Works matching DE "SYNTROPHISM"

Results: 157

Coarse-grained model of serial dilution dynamics in synthetic human gut microbiome.

Published in:

PLoS Computational Biology, 2025, v. 21, n. 7, p. 1, doi. 10.1371/journal.pcbi.1013222

By:

Mahajan, Tarun;
Maslov, Sergei

Publication type:

Article

Environmental microbiology: Disentangling syntrophy.

Published in:

Nature Reviews Microbiology, 2014, v. 12, n. 1, p. 7, doi. 10.1038/nrmicro3194

By:

Molloy, Sheilagh

Publication type:

Article

Oxidation of glucose by syntrophic association between Geobacter and hydrogenotrophic methanogens in microbial fuel cell.

Published in:

Biotechnology Letters, 2017, v. 39, n. 2, p. 253, doi. 10.1007/s10529-016-2247-4

By:

Oyiwona, Godwin;
Ogbonna, James;
Anyanwu, Chukwudi;
Ishizaki, So;
Kimura, Zen-ichiro;
Okabe, Satoshi

Publication type:

Article

Inulin-type fructan fermentation by bifidobacteria depends on the strain rather than the species and region in the human intestine.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 9, p. 4097, doi. 10.1007/s00253-016-7351-9

By:

Selak, Marija;
Rivière, Audrey;
Moens, Frédéric;
Van den Abbeele, Pieter;
Geirnaert, Annelies;
Rogelj, Irena;
Leroy, Frédéric;
De Vuyst, Luc

Publication type:

Article

How microbial glycosyl hydrolase activity in the gut mucosa initiates microbial cross-feeding.

Published in:

Glycobiology, 2022, v. 39, n. 3, p. 182, doi. 10.1093/glycob/cwab105

By:

Berkhout, Maryse D;
Plugge, Caroline M;
Belzer, Clara

Publication type:

Article

Synergistic effects of the chitosan addition and polysaccharides-EPS on the formation of anaerobic granules.

Published in:

Environmental Technology, 2016, v. 37, n. 21, p. 2713, doi. 10.1080/09593330.2016.1160957

By:

Hudayah, N.;
Suraraksa, B.;
Chaiprasert, P.

Publication type:

Article

Author Correction: Thermophilic Hadarchaeota grow on long-chain alkanes in syntrophy with methanogens.

Published in:

2025

By:

Yu, Tiantian;
Fu, Lin;
Wang, Yinzhao;
Dong, Yijing;
Chen, Yifan;
Wegener, Gunter;
Cheng, Lei;
Wang, Fengping

Publication type:

Correction Notice

Genome-scale metabolic modelling reveals interactions and key roles of symbiont clades in a sponge holobiont.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-55222-w

By:

Zhang, Shan;
Song, Weizhi;
Marinos, Geogios;
Waschina, Silvio;
Zimmermann, Johannes;
Kaleta, Christoph;
Thomas, Torsten

Publication type:

Article

Emergence of sector and spiral patterns from a two-species mutualistic cross-feeding model.

Published in:

PLoS ONE, 2022, v. 17, n. 10, p. 1, doi. 10.1371/journal.pone.0276268

By:

Lin, Jiaqi;
Sun, Hui;
Dong, JiaJia

Publication type:

Article

The effect of droplet size on syntrophic dynamics in droplet-enabled microbial co-cultivation.

Published in:

PLoS ONE, 2022, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0266282

By:

Tan, James Y.;
Saleski, Tatyana E.;
Lin, Xiaoxia Nina

Publication type:

Article

Evolution and stability of complex microbial communities driven by trade-offs.

Published in:

Molecular Systems Biology, 2024, v. 20, n. 9, p. 997, doi. 10.1038/s44320-024-00051-8

By:

Huang, Yanqing;
Mukherjee, Avik;
Schink, Severin;
Benites, Nina Catherine;
Basan, Markus

Publication type:

Article

Unravelling metabolic cross‐feeding in a yeast–bacteria community using <sup>13</sup>C‐based proteomics.

Published in:

Molecular Systems Biology, 2023, v. 19, n. 4, p. 1, doi. 10.15252/msb.202211501

By:

Gabrielli, Natalia;
Maga‐Nteve, Christoniki;
Kafkia, Eleni;
Rettel, Mandy;
Loeffler, Jakob;
Kamrad, Stephan;
Typas, Athanasios;
Patil, Kiran Raosaheb

Publication type:

Article

Fe(III) oxides protect fermenter-methanogen syntrophy against interruption by elemental sulfur via stiffening of Fe(II) sulfides produced by sulfur respiration.

Published in:

Extremophiles, 2014, v. 18, n. 2, p. 351, doi. 10.1007/s00792-013-0620-y

By:

Igarashi, Kensuke;
Kuwabara, Tomohiko

Publication type:

Article

PyCoMo: a python package for community metabolic model creation and analysis.

Published in:

Bioinformatics, 2024, v. 40, n. 4, p. 1, doi. 10.1093/bioinformatics/btae153

By:

Predl, Michael;
Mießkes, Marianne;
Rattei, Thomas;
Zanghellini, Jürgen

Publication type:

Article

Co-Culture of Gut Bacteria and Metabolite Extraction Using Fast Vacuum Filtration and Centrifugation.

Published in:

Methods & Protocols, 2024, v. 7, n. 5, p. 74, doi. 10.3390/mps7050074

By:

Guraka, Asha;
Duff, Richard;
Waldron, Joe;
Tripathi, Gyanendra;
Kermanizadeh, Ali

Publication type:

Article

Spatial organization in microbial range expansion emerges from trophic dependencies and successful lineages.

Published in:

Communications Biology, 2020, v. 3, n. 1, p. N.PAG, doi. 10.1038/s42003-020-01409-y

By:

Borer, Benedict;
Ciccarese, Davide;
Johnson, David;
Or, Dani

Publication type:

Article

Addition of Conductive Materials to Support Syntrophic Microorganisms in Anaerobic Digestion.

Published in:

Fermentation (Basel), 2022, v. 8, n. 8, p. 354, doi. 10.3390/fermentation8080354

By:

König, Roger;
Cuomo, Maurizio;
Pianta, Elisa;
Buetti, Antoine;
Mauri, Federica;
Tanadini, Matteo;
Principi, Pamela

Publication type:

Article

Scaling microbial biomass, metabolism and resource supply.

Published in:

Biogeochemistry, 2015, v. 122, n. 2-3, p. 175, doi. 10.1007/s10533-014-0058-z

By:

Sinsabaugh, Robert;
Shah, Jennifer;
Findlay, Stuart;
Kuehn, Kevin;
Moorhead, Daryl

Publication type:

Article

Evidence of Interdomain Ammonium Cross-Feeding From Methylamine- and Glycine Betaine-Degrading Rhodobacteraceae to Diatoms as a Widespread Interaction in the Marine Phycosphere.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.533894

By:

Zecher, Karsten;
Hayes, Kristiane Rebecca;
Philipp, Bodo

Publication type:

Article

Evidence of Spatial Homogeneity in an Electromethanogenic Cathodic Microbial Community.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01747

By:

Ragab, Ala'a;
Katuri, Krishna P.;
Ali, Muhammad;
Saikaly, Pascal E.

Publication type:

Article

Design of stable and self-regulated microbial consortia for chemical synthesis.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29215-6

By:

Li, Xianglai;
Zhou, Zhao;
Li, Wenna;
Yan, Yajun;
Shen, Xiaolin;
Wang, Jia;
Sun, Xinxiao;
Yuan, Qipeng

Publication type:

Article

Cross-feeding between intestinal pathobionts promotes their overgrowth during undernutrition.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27191-x

By:

Huus, K. E.;
Hoang, T. T.;
Creus-Cuadros, A.;
Cirstea, M.;
Vogt, S. L.;
Knuff-Janzen, K.;
Sansonetti, P. J.;
Vonaesch, P.;
Finlay, B. B.

Publication type:

Article

Geometric analysis of a model for cross‐feeding in the chemostat.

Published in:

Mathematical Methods in the Applied Sciences, 2018, v. 41, n. 18, p. 8765, doi. 10.1002/mma.5116

By:

Rashkov, Peter

Publication type:

Article

Fostering prevention and care delivery services capability on HIV pandemic and Ebola outbreak symbiosis in Africa.

Published in:

Journal of Infection in Developing Countries, 2016, v. 10, n. 1, p. 1, doi. 10.3855/jidc.6875

By:

Tambo, Ernest;
Yah, Clarence S.;
Ugwu, Chidiebere E.;
Olalubi, Oluwasogo A.;
Wurie, Isatta;
Jonhson, Jeannetta K.;
Ngogang, Jeanne Y.

Publication type:

Article

Substrate cross-feeding affects the speed and trajectory of molecular evolution within a synthetic microbial assemblage.

Published in:

BMC Evolutionary Biology, 2019, v. 19, n. 1, p. N.PAG, doi. 10.1186/s12862-019-1458-4

By:

Lilja, Elin E.;
Johnson, David R.

Publication type:

Article

Metabolic cross-feeding interactions modulate the dynamic community structure in microbial fuel cell under variable organic loading wastewaters.

Published in:

PLoS Computational Biology, 2024, v. 20, n. 10, p. 1, doi. 10.1371/journal.pcbi.1012533

By:

Srinak, Natchapon;
Chiewchankaset, Porntip;
Kalapanulak, Saowalak;
Panichnumsin, Pornpan;
Saithong, Treenut

Publication type:

Article

Beware batch culture: Seasonality and niche construction predicted to favor bacterial adaptive diversification.

Published in:

PLoS Computational Biology, 2017, v. 13, n. 3, p. 1, doi. 10.1371/journal.pcbi.1005459

By:

Rocabert, Charles;
Knibbe, Carole;
Consuegra, Jessika;
Schneider, Dominique;
Beslon, Guillaume

Publication type:

Article

Stability of Cross-Feeding Polymorphisms in Microbial Communities.

Published in:

PLoS Computational Biology, 2016, v. 12, n. 12, p. 1, doi. 10.1371/journal.pcbi.1005269

By:

Gudelj, Ivana;
Kinnersley, Margie;
Rashkov, Peter;
Schmidt, Karen;
Rosenzweig, Frank

Publication type:

Article

Combination of probiotics enhancing butyrogenesis in colonic microbiota model of patients with ulcerative colitis.

Published in:

Applied Microbiology & Biotechnology, 2025, v. 109, n. 1, p. 1, doi. 10.1007/s00253-025-13424-2

By:

Inokuma, Kentaro;
Sasaki, Daisuke;
Shintani, Tomoya;
Inoue, Jun;
Oyama, Katsuaki;
Noda, Yuta;
Maeda, Takayuki;
Yamada, Ryouichi;
Matsuki, Yasushi;
Kodama, Yuzo;
Kondo, Akihiko

Publication type:

Article

Co-Administration of Lactulose Crystals with Amoxicillin Followed by Prolonged Lactulose Treatment Promotes Recovery of the Human Gut Microbiome In Vitro.

Published in:

Antibiotics (2079-6382), 2022, v. 11, n. 7, p. 962, doi. 10.3390/antibiotics11070962

By:

Duysburgh, Cindy;
Van den Abbeele, Pieter;
Franckenstein, Dennis;
Westphal, Martin;
Kuchinka-Koch, Angelika;
Marzorati, Massimo

Publication type:

Article

Crystal structure of a putative 3‐hydroxypimelyl‐CoA dehydrogenase, Hcd1, from Syntrophus aciditrophicus strain SB at 1.78 Å resolution.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2023, v. 79, n. 6, p. 151, doi. 10.1107/S2053230X23004399

By:

Dinh, David M.;
Thomas, Leonard M.;
Karr, Elizabeth A.

Publication type:

Article

Syntrophy and Interspecies Electron Transfer in Methanogenic Microbial Communities.

Published in:

Microbiology (00262617), 2020, v. 89, n. 2, p. 129, doi. 10.1134/S0026261720020101

By:

Nozhevnikova, A. N.;
Russkova, Yu. I.;
Litti, Yu. V.;
Parshina, S. N.;
Zhuravleva, E. A.;
Nikitina, A. A.

Publication type:

Article

Eco-evolutionary modelling of microbial syntrophy indicates the robustness of cross-feeding over cross-facilitation.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-27421-w

By:

Boza, G.;
Barabás, G.;
Scheuring, I.;
Zachar, I.

Publication type:

Article

Mechanism for Utilization of the Populus -Derived Metabolite Salicin by a Pseudomonas — Rahnella Co-Culture.

Published in:

Metabolites (2218-1989), 2023, v. 13, n. 2, p. 140, doi. 10.3390/metabo13020140

By:

Dahal, Sanjeev;
Hurst, Gregory B.;
Chourey, Karuna;
Engle, Nancy L.;
Burdick, Leah H.;
Morrell-Falvey, Jennifer L.;
Tschaplinski, Timothy J.;
Doktycz, Mitchel J.;
Pelletier, Dale A.

Publication type:

Article

Construction of Environmental Synthetic Microbial Consortia: Based on Engineering and Ecological Principles.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.829717

By:

Liang, Yu;
Ma, Anzhou;
Zhuang, Guoqiang

Publication type:

Article

Microbial Systems Ecology to Understand Cross-Feeding in Microbiomes.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.780469

By:

Mataigne, Victor;
Vannier, Nathan;
Vandenkoornhuyse, Philippe;
Hacquard, Stéphane

Publication type:

Article

Overlapping Roles of Yeast Transporters Aqr1, Qdr2, and Qdr3 in Amino Acid Excretion and Cross-Feeding of Lactic Acid Bacteria.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.752742

By:

Kapetanakis, George C.;
Gournas, Christos;
Prévost, Martine;
Georis, Isabelle;
André, Bruno

Publication type:

Article

Competition for nutrients increases invasion resistance during assembly of microbial communities.

Published in:: Molecular Ecology, 2022, v. 31, n. 15, p. 4188, doi. 10.1111/mec.16565
Publication type:: Article

Effect of azithromycin and phenylalanine-arginine beta-naphthylamide on quorum sensing and virulence factors in clinical isolates of Pseudomonas aeruginosa.

Published in:

Iranian Journal of Microbiology, 2021, v. 13, n. 1, p. 37

By:

Elsheredy, Amel;
El-Soudany, Ingy;
Elsherbini, Eglal;
Metwally, Dalia;
Ghazal, Abeer

Publication type:

Article

Metabolic niches in the rhizosphere microbiome: new tools and approaches to analyse metabolic mechanisms of plant–microbe nutrient exchange.

Published in:

Journal of Experimental Botany, 2019, v. 70, n. 4, p. 1087, doi. 10.1093/jxb/ery438

By:

Jacoby, Richard P;
Kopriva, Stanislav

Publication type:

Article

Genome-Guided Analysis and Whole Transcriptome Profiling of the Mesophilic Syntrophic Acetate Oxidising Bacterium Syntrophaceticus schinkii.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166520

By:

Manzoor, Shahid;
Bongcam-Rudloff, Erik;
Schnürer, Anna;
Müller, Bettina

Publication type:

Article

Mutualistic interactions of lactate‐producing lactobacilli and lactate‐utilizing Veillonella dispar: Lactate and glutamate cross‐feeding for the enhanced growth and short‐chain fatty acid production.

Published in:

Microbial Biotechnology, 2024, v. 17, n. 5, p. 1, doi. 10.1111/1751-7915.14484

By:

Zhang, Shi‐Min;
Hung, Jia‐He;
Yen, Tran Ngoc;
Huang, Shir‐Ly

Publication type:

Article

Synthesis of C-H-O Symbiosis Networks.

Published in:

AIChE Journal, 2015, v. 61, n. 4, p. 1242, doi. 10.1002/aic.14714

By:

Noureldin, Mohamed M. B.;
El‐Halwagi, Mahmoud M.

Publication type:

Article

Lacticaseibacillus rhamnosus ATCC 53103 and Limosilactobacillus reuteri ATCC 53608 Synergistically Boost Butyrate Levels upon Tributyrin Administration Ex Vivo.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 6, p. 5859, doi. 10.3390/ijms24065859

By:

Van den Abbeele, Pieter;
Goggans, Mallory;
Deyaert, Stef;
Baudot, Aurélien;
Van de Vliet, Michiel;
Calatayud Arroyo, Marta;
Lelah, Michael

Publication type:

Article

Identification of Key Functions Required for Production and Utilization of the Siderophore Piscibactin Encoded by the High-Pathogenicity Island irp -HPI in Vibrionaceae.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 8865, doi. 10.3390/ijms23168865

By:

Lages, Marta A.;
Ageitos, Lucía;
Rodríguez, Jaime;
Jiménez, Carlos;
Lemos, Manuel L.;
Balado, Miguel

Publication type:

Article

Arabinoxylan and Pectin Metabolism in Crohn's Disease Microbiota: An In Silico Study.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 13, p. 7093, doi. 10.3390/ijms23137093

By:

Sabater, Carlos;
Calvete-Torre, Inés;
Ruiz, Lorena;
Margolles, Abelardo

Publication type:

Article

A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0950-y

By:

Marchal, Marie;
Goldschmidt, Felix;
Derksen-Müller, Selina N.;
Panke, Sven;
Ackermann, Martin;
Johnson, David R.

Publication type:

Article

Properly interpret metabolic inhibition results to identify primary mercury methylating microbes.

Published in:

Critical Reviews in Environmental Science & Technology, 2023, v. 53, n. 19, p. 1757, doi. 10.1080/10643389.2023.2183072

By:

Lei, Pei;
Yu, Ri-Qing;
Kong, Yaqi;
Bertilsson, Stefan;
Tsui, Martin Tsz-Ki;
Jiang, Tao;
Zhao, Jiating;
Liu, Yu-Rong;
Jörg, Rinklebe;
Zhong, Huan

Publication type:

Article

Syntrophy of bacteria and archaea in the anaerobic catabolism of hydrocarbon contaminants.

Published in:

Critical Reviews in Environmental Science & Technology, 2023, v. 53, n. 13, p. 1331, doi. 10.1080/10643389.2022.2134702

By:

Harindintwali, Jean Damascene;
Xiang, Leilei;
Wang, Fang;
Chang, Scott X.;
Zhao, Zhiliang;
Mei, Zhi;
Jia, Zhongjun;
Jiang, Xin;
Zhu, Yong-guan;
Tiedje, James M.

Publication type:

Article

Global dynamics of microbial communities emerge from local interaction rules.

Published in:

PLoS Computational Biology, 2022, v. 18, n. 3, p. 1, doi. 10.1371/journal.pcbi.1009877

By:

van Vliet, Simon;
Hauert, Christoph;
Fridberg, Kyle;
Ackermann, Martin;
Dal Co, Alma

Publication type:

Article