress physiology responses in the major northern Chinese conifer Pinus tabuliformis Carr.

Published in:

Tree Physiology, 2021, v. 41, n. 7, p. 1247, doi. 10.1093/treephys/tpaa180

By:

Xu, Jie;
Nie, Shuai;
Xu, Chao-Qun;
Liu, Hui;
Jia, Kai-Hua;
Zhou, Shan-Shan;
Zhao, Wei;
Zhou, Xian-Qing;
El-Kassaby, Yousry A;
Wang, Xiao-Ru;
Porth, Ilga;
Mao, Jian-Feng

Publication type:

Article

Volatile fingerprints of common and rare honeys produced in Greece: in search of PHVMs with implementation of the honey code.

Published in:

European Food Research & Technology, 2019, v. 245, n. 1, p. 23, doi. 10.1007/s00217-018-3137-x

By:

Karabagias, Ioannis K.;
Nikolaou, Christos;
Karabagias, Vassilios K.

Publication type:

Article

High-altitude pulmonary hypertension: a comprehensive review of mechanisms and management.

Published in:

2025

By:

Yang, Xitong;
Liu, Hong;
Wu, Xinhua

Publication type:

Literature Review

Advances in phosphopeptide enrichment techniques for phosphoproteomics.

Published in:

Amino Acids, 2012, v. 43, n. 3, p. 1009, doi. 10.1007/s00726-012-1288-9

By:

Beltran, Luisa;
Cutillas, Pedro

Publication type:

Article

A combined model of hepatic polyamine and sulfur amino acid metabolism to analyze S-adenosyl methionine availability.

Published in:

Amino Acids, 2012, v. 42, n. 2/3, p. 597, doi. 10.1007/s00726-011-1035-7

By:

Reyes-Palomares, Armando;
Montañez, Raúl;
Sánchez-Jiménez, Francisca;
Medina, Miguel

Publication type:

Article

Systems bioenergetics of creatine kinase networks: physiological roles of creatine and phosphocreatine in regulation of cardiac cell function.

Published in:

Amino Acids, 2011, v. 40, n. 5, p. 1333, doi. 10.1007/s00726-011-0854-x

By:

Guzun, R.;
Timohhina, N.;
Tepp, K.;
Gonzalez-Granillo, M.;
Shevchuk, I.;
Chekulayev, V.;
Kuznetsov, A.;
Kaambre, T.;
Saks, V.

Publication type:

Article

From systems chemistry to systems astrobiology: life in the universe as an emergent phenomenon.

Published in:

International Journal of Astrobiology, 2013, v. 12, n. 1, p. 8, doi. 10.1017/S1473550412000262

By:

Chela-Flores, J.

Publication type:

Article

System Pharmacological Approach to Investigate and Validate Multitargeted and Therapeutic Effect of Furocoumarins of Apium graveolens L. for Treatment of Kidney Disease.

Published in:

Advances in Pharmacological & Pharmaceutical Sciences, 2024, v. 2024, p. 1, doi. 10.1155/2024/5543561

By:

Yasheshwar;
Gaurav;
Ekkbal, Rustam;
Gupta, Prem;
Gyawali, Rajendra

Publication type:

Article