Works matching DE "STRUCTURAL proteomics"

Results: 56

Local Transient Unfolding of Native State PAI-1 Associated with Serpin Metastability.

Published in:

Angewandte Chemie, 2014, v. 126, n. 37, p. 9909, doi. 10.1002/ange.201402796

By:

Trelle, Morten B.;
Madsen, Jeppe B.;
Andreasen, Peter A.;
Jørgensen, Thomas J. D.

Publication type:

Article

Online interactive analysis of protein structure ensembles with Bio3D-web.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3510, doi. 10.1093/bioinformatics/btw482

By:

Skjærven, Lars;
Jariwala, Shashank;
Xin-Qiu Yao;
Grant, Barry J.

Publication type:

Article

Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 792, doi. 10.1093/bioinformatics/btv637

By:

Kaiser, Florian;
Eisold, Alexander;
Bittrich, Sebastian;
Labudde, Dirk

Publication type:

Article

UniAlign: protein structure alignment meets evolution.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3139, doi. 10.1093/bioinformatics/btv354

By:

Chunyu Zhao;
Sacan, Ahmet

Publication type:

Article

Detection of circular permutations within protein structures using CE-CP.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1316, doi. 10.1093/bioinformatics/btu823

By:

Bliven, Spencer E.;
Bourne, Philip E.;
Prlic, Andreas

Publication type:

Article

Molecular mechanisms of the effect of TGF-β1 on U87 human glioblastoma cells.

Published in:

Oncology Letters, 2016, v. 12, n. 2, p. 1581, doi. 10.3892/ol.2016.4756

By:

BRYUKHOVETSKIY, IGOR;
SHEVCHENKO, VALERIY

Publication type:

Article

Studying the Properties of Domain I of the Ribosomal Protein L1: Incorporation into Ribosome and Regulation of the L1 Operon Expression.

Published in:

Protein Journal, 2015, v. 34, n. 2, p. 103, doi. 10.1007/s10930-015-9602-5

By:

Korepanov, Alexey;
Kostareva, Olga;
Bazhenova, Maria;
Bubunenko, Mikhail;
Garber, Maria;
Tishchenko, Svetlana

Publication type:

Article

A Single Amino Acid in the Hinge Loop Region of the FOXP Forkhead Domain is Significant for Dimerisation.

Published in:

Protein Journal, 2015, v. 34, n. 2, p. 111, doi. 10.1007/s10930-015-9603-4

By:

Perumal, Kershia;
Dirr, Heini;
Fanucchi, Sylvia

Publication type:

Article

Structural Aspects of a Protein-Surfactant Assembly: Native and Reduced States of Human Serum Albumin.

Published in:

Protein Journal, 2015, v. 34, n. 2, p. 147, doi. 10.1007/s10930-015-9606-1

By:

Anand, Uttam;
Ray, Sutapa;
Ghosh, Subhadip;
Banerjee, Rajat;
Mukherjee, Saptarshi

Publication type:

Article

Proteomic analysis of differentially expressed proteins of Nicotiana benthamiana triggered by INF1 elicitin from Phytophthora infestans.

Published in:

Journal of General Plant Pathology, 2017, v. 83, n. 2, p. 66, doi. 10.1007/s10327-017-0699-6

By:

Du, Juan;
Guo, Xiao;
Chen, Lin;
Xie, Conghua;
Liu, Jun

Publication type:

Article

Retraction Note: Overestimated accuracy of circular dichroism in determining protein secondary structure.

Published in:

2014

By:

Lin, Kailei;
Yang, Huayan;
Gao, Zhengya;
Li, Feng;
Yu, Shaoning

Publication type:

Erratum

GIRAF: a method for fast search and flexible alignment of ligand binding interfaces in proteins at atomic resolution.

Published in:

Biophysics (13492942), 2012, v. 8, p. 79, doi. 10.2142/biophysics.8.79

By:

Akira R. Kinjo;
Haruki Nakamura

Publication type:

Article

Building a Better Fragment Library for De Novo Protein Structure Prediction.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0123998

By:

de Oliveira, Saulo H. P.;
Shi, Jiye;
Deane, Charlotte M.

Publication type:

Article

Comparison of the ‘Chemical’ and ‘Structural’ Approaches to the Optimization of the Thrombin-Binding Aptamer.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089383

By:

Tatarinova, Olga;
Tsvetkov, Vladimir;
Basmanov, Dmitry;
Barinov, Nikolay;
Smirnov, Igor;
Timofeev, Edward;
Kaluzhny, Dmitry;
Chuvilin, Andrey;
Klinov, Dmitry;
Varizhuk, Anna;
Pozmogova, Galina

Publication type:

Article

Comparison of the gene encoding, and the predicted amino acid composition of, platelet membrane receptor subunit glycoprotein Ibα in members of the family Felidae.

Published in:

Veterinary Clinical Pathology, 2016, v. 45, n. 1, p. 73, doi. 10.1111/vcp.12312

By:

Boudreaux, Mary K.;
Christopherson, Pete W.;
Blair, Cori

Publication type:

Article

A Plasmodium falciparum PHIST protein binds the virulence factor PfEMP1 and comigrates to knobs on the host cell surface.

Published in:

FASEB Journal, 2014, v. 28, n. 10, p. 4420, doi. 10.1096/fj.14-256057

By:

Oberli, Alexander;
Slater, Leanne M.;
Cutts, Erin;
Brand, Françoise;
Mundwiler-Pachlatko, Esther;
Rusch, Sebastian;
Masik, Martin F. G.;
Erat, Michèle C.;
Beck, Hans-Peter;
Vakonakis, Ioannis

Publication type:

Article

Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006859

By:

Brodie, Nicholas I.;
Popov, Konstantin I.;
Petrotchenko, Evgeniy V.;
Dokholyan, Nikolay V.;
Borchers, Christoph H.

Publication type:

Article

A new clustering and nomenclature for beta turns derived from high-resolution protein structures.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006844

By:

Shapovalov, Maxim;
Vucetic, Slobodan;
Jr.Dunbrack, Roland L.

Publication type:

Article

Reduced dimensionality (3,2)D NMR experiments and their automated analysis: implications to high-throughput structural studies on proteins.

Published in:

Magnetic Resonance in Chemistry, 2015, v. 53, n. 2, p. 79, doi. 10.1002/mrc.4135

By:

Reddy, Jithender G.;
Kumar, Dinesh;
Hosur, Ramakrishna V.

Publication type:

Article

Insights into the structure and architecture of the CCR4-NOT complex.

Published in:

Frontiers in Genetics, 2014, v. 5, p. 1, doi. 10.3389/fgene.2014.00137

By:

Kun Xu;
Yuwei Bai;
Aili Zhang;
Qionglin Zhang;
Bartlam, Mark G.

Publication type:

Article

Quantitative proteomics signature profiling based on network contextualization.

Published in:

Biology Direct, 2015, v. 10, p. 1, doi. 10.1186/s13062-015-0098-x

By:

Wilson Wen Bin Goh;
Guo, Tiannan;
Aebersold, Ruedi;
Limsoon Wong

Publication type:

Article

An interactomics overview of the human and bovine milk proteome over lactation.

Published in:

Proteome Science, 2017, p. 1, doi. 10.1186/s12953-016-0110-0

By:

Zhang, Lina;
van Dijk, Aalt D. J.;
Hettinga, Kasper

Publication type:

Article

Customised fragments libraries for protein structure prediction based on structural class annotations.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0576-2

By:

Abbass, Jad;
Nebel, Jean-Christophe

Publication type:

Article

Capturing protein communities by structural proteomics in a thermophilic eukaryote.

Published in:

Molecular Systems Biology, 2017, v. 13, n. 7, p. n/a, doi. 10.15252/msb.20167412

By:

Kastritis, Panagiotis L;
O'Reilly, Francis J;
Bock, Thomas;
Li, Yuanyue;
Rogon, Matt Z;
Buczak, Katarzyna;
Romanov, Natalie;
Betts, Matthew J;
Bui, Khanh Huy;
Hagen, Wim J;
Hennrich, Marco L;
Mackmull, Marie‐Therese;
Rappsilber, Juri;
Russell, Robert B;
Bork, Peer;
Beck, Martin;
Gavin, Anne‐Claude

Publication type:

Article

In-silico scrutiny of cumin (Cuminum cyminum L.) protein structure-GQ 33.

Published in:

Research on Crops, 2014, v. 15, n. 3, p. 705, doi. 10.5958/2348-7542.2014.01400.4

By:

CHOUDHARY, SHARDA;
JETHRA, GEETIKA;
MEENA, R. S.

Publication type:

Article

Knowledge-based prediction of protein backbone conformation using a structural alphabet.

Published in:

PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0186215

By:

Vetrivel, Iyanar;
Mahajan, Swapnil;
Tyagi, Manoj;
Hoffmann, Lionel;
Sanejouand, Yves-Henri;
Srinivasan, Narayanaswamy;
De Brevern, Alexandre G.;
Cadet, Frédéric;
Offmann, Bernard

Publication type:

Article

The Strength of Family Ties: Perceptions of Network Relationship Quality and Levels of C-Reactive Proteins in the North Texas Heart Study.

Published in:

2015

By:

Uchino, Bert;
Ruiz, John;
Smith, Timothy;
Smyth, Joshua;
Taylor, Daniel;
Allison, Matthew;
Ahn, Chul

Publication type:

Report

Assessing protein conformational sampling methods based on bivariate lag-distributions of backbone angles.

Published in:

Briefings in Bioinformatics, 2013, v. 14, n. 6, p. 724, doi. 10.1093/bib/bbs052

By:

Maadooliat, Mehdi;
Gao, Xin;
Huang, Jianhua Z.

Publication type:

Article

A Structure-Based Classification and Analysis of Protein Domain Family Binding Sites and Their Interactions.

Published in:

Biology (2079-7737), 2015, v. 4, n. 2, p. 327, doi. 10.3390/biology4020327

By:

Ghoorah, Anisah W.;
Devignes, Marie-Dominique;
Alborzi, Seyed Ziaeddin;
Smaïl-Tabbone, Malika;
Ritchie, David W.

Publication type:

Article

Structural and mechanistic aspects influencing the ADAM10-mediated shedding of the prion protein.

Published in:

Molecular Neurodegeneration, 2018, v. 13, n. 1, p. 1, doi. 10.1186/s13024-018-0248-6

By:

Linsenmeier, Luise;
Mohammadi, Behnam;
Wetzel, Sebastian;
Puig, Berta;
Jackson, Walker S.;
Hartmann, Alexander;
Uchiyama, Keiji;
Sakaguchi, Suehiro;
Endres, Kristina;
Tatzelt, Jörg;
Saftig, Paul;
Glatzel, Markus;
Altmeppen, Hermann C.

Publication type:

Article

Lessons from making the Structural Classification of Proteins (SCOP) and their implications for protein structure modelling.

Published in:

Biochemical Society Transactions, 2016, v. 44, n. 3, p. 937, doi. 10.1042/BST20160053

By:

Andreeva, Antonina

Publication type:

Article

An integrated structural proteomics approach along the druggable genome of Corynebacterium pseudotuberculosis species for putative druggable targets.

Published in:

BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S5-S9

By:

Radusky, Leandro G.;
Hassan, Syed Shah;
Lanzarotti, Esteban;
Tiwari, Sandeep;
Jamal, Syed Babar;
Ali, Javed;
Ali, Amjad;
Ferreira, Rafaela Salgado;
Barh, Debmalya;
Silva, Artur;
Turjanski, Adrián G.;
Azevedo, Vasco A. C.

Publication type:

Article

Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pcbi.1003239

By:

Song, Jianhui;
Ng, Sheung Chun;
Tompa, Peter;
Lee, Kevin A. W.;
Chan, Hue Sun

Publication type:

Article

Using a commodity high-definition television for collaborative structural biology.

Published in:

Journal of Applied Crystallography, 2014, v. 47, n. 3, p. 1153, doi. 10.1107/S160057671400939X

By:

Yennamalli, Ragothaman;
Arangarasan, Raj;
Bryden, Aaron;
Gleicher, Michael;
Phillips Jr, George N.

Publication type:

Article

Chemical biology: Proteome labels à la carte.

Published in:

Nature Methods, 2014, v. 11, n. 6, p. 614, doi. 10.1038/nmeth.2991

By:

Jarchum, Irene

Publication type:

Article

Role of nephrin phosphorylation inducted by dexamethasone and angiotensin II in podocytes.

Published in:

Molecular Biology Reports, 2014, v. 41, n. 6, p. 3591, doi. 10.1007/s11033-014-3222-6

By:

Yu, Meng;
Ren, Qi;
Yu, S.

Publication type:

Article

Amino acids modulates the intestinal proteome associated with immune and stress response in weaning pig.

Published in:

Molecular Biology Reports, 2014, v. 41, n. 6, p. 3611, doi. 10.1007/s11033-014-3225-3

By:

Ren, Man;
Liu, Chuang;
Zeng, Xiangfang;
Yue, Longyao;
Mao, Xiangbing;
Qiao, Shiyan;
Wang, Junjun

Publication type:

Article

Structural Proteomics of Herpesviruses.

Published in:

Viruses (1999-4915), 2016, v. 8, n. 2, p. 50, doi. 10.3390/v8020050

By:

Leroy, Baptiste;
Gillet, Laurent;
Vanderplasschen, Alain;
Wattiez, Ruddy

Publication type:

Article

TAKING SNAPSHOTS OF ATOMIC MOTION USING ELECTRONS.

Published in:

Europhysics News, 2015, v. 46, n. 2, p. 21, doi. 10.1051/epn/2015203

By:

Luiten, Jom

Publication type:

Article

Students' understanding of primary and secondary protein structure: Drawing secondary protein structure reveals student understanding better than simple recognition of structures.

Published in:

Biochemistry & Molecular Biology Education, 2013, v. 41, n. 6, p. 369, doi. 10.1002/bmb.20719

By:

Harle, Marissa;
Towns, Marcy H.

Publication type:

Article

Comparison study on statistical features of predicted secondary structures for protein structural class prediction: From content to position.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-152

By:

Qi Dai;
Yan Li;
Xiaoqing Liu;
Yuhua Yao;
Yunjie Cao;
Pingan He

Publication type:

Article

Effects of Modified Processing Methods on Structural Changes of Black Soybean Protein Isolate.

Published in:

Molecules, 2018, v. 23, n. 9, p. 2127, doi. 10.3390/molecules23092127

By:

Yinglei Zhang;
Yanyang Yin;
Shuwen Lu;
Xinmiao Yao;
Xianzhe Zheng;
Rui Zhao;
Zhebin Li;
Huifang Shen;
Shouwen Zhang

Publication type:

Article

From Extraction of Local Structures of Protein Energy Landscapes to Improved Decoy Selection in Template-Free Protein Structure Prediction.

Published in:

Molecules, 2018, v. 23, n. 1, p. 216, doi. 10.3390/molecules23010216

By:

Akhter, Nasrin;
Shehu, Amarda

Publication type:

Article

Systematic Identification of Machine-Learning Models Aimed to Classify Critical Residues for Protein Function from Protein Structure.

Published in:

Molecules, 2017, v. 22, n. 10, p. 1673, doi. 10.3390/molecules22101673

By:

Corral-Corral, Ricardo;
Beltrán, Jesús A.;
Brizuela, Carlos A.;
Del Rio, Gabriel

Publication type:

Article

Combining co-evolution and secondary structure prediction to improve fragment library generation.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. 2219, doi. 10.1093/bioinformatics/bty084

By:

Oliveira, Saulo H P de;
Deane, Charlotte M

Publication type:

Article

Ekmeklik Buğday (Triticum aestivum L.) Çeşitlerinde Protein Oranının Üç Farklı Analiz Yöntemine Göre Karşılaştırılması Üzerine Bir Araştırma.

Published in:

Journal of the Faculty of Agriculture / Ziraat Fakültesi Dergisi, 2013, v. 8, n. 2, p. 80

By:

OLGUNI, Murat;
BUDAK BAŞÇİFTÇİ, Zekiye;
AYTER, N. Gözde;
KUTLUf, İmren;
AKIN, Arzu;
KARADUMAN, Yaşar

Publication type:

Article

Hydrogen-bond network and pH sensitivity in human transthyretin.

Published in:

Journal of Synchrotron Radiation, 2013, v. 20, n. 6, p. 834, doi. 10.1107/S090904951302075X

By:

Yokoyama, Takeshi;
Mizuguchi, Mineyuki;
Nabeshima, Yuko;
Kusaka, Katsuhiro;
Yamada, Taro;
Hosoya, Takaaki;
Ohhara, Takashi;
Kurihara, Kazuo;
Tanaka, Ichiro;
Niimura, Nobuo

Publication type:

Article

Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid.

Published in:

Journal of Synchrotron Radiation, 2013, v. 20, n. 6, p. 923, doi. 10.1107/S0909049513021298

By:

Hirose, Mika;
Sugiyama, Shigeru;
Ishida, Hanako;
Niiyama, Mayumi;
Matsuoka, Daisuke;
Hara, Toshiaki;
Mizohata, Eiichi;
Murakami, Satoshi;
Inoue, Tsuyoshi;
Matsuoka, Shigeru;
Murata, Michio

Publication type:

Article

New Developments in Protein Structure Modelling for Biological and Clinical Research.

Published in:

Biochemical Society Transactions, 2016, v. 44, n. 4, p. 973, doi. 10.1042/BST20160074

By:

Michaelis, Martin;
Rossman, Jeremy S.;
Wass, Mark N.

Publication type:

Article

Predicting protein-ligand binding residues with deep convolutional neural networks.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2672-1

By:

Cui, Yifeng;
Dong, Qiwen;
Hong, Daocheng;
Wang, Xikun

Publication type:

Article