Works matching DE "STRUCTURAL genomics"

Results: 109

Tailored Hydrogel Membranes for Efficient Protein Crystallization.

Published in:

Advanced Functional Materials, 2014, v. 24, n. 11, p. 1582, doi. 10.1002/adfm.201302240

By:

Profio, Gianluca Di;
Polino, Mariella;
Nicoletta, Fiore P.;
Belviso, Benny D.;
Caliandro, Rocco;
Fontananova, Enrica;
Filpo, Giovanni De;
Curcio, Efrem;
Drioli, Enrico

Publication type:

Article

Consideration of mobile DNA: new forms of artificial genetic regulatory networks.

Published in:

Natural Computing, 2013, v. 12, n. 4, p. 443, doi. 10.1007/s11047-013-9369-6

By:

Bull, Larry

Publication type:

Article

A gene cluster for the biosynthesis of moenomycin family antibiotics in the genome of teicoplanin producer Actinoplanes teichomyceticus.

Published in:

Applied Microbiology & Biotechnology, 2016, v. 100, n. 17, p. 7629, doi. 10.1007/s00253-016-7685-3

By:

Horbal, Liliya;
Ostash, Bohdan;
Luzhetskyy, Andriy;
Walker, Suzanne;
Kalinowski, Jorn;
Fedorenko, Victor

Publication type:

Article

Mating structures for genomic selection breeding programs in aquaculture.

Published in:

Genetics Selection Evolution, 2016, v. 48, p. 1, doi. 10.1186/s12711-016-0224-y

By:

Sonesson, Anna K.;
Ødegård, Jørgen

Publication type:

Article

Potential applications of next generation sequencing to the genomics of Posidonia oceanica.

Published in:

2012

By:

Cavallini, Andrea;
Natali, Lucia;
Giordani, Tommaso

Publication type:

Opinion

ClC Channels and Transporters: Structure, Physiological Functions, and Implications in Human Chloride Channelopathies.

Published in:

Frontiers in Pharmacology, 2017, v. 8, p. 1, doi. 10.3389/fphar.2017.00151

By:

Poroca, Diogo R.;
Pelis, Ryan M.;
Chappe, Valérie M.

Publication type:

Article

Adaptive potential of genomic structural variation in human and mammalian evolution.

Published in:

Briefings in Functional Genomics, 2015, v. 14, n. 5, p. 258, doi. 10.1093/bfgp/elv019

By:

Radke, David W.;
Charles Lee

Publication type:

Article

A decade of structural variants: description, history and methods to detect structural variation.

Published in:

Briefings in Functional Genomics, 2015, v. 14, n. 5, p. 305, doi. 10.1093/bfgp/elv014

By:

Escaramís, Geòrgia;
Docampo, Elisa;
Rabionet, Raquel

Publication type:

Article

Repeat elements organise 3D genome structure and mediate transcription in the filamentous fungus Epichloë festucae.

Published in:

PLoS Genetics, 2018, v. 14, n. 10, p. 1, doi. 10.1371/journal.pgen.1007467

By:

Winter, David J.;
Ganley, Austen R. D.;
Young, Carolyn A.;
Liachko, Ivan;
Schardl, Christopher L.;
Dupont, Pierre-Yves;
Berry, Daniel;
Ram, Arvina;
Scott, Barry;
Cox, Murray P.

Publication type:

Article

Molecular Characterization of Ethylene-Regulated Anthocyanin Biosynthesis in Plums During Fruit Ripening.

Published in:

Plant Molecular Biology Reporter, 2016, v. 34, n. 4, p. 777, doi. 10.1007/s11105-015-0963-x

By:

Cheng, Yudou;
Liu, Liqin;
Yuan, Can;
Guan, Junfeng

Publication type:

Article

Therapeutics discovery: From bench to first in-human trials.

Published in:

2018

By:

Al-Hujaily, Ensaf M.;
Khatlani, Tanvir;
Alehaideb, Zeyad;
Ali, Rizwan;
Almuzaini, Bader;
Alrfaei, Bahauddeen M;
Iqbal, Jahangir;
Islam, Imadul;
Malik, Shuja;
Marwani, Bader A;
Massadeh, Salam;
Nehdi, Atef;
Alsomaie, Barrak;
Debasi, Bader;
Bushnak, Ibraheem;
Noibi, Saeed;
Hussain, Syed;
Wajid, Wahid Abdul;
Armand, Jean-Pierre;
Gul, Sheraz

Publication type:

Proceeding

Structural genomic variation in childhood epilepsies with complex phenotypes.

Published in:

European Journal of Human Genetics, 2014, v. 22, n. 7, p. 896, doi. 10.1038/ejhg.2013.262

By:

Helbig, Ingo;
Swinkels, Marielle E M;
Aten, Emmelien;
Caliebe, Almuth;
van 't Slot, Ruben;
Boor, Rainer;
von Spiczak, Sarah;
Muhle, Hiltrud;
Jähn, Johanna A;
van Binsbergen, Ellen;
van Nieuwenhuizen, Onno;
Jansen, Floor E;
Braun, Kees P J;
de Haan, Gerrit-Jan;
Tommerup, Niels;
Stephani, Ulrich;
Hjalgrim, Helle;
Poot, Martin;
Lindhout, Dick;
Brilstra, Eva H

Publication type:

Article

Genome-wide marker-trait association analysis in a core set of Dolichos bean germplasm.

Published in:

Plant Genetic Resources: Characterisation & Utilisation, 2019, v. 17, n. 1, p. 1, doi. 10.1017/S1479262118000163

By:

Vaijayanthi, P. V.;
Ramesh, S.;
Gowda, M. B.;
Rao, A. M.;
Keerthi, C. M.

Publication type:

Article

Crystal Structure Analysis of a Recombinant Predicted Acetamidase/Formamidase from the Thermophile Thermoanaerobacter tengcongensis.

Published in:

Protein Journal, 2012, v. 31, n. 2, p. 166, doi. 10.1007/s10930-011-9387-0

By:

Qian, Minxie;
Huang, Qichen;
Wu, Guangteng;
Lai, Luhua;
Tang, Youqi;
Pei, Jianfeng;
Kusunoki, Masami

Publication type:

Article

Codon usage of HIV regulatory genes is not determined by nucleotide composition.

Published in:

Archives of Virology, 2018, v. 163, n. 2, p. 337, doi. 10.1007/s00705-017-3597-5

By:

Phakaratsakul, Supinya;
Sirihongthong, Thanyaporn;
Boonarkart, Chompunuch;
Suptawiwat, Ornpreya;
Auewarakul, Prasert

Publication type:

Article

Common Stress Transcriptome Analysis Reveals Functional and Genomic Architecture Differences Between Early and Delayed Response Genes.

Published in:

Plant & Cell Physiology, 2017, v. 58, n. 3, p. 546, doi. 10.1093/pcp/pcx002

By:

Chung-Wen Lin;
Li-Yao Huang;
Chao-Li Huang;
Yong-Chuan Wang;
Pei-Hsuan Lai;
Hao-Ven Wang;
Wen-Chi Chang;
Tzen-Yuh Chiang;
Hao-Jen Huang

Publication type:

Article

The bovine CD1D gene has an unusual gene structure and is expressed but cannot present α-galactosylceramide with a C26 fatty acid.

Published in:

International Immunology, 2013, v. 25, n. 2, p. 91, doi. 10.1093/intimm/dxs092

By:

Nguyen, Thi Kim Anh;
Koets, Ad P.;
Vordermeier, Martin;
Jervis, Peter J.;
Cox, Liam R.;
Graham, Simon P.;
Santema, Wiebren J.;
Moody, D. Branch;
van Calenbergh, Serge;
Zajonc, Dirk M.;
Besra, Gurdyal S.;
Van Rhijn, Ildiko

Publication type:

Article

Structural genomic alterations in primary mediastinal large B-cell lymphoma.

Published in:

Leukemia & Lymphoma, 2015, v. 56, n. 8, p. 2239, doi. 10.3109/10428194.2014.985673

By:

Twa, David D. W.;
Steidl, Christian

Publication type:

Article

FaMYB44.2, a transcriptional repressor, negatively regulates sucrose accumulation in strawberry receptacles through interplay with FaMYB10.

Published in:

Journal of Experimental Botany, 2018, v. 69, n. 20, p. 4805, doi. 10.1093/jxb/ery249

By:

Wei, Lingzhi;
Mao, Wenwen;
Jia, Meiru;
Xing, Sinian;
Ali, Usman;
Zhao, Yaoyao;
Chen, Yating;
Cao, Minglin;
Dai, Zhengrong;
Zhang, Kai

Publication type:

Article

Rapid Evolutionary Dynamics of Structural Disorder as a Potential Driving Force for Biological Divergence in Flaviviruses.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 3, p. 504, doi. 10.1093/gbe/evt026

By:

Ortiz, Juan F.;
MacDonald, Madolyn L.;
Masterson, Patrick;
Uversky, Vladimir N.;
Siltberg-Liberles, Jessica

Publication type:

Article

Codons Support the Maintenance of Intrinsic DNA Polymer Flexibility over Evolutionary Timescales.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 954, doi. 10.1093/gbe/evs073

By:

Babbitt, G. A.;
Schulze, K. V.

Publication type:

Article

Structural features and thermal stability of shrimp 14-3-3ε.

Published in:

Songklanakarin Journal of Science & Technology, 2017, v. 39, n. 4, p. 531

By:

Chutintorn Chauywong;
Sasithorn Boonprakong;
Amornrat Phongdara;
Warapond Wanna

Publication type:

Article

The Pekin duck programmed death-ligand 1: cDNA cloning, genomic structure, molecular characterization and mRNA expression analysis.

Published in:

International Journal of Immunogenetics, 2015, v. 42, n. 2, p. 111, doi. 10.1111/iji.12175

By:

Yao, Q.;
Fischer, K. P.;
Tyrrell, D. L.;
Gutfreund, K. S.

Publication type:

Article

Characterization of an anti-listerial enterocin from wheat silage based Enterococcus faecium.

Published in:

Journal of Basic Microbiology, 2012, v. 52, n. 5, p. 496, doi. 10.1002/jobm.201100235

By:

Bal, Emel Banu Buyukunal;
Isevi, Taner;
Bal, Mehmet Ali

Publication type:

Article

Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.

Published in:

Nature Reviews Genetics, 2015, v. 16, n. 5, p. 285, doi. 10.1038/nrg3883

By:

Koenig, Daniel;
Weigel, Detlef

Publication type:

Article

On the dynamical incompleteness of the Protein Data Bank.

Published in:

Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 356, doi. 10.1093/bib/bbx084

By:

Marino-Buslje, Cristina;
Monzon, Alexander Miguel;
Zea, Diego Javier;
Fornasari, María Silvina;
Parisi, Gustavo

Publication type:

Article

Critical evaluation of bioinformatics tools for the prediction of protein crystallization propensity.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 5, p. 838, doi. 10.1093/bib/bbx018

By:

Wang, Huilin;
Feng, Liubin;
Webb, Geoffrey I;
Kurgan, Lukasz;
Song, Jiangning;
Lin, Donghai

Publication type:

Article

Advances in computational approaches for prioritizing driver mutations and significantly mutated genes in cancer genomes.

Published in:

Briefings in Bioinformatics, 2016, v. 17, n. 4, p. 642, doi. 10.1093/bib/bbv068

By:

Feixiong Cheng;
Junfei Zhao;
Zhongming Zhao

Publication type:

Article

Diurnal regulation of the floral scent emission by light and circadian rhythm in the Phalaenopsis orchids.

Published in:

Botanical Studies, 2017, v. 58, n. 1, p. 1, doi. 10.1186/s40529-017-0204-8

By:

Chuang, Yu-Chen;
Lee, Ming-Chi;
Chang, Ya-Lan;
Chen, Wen-Huei;
Chen, Hong-Hwa

Publication type:

Article

SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications.

Published in:

Bioinformatics, 2019, v. 35, n. 2, p. 349, doi. 10.1093/bioinformatics/bty549

By:

Damerell, David R;
Strain-Damerell, Claire;
Garsot, Sefa;
Joyce, Stephen P;
Barrett, Paul;
Marsden, Brian D

Publication type:

Article

SVmine improves structural variation detection by integrative mining of predictions from multiple algorithms.

Published in:

Bioinformatics, 2017, v. 33, n. 21, p. 3348, doi. 10.1093/bioinformatics/btx455

By:

Yuchao Xia;
Yun Liu;
Minghua Deng;
Ruibin Xi

Publication type:

Article

Breakpoint Surveyor: a pipeline for structural variant visualization.

Published in:

Bioinformatics, 2017, v. 33, n. 19, p. 3121, doi. 10.1093/bioinformatics/btx362

By:

Wyczalkowski, Matthew A.;
Wylie, Kristine M.;
Song Cao;
McLellan, Michael D.;
Flynn, Jennifer;
Mo Huang;
Kai Ye;
Xian Fan;
Ken Chen;
Wendl, Michael C.;
Li Ding

Publication type:

Article

Correlated mutations select misfolded from properly folded proteins.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1497, doi. 10.1093/bioinformatics/btx013

By:

Wozniak, P. P.;
Vriend, G.;
Kotulska, M.

Publication type:

Article

WALT: fast and accurate read mapping for bisulfite sequencing.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3507, doi. 10.1093/bioinformatics/btw490

By:

Haifeng Chen;
Smith, Andrew D.;
Ting Chen

Publication type:

Article

FREGAT: an R package for region-based association analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 15, p. 2392, doi. 10.1093/bioinformatics/btw160

By:

Belonogova, Nadezhda M.;
Svishcheva, Gulnara R.;
Axenovich, Tatiana I.

Publication type:

Article

Fit3D: a web application for highly accurate screening of spatial residue patterns in protein structure data.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 792, doi. 10.1093/bioinformatics/btv637

By:

Kaiser, Florian;
Eisold, Alexander;
Bittrich, Sebastian;
Labudde, Dirk

Publication type:

Article

PHYLUCE is a software package for the analysis of conserved genomic loci.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 786, doi. 10.1093/bioinformatics/btv646

By:

Faircloth, Brant C.

Publication type:

Article

The discordant method: a novel approach for differential correlation.

Published in:

Bioinformatics, 2016, v. 32, n. 5, p. 690, doi. 10.1093/bioinformatics/btv633

By:

Siska, Charlotte;
Bowler, Russell;
Kechris, Katerina

Publication type:

Article

LIBRA: LIgand Binding site Recognition Application.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 4020, doi. 10.1093/bioinformatics/btv489

By:

Hung, Le Viet;
Caprari, Silvia;
Bizai, Massimiliano;
Toti, Daniele;
Polticelli, Fabio

Publication type:

Article

Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 3930, doi. 10.1093/bioinformatics/btv486

By:

Martiny, Virginie Y.;
Carbonell, Pablo;
Chevillard, Florent;
Moroy, Gautier;
Nicot, Arnaud B.;
Vayer, Philippe;
Villoutreix, Bruno O.;
Miteva, Maria A.

Publication type:

Article

Learning directed acyclic graphical structures with genetical genomics data.

Published in:

Bioinformatics, 2015, v. 31, n. 24, p. 3953, doi. 10.1093/bioinformatics/btv513

By:

Bin Gao;
Yuehua Cui

Publication type:

Article

HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3850, doi. 10.1093/bioinformatics/btv441

By:

Jinchao Yu;
Picord, Geraldine;
Tuffery, Pierre;
Guerois, Raphael

Publication type:

Article

Detecting differential protein expression in large-scale population proteomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2741, doi. 10.1093/bioinformatics/btu341

By:

Ryu, So Young;
Qian, Wei-Jun;
Camp, David G.;
Smith, Richard D.;
Tompkins, Ronald G.;
Davis, Ronald W.;
Xiao, Wenzhong

Publication type:

Article

Network-guided regression for detecting associations between DNA methylation and gene expression.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2693, doi. 10.1093/bioinformatics/btu361

By:

Wang, Zi;
Curry, Edward;
Montana, Giovanni

Publication type:

Article

Cloud4Psi: cloud computing for 3D protein structure similarity searching.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2822, doi. 10.1093/bioinformatics/btu389

By:

Mrozek, Dariusz;
Małysiak-Mrozek, Bożena;
Kłapciński, Artur

Publication type:

Article

Challenges in RNA virus bioinformatics.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1793, doi. 10.1093/bioinformatics/btu105

By:

Marz, Manja;
Beerenwinkel, Niko;
Drosten, Christian;
Fricke, Markus;
Frishman, Dmitrij;
Hofacker, Ivo L.;
Hoffmann, Dieter;
Middendorf, Martin;
Rattei, Thomas;
Stadler, Peter F.;
Töpfer, Armin

Publication type:

Article

ASSIST: a fast versatile local structural comparison tool.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1022, doi. 10.1093/bioinformatics/btt664

By:

Caprari, Silvia;
Toti, Daniele;
Viet Hung, Le;
Di Stefano, Maurizio;
Polticelli, Fabio

Publication type:

Article

PAVIS: a tool for Peak Annotation and Visualization.

Published in:

Bioinformatics, 2013, v. 29, n. 23, p. 3097, doi. 10.1093/bioinformatics/btt520

By:

Huang, Weichun;
Loganantharaj, Rasiah;
Schroeder, Bryce;
Fargo, David;
Li, Leping

Publication type:

Article

Pipit: visualizing functional impacts of structural variations.

Published in:

Bioinformatics, 2013, v. 29, n. 17, p. 2206, doi. 10.1093/bioinformatics/btt367

By:

Sakai, Ryo;
Moisse, Matthieu;
Reumers, Joke;
Aerts, Jan

Publication type:

Article

Preclinical target validation using patient-derived cells.

Published in:

Nature Reviews Drug Discovery, 2015, v. 14, n. 3, p. 149, doi. 10.1038/nrd4565

By:

Edwards, Aled M.;
Arrowsmith, Cheryl H.;
Bountra, Chas;
Bunnage, Mark E.;
Feldmann, Marc;
Knight, Julian C.;
Patel, Dhavalkumar D.;
Prinos, Panagiotis;
Taylor, Michael D.;
Sundström, Michael;
Barker, Phil;
Barsyte, Dalia;
Bengtson, Mario H.;
Bell, Cindy;
Bowness, Paul;
Boycott, Kym M.;
Buser-Doepner, Carolyn;
Carpenter, Christopher L.;
Carr, Andrew J.;
Clark, Kirk

Publication type:

Article