Works matching DE "SYSTEMS biology"

Results: 3942

Quantum-inspired computational drug design for phytopharmaceuticals: a herbal holography analysis.

Published in:

Journal of Molecular Modeling, 2025, v. 31, n. 7, p. 1, doi. 10.1007/s00894-025-06412-w

By:

S, Yashwanth;
Naik, Prasiddhi;
B R, Darshan;
Patil, Chethan;
Goudanavar, Prakash

Publication type:

Article

System biology-based assessment of the molecular mechanism of epigallocatechin gallate in Parkinson's disease: via network pharmacology, in-silico evaluation & in-vitro studies.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-11592-9

By:

Fanai, Hannah Lalengzuali;
Chand, Jagdish;
Ahmad, Sheikh F.;
Attia, Sabry M.;
Emran, Talha Bin

Publication type:

Article

Regulation of plant gene expression by tsRNAs in response to abiotic stress.

Published in:

PeerJ, 2025, p. 1, doi. 10.7717/peerj.19487

By:

Li, Chunmei;
Zhu, Jing;
Jin, Han;
Feng, Haotian;
Zhuang, Haimin;
Du, Zijun;
Zhu, Guolin;
He, Haiyang;
Ye, Fuyang;
Mo, Zhaohui;
Hu, Qingtao;
Chen, Zhenbang;
Liu, Kai;
Wan, Xiaorong

Publication type:

Article

Author Correction: Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms.

Published in:

2025

By:

Mazein, Alexander;
Ostaszewski, Marek;
Kuperstein, Inna;
Watterson, Steven;
Le Novère, Nicolas;
Lefaudeux, Diane;
De Meulder, Bertrand;
Pellet, Johann;
Balaur, Irina;
Saqi, Mansoor;
Nogueira, Maria Manuela;
HeFeng, Feng Q.;
Parton, Andrew;
Lemonnier, Nathanaël;
Gawron, Piotr;
Gebel, Stephan;
Hainaut, Pierre;
Ollert, Markus;
Dogrusoz, Ugur;
Barillot, Emmanuel

Publication type:

Correction Notice

Author Correction: A roadmap towards personalized immunology.

Published in:

2025

By:

Delhalle, Sylvie;
Bode, Sebastian F. N.;
Balling, Rudi;
Ollert, Markus;
HeFeng, Feng Q.

Publication type:

Correction Notice

Knowledge-guided multi-level network modeling with experimental characterization identifies PRKCA as a novel biomarker and tumor suppressor triggering ferroptosis in prostate cancer Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf220

By:

Lin, Yuxin;
Jia, Zongming;
Wu, Jixiang;
Yang, Hubo;
Chen, Xin;
Wang, He;
Wei, Xuedong;
Yan, Wenying;
Qi, Xin;
Huang, Yuhua

Publication type:

Article

On "Bioinformatics in Russia: history and present-day landscape" by M.A. Nawaz, I.E. Pamirsky, and K.S. Golokhvast Open Access.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 3, p. 1, doi. 10.1093/bib/bbaf161

By:

Gelfand, Mikhail S

Publication type:

Article

Single-cell transcriptome and multi-omics integration reveal ferroptosis-driven immune microenvironment remodeling in knee osteoarthritis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1608378

By:

Wu, Yushun;
Liu, Jing;
Yu, Wenying;
Wang, Xiaoding;
Li, Jian;
Zeng, Weiquan

Publication type:

Article

Jaxkineticmodel: Neural ordinary differential equations inspired parameterization of kinetic models.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pcbi.1012733

By:

van Lent, Paul;
Bunkova, Olga;
Magyar, Bálint;
Planken, Léon;
Schmitz, Joep;
Abeel, Thomas

Publication type:

Article

CYLD as a key regulator of myocardial infarction-to-heart failure transition revealed by multi-omics integration.

Published in:

Frontiers in Genetics, 2025, p. 1, doi. 10.3389/fgene.2025.1592985

By:

Xu, Jingya;
Dong, Zhonghua;
Li, Zhaodong;
Wang, Xuan

Publication type:

Article

Author Correction: Mitochondria interaction networks show altered topological patterns in Parkinson's disease.

Published in:

2025

By:

Zanin, Massimiliano;
Santos, Bruno F. R.;
Antony, Paul M. A.;
Berenguer-Escuder, Clara;
Larsen, Simone B.;
Hanss, Zoé;
Barbuti, Peter A.;
Baumuratov, Aidos S.;
Grossmann, Dajana;
Capelle, Christophe M.;
Weber, Joseph;
Balling, Rudi;
Ollert, Markus;
Krüger, Rejko;
Diederich, Nico J.;
HeFeng, Feng Q.

Publication type:

Correction Notice

Merritt-Putnam Symposium | Developmental and Epileptic Encephalopathies—Current Concepts and Novel Approaches.

Published in:

Epilepsy Currents, 2025, v. 25, n. 3, p. 229, doi. 10.1177/15357597251320142

By:

Scott, Rodney C.;
Hsieh, Jenny;
McTague, Amy;
Mahoney, J. Matthew;
Christian-Hinman, Catherine A.

Publication type:

Article

Trioxane-based MS-cleavable cross-linking mass spectrometry for profiling multimeric interactions of cellular networks.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60642-3

By:

Yu, Clinton;
Novitsky, Eric;
Balasubramani, Sree Ganesh;
Wang, Xiaorong;
Shen, Xiyu;
Yang, Qin;
Rychnovsky, Scott;
Echeverria, Ignacia;
Huang, Lan

Publication type:

Article

Assessment of the cytostasis and chromosomal instability potential of myricetin and its chemopreventive effect against bleomycin-induced cyto-genotoxicity.

Published in:

Journal of Toxicology & Environmental Health: Part A, 2025, v. 88, n. 17, p. 688, doi. 10.1080/15287394.2025.2491556

By:

Trintinaglia, Michele;
de Souza, Ana Paula;
Gonçalves Trindade, Maria Eduarda;
Lehmann, Mauricio;
Conter, Felipe Umpierre;
Dihl, Rafael Rodrigues

Publication type:

Article

A Systems Hypothesis of Lipopolysaccharide-Induced Vitamin Transport Suppression and Metabolic Reprogramming in Autism Spectrum Disorders: An Open Call for Validation and Therapeutic Translation.

Published in:

Metabolites (2218-1989), 2025, v. 15, n. 6, p. 399, doi. 10.3390/metabo15060399

By:

Dervishi, Albion

Publication type:

Article

Omics Sciences in Regular Physical Activity.

Published in:

International Journal of Molecular Sciences, 2025, v. 26, n. 12, p. 5529, doi. 10.3390/ijms26125529

By:

Militello, Rosamaria;
Luti, Simone;
Modesti, Alessandra

Publication type:

Article

Comparative meta-analysis of barely transcriptome: Pathogen type determines host preference.

Published in:

PLoS ONE, 2025, v. 20, n. 6, p. 1, doi. 10.1371/journal.pone.0320708

By:

Soltani, Zahra;
Moghadam, Ali;
Shamekh, Mohammadreza

Publication type:

Article

Advancing Bladder Cancer Biomarker Discovery: Integrating Mass Spectrometry and Molecular Imaging.

Published in:

Onco, 2025, v. 5, n. 2, p. 13, doi. 10.3390/onco5020013

By:

Vedarethinam, Vadanasundari

Publication type:

Article

Bacterial development: Racing to decide.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 2, p. 84, doi. 10.1038/nrmicro2735

By:

Muers, Mary

Publication type:

Article

Applying concepts of plant nutrition in the real-world: Designing vertical farming systems.

Published in:

Science Activities, 2023, v. 60, n. 1, p. 25, doi. 10.1080/00368121.2022.2138249

By:

Tan, Aik-Ling;
Ng, Yong Sim;
Koh, Jaime;
Ong, Yann Shiou;
Koh, Dominic

Publication type:

Article

CellMiner HCC: a microarray-based expression database for hepatocellular carcinoma cell lines.

Published in:

Liver International, 2014, v. 34, n. 4, p. 621, doi. 10.1111/liv.12292

By:

Staib, Frank;
Krupp, Markus;
Maass, Thorsten;
Itzel, Timo;
Weinmann, Arndt;
Lee, Ju ‐ Seog;
Schmidt, Bertil;
Müller, Martina;
Thorgeirsson, Snorri S.;
Galle, Peter R.;
Teufel, Andreas

Publication type:

Article

Etiology and Its Discontents.

Published in:

Innovation, 2015, v. 14, n. 1, p. 4

By:

Hong Hai

Publication type:

Article

Chlamydomonas cells transition through distinct Fe nutrition stages within 48 h of transfer to Fe-free medium.

Published in:

Photosynthesis Research, 2024, v. 161, n. 3, p. 213, doi. 10.1007/s11120-024-01103-8

By:

Liu, Helen W.;
Urzica, Eugen I.;
Gallaher, Sean D.;
Schmollinger, Stefan;
Blaby-Haas, Crysten E.;
Iwai, Masakazu;
Merchant, Sabeeha S.

Publication type:

Article

A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units.

Published in:

Photosynthesis Research, 2013, v. 117, n. 1-3, p. 339, doi. 10.1007/s11120-013-9894-2

By:

Xin, Chang-Peng;
Yang, Jin;
Zhu, Xin-Guang

Publication type:

Article

Identification of components in biochemical pathways: extensive application to SBML models.

Published in:

Natural Computing, 2014, v. 13, n. 3, p. 351, doi. 10.1007/s11047-014-9433-x

By:

Pardini, Giovanni;
Milazzo, Paolo;
Maggiolo-Schettini, Andrea

Publication type:

Article

Petri net models for the semi-automatic construction of large scale biological networks.

Published in:

Natural Computing, 2011, v. 10, n. 3, p. 1077, doi. 10.1007/s11047-009-9151-y

By:

Ming Chen;
Hariharaputran, Sridhar;
Hofestädt, Ralf;
Kormeier, Benjamin;
Spangardt, Sarah

Publication type:

Article

Hybrid Petri net based modeling for biological pathway simulation.

Published in:

Natural Computing, 2011, v. 10, n. 3, p. 1099, doi. 10.1007/s11047-009-9164-6

By:

Matsuno, Hiroshi;
Nagasaki, Masao;
Miyano, Satoru

Publication type:

Article

Preface: Petri nets for Systems and Synthetic Biology.

Published in:

Natural Computing, 2011, v. 10, n. 3, p. 987, doi. 10.1007/s11047-011-9263-z

By:

Heiner, Monika

Publication type:

Article

P systems with active membranes: trading time for space.

Published in:

Natural Computing, 2011, v. 10, n. 1, p. 167, doi. 10.1007/s11047-010-9189-x

By:

Porreca, Antonio E.;
Leporati, Alberto;
Mauri, Giancarlo;
Zandron, Claudio

Publication type:

Article

A review of the nondeterministic waiting time algorithm.

Published in:

Natural Computing, 2011, v. 10, n. 1, p. 139, doi. 10.1007/s11047-010-9195-z

By:

Jack, John;
Păun, Andrei;
Rodríguez-Patón, Alfonso

Publication type:

Article

On discrete models and immunological algorithms for protein structure prediction.

Published in:

Natural Computing, 2011, v. 10, n. 1, p. 91, doi. 10.1007/s11047-010-9196-y

By:

Cutello, Vincenzo;
Morelli, Giuseppe;
Nicosia, Giuseppe;
Pavone, Mario;
Scollo, Giuseppe

Publication type:

Article

Deterministic and stochastic P systems for modelling cellular processes.

Published in:

Natural Computing, 2010, v. 9, n. 2, p. 457, doi. 10.1007/s11047-009-9158-4

By:

Gheorghe, Marian;
Manca, Vincenzo;
Romero-Campero, Francisco J.

Publication type:

Article

Hybrid Functional Petri Nets as MP systems.

Published in:

Natural Computing, 2010, v. 9, n. 1, p. 61, doi. 10.1007/s11047-009-9121-4

By:

Castellini, Alberto;
Franco, Giuditta;
Manca, Vincenzo

Publication type:

Article

Ten Challenges on Cryptococcus and Cryptococcosis.

Published in:

Mycopathologia, 2012, v. 173, n. 5/6, p. 303, doi. 10.1007/s11046-011-9473-z

By:

Del Poeta, Maurizio;
Casadevall, Arturo

Publication type:

Article

Virtual NEURON: a strategy for merged biochemical and electrophysiological modeling.

Published in:

Journal of Computational Neuroscience, 2011, v. 31, n. 2, p. 385, doi. 10.1007/s10827-011-0317-0

By:

Brown, Sherry-Ann;
Moraru, Ion;
Schaff, James;
Loew, Leslie

Publication type:

Article

Human Umbilical Vein Endothelial Cells as a Versatile Cellular Model System in Diverse Experimental Paradigms: An Ultrastructural Perspective.

Published in:

Microscopy & Microanalysis, 2024, v. 30, n. 3, p. 419, doi. 10.1093/mam/ozae048

By:

Duranova, Hana;
Kuzelova, Lenka;
Borotova, Petra;
Simora, Veronika;
Fialkova, Veronika

Publication type:

Article

Mass-produced Spirulina-mediated altered responses in ARPE-19 and HaCaT cells for biomedical applications.

Published in:

Food & Bioproducts Processing: Transactions of the Institution of Chemical Engineers Part C, 2022, v. 131, p. 102, doi. 10.1016/j.fbp.2021.11.004

By:

Su-Eon Jin;
Sung Jae Lee;
Cheon-Young Park

Publication type:

Article

And Lophotrochozoa makes three: Notch/Hes signaling in annelid segmentation.

Published in:

Development Genes & Evolution, 2009, v. 219, n. 1, p. 37, doi. 10.1007/s00427-008-0264-6

By:

Rivera, Ajna S.;
Weisblat, David A.

Publication type:

Article

In memoriam: Stefan Hohmann.

Published in:: Current Genetics, 2021, v. 67, n. 6, p. 831, doi. 10.1007/s00294-021-01209-9
Publication type:: Article

Proteome signatures-how are they obtained and what do they teach us?

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 18, p. 7417, doi. 10.1007/s00253-015-6795-7

By:

da Costa, João;
Carvalhais, Virginia;
Ferreira, Rita;
Amado, Francisco;
Vilanova, Manuel;
Cerca, Nuno;
Vitorino, Rui

Publication type:

Article

Escherichia coli W shows fast, highly oxidative sucrose metabolism and low acetate formation.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 21, p. 9033, doi. 10.1007/s00253-014-5956-4

By:

Arifin, Yalun;
Archer, Colin;
Lim, SooA;
Quek, Lake-Ee;
Sugiarto, Haryadi;
Marcellin, Esteban;
Vickers, Claudia;
Krömer, Jens;
Nielsen, Lars

Publication type:

Article

Towards habitat-oriented systems biology of ' Aromatoleum aromaticum' EbN1.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 8, p. 3371, doi. 10.1007/s00253-013-5466-9

By:

Rabus, Ralf;
Trautwein, Kathleen;
Wöhlbrand, Lars

Publication type:

Article

Developing Bacillus spp. as a cell factory for production of microbial enzymes and industrially important biochemicals in the context of systems and synthetic biology.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 14, p. 6113, doi. 10.1007/s00253-013-4960-4

By:

Liu, Long;
Liu, Yanfeng;
Shin, Hyun-dong;
Chen, Rachel;
Wang, Nam;
Li, Jianghua;
Du, Guocheng;
Chen, Jian

Publication type:

Article

Utility of gel-free, label-free shotgun proteomics approaches to investigate microorganisms.

Published in:

Applied Microbiology & Biotechnology, 2011, v. 90, n. 2, p. 407, doi. 10.1007/s00253-011-3172-z

By:

Porteus, Bianca;
Kocharunchitt, Chawalit;
Nilsson, Rolf E.;
Ross, Tom;
Bowman, John P.

Publication type:

Article

Metabolic fluxes and beyond-systems biology understanding and engineering of microbial metabolism.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 88, n. 5, p. 1065, doi. 10.1007/s00253-010-2854-2

By:

Kohlstedt, Michael;
Becker, Judith;
Wittmann, Christoph

Publication type:

Article

The metabolomics of carotenoids in engineered cell factory.

Published in:

Applied Microbiology & Biotechnology, 2009, v. 83, n. 6, p. 989, doi. 10.1007/s00253-009-2069-6

By:

Guan-Nan Liu;
Yue-Hui Zhu;
Jian-Guo Jiang

Publication type:

Article

CONTROLLING THE CELL CYCLE RESTRICTION SWITCH ACROSS THE INFORMATION GRADIENT.

Published in:

Advances in Complex Systems, 2019, v. 22, n. 7/8, p. N.PAG, doi. 10.1142/S0219525919500206

By:

ROZUM, JORDAN C.;
ALBERT, RÉKA

Publication type:

Article

Advances in Extracellular Matrix-Mimetic Hydrogels to Guide Stem Cell Fate.

Published in:

Cells Tissues Organs, 2023, v. 211, n. 6, p. 703, doi. 10.1159/000514851

By:

Stowers, Ryan S.

Publication type:

Article

A Computational Systems Biology Approach Identifies SLUG as a Mediator of Partial Epithelial-Mesenchymal Transition (EMT).

Published in:

Cells Tissues Organs, 2023, v. 211, n. 6, p. 689, doi. 10.1159/000512520

By:

Subbalakshmi, Ayalur R.;
Sahoo, Sarthak;
Biswas, Kuheli;
Jolly, Mohit Kumar

Publication type:

Article

Multi-omic data integration and analysis using systems genomics approaches: methods and applications in animal production, health and welfare.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0217-x

By:

Suravajhala, Prashanth;
Kogelman, Lisette J. A.;
Kadarmideen, Haja N.

Publication type:

Article