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Identification of type VI secretion system effector-immunity pairs using structural bioinformatics.
- Published in:
- Molecular Systems Biology, 2024, v. 20, n. 6, p. 702, doi. 10.1038/s44320-024-00035-8
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Bioinformatics approach for structure modeling, vaccine design, and molecular docking of Brucella candidate proteins BvrR, OMP25, and OMP31.
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- Scientific Reports, 2024, p. 1, doi. 10.1038/s41598-024-61991-7
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- Article
Deep learning in structural bioinformatics: current applications and future perspectives.
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- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae042
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- Article
Molecular Dynamics Simulation of Kir6.2 Variants Reveals Potential Association with Diabetes Mellitus.
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- Molecules, 2024, v. 29, n. 8, p. 1904, doi. 10.3390/molecules29081904
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- Article
Structural bioinformatics studies of glutamate transporters and their AlphaFold2 predicted water-soluble QTY variants and uncovering the natural mutations of L->Q, I->T, F->Y and Q->L, T->I and Y->F.
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- PLoS ONE, 2024, v. 19, n. 4, p. 1, doi. 10.1371/journal.pone.0289644
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- Article
An in-silico analysis of OGT gene association with diabetes mellitus.
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- BMC Research Notes, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13104-024-06744-5
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Uncovering structural themes across cilia microtubule inner proteins with implications for human cilia function.
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- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46737-3
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- Article
The Role of Structural Bioinformatics in Understanding Tumor Necrosis Factor α-Interacting Protein Mechanisms in Chronic Inflammatory Diseases: A Review.
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- Immuno, 2024, v. 4, n. 1, p. 14, doi. 10.3390/immuno4010002
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In silico analysis of the structural and functional characterization of the phosphorus-starvation tolerance 1 (PSTOL1) gene.
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- Turkish Journal of Agriculture & Forestry, 2024, v. 48, n. 2, p. 169, doi. 10.55730/1300-011X.3172
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- Article
Recent Progress of Protein Tertiary Structure Prediction.
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- Molecules, 2024, v. 29, n. 4, p. 832, doi. 10.3390/molecules29040832
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- Article
Prop3D: A flexible, Python-based platform for machine learning with protein structural properties and biophysical data.
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- BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-023-05586-5
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- Article
Structural Outlier Detection and Zernike–Canterakis Moments for Molecular Surface Meshes—Fast Implementation in Python.
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- Molecules, 2024, v. 29, n. 1, p. 52, doi. 10.3390/molecules29010052
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- Article
Know-how of holding a Bioinformatics competition: Structure, model, overview, and perspectives.
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- PLoS Computational Biology, 2023, v. 19, n. 12, p. 1, doi. 10.1371/journal.pcbi.1011679
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- Article
Interactions of Nucleosomes with Acidic Patch-Binding Peptides: A Combined Structural Bioinformatics, Molecular Modeling, Fluorescence Polarization, and Single-Molecule FRET Study.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 20, p. 15194, doi. 10.3390/ijms242015194
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Molecular Basis of Host-Virus Interactions to Explain Relative Transmission and Severity Caused by Omicron and Delta variants of SARS-CoV-2.
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- Journal of Pure & Applied Microbiology, 2023, v. 17, n. 3, p. 1612, doi. 10.22207/JPAM.17.3.22
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Advances in protein subunit vaccines against tuberculosis.
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- Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1238586
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- Article
Structural bioinformatics studies of bacterial outer membrane beta-barrel transporters and their AlphaFold2 predicted water-soluble QTY variants.
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- PLoS ONE, 2023, v. 18, n. 8, p. 1, doi. 10.1371/journal.pone.0290360
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- Article
Facilitating the drug repurposing with iC/E strategy: A practice on novel nNOS inhibitor discovery.
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- Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 4, p. 1, doi. 10.1142/S021972002350018X
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- Article
赤水乌骨鸡 PPP3CA 基因多态性与生长性状关联分析.
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- Southwest China Journal of Agricultural Sciences, 2023, v. 36, n. 7, p. 1547, doi. 10.16213/j.cnki.scjas.2023.7.023
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BeEM: fast and faithful conversion of mmCIF format structure files to PDB format.
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- BMC Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12859-023-05388-9
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- Article
AlphaFold2 Update and Perspectives.
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- BioMedInformatics, 2023, v. 3, n. 2, p. 378, doi. 10.3390/biomedinformatics3020025
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- Article
Comparative In Silico Analysis and Functional Characterization of TANK-Binding Kinase 1–Binding Protein 1.
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- Bioinformatics & Biology Insights, 2023, p. 1, doi. 10.1177/11779322231164828
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- Article
Structural Bioinformatics Study of the Structural Basis of Substrate Specificity of Purine Nucleoside Phosphorylase from Thermus thermophilus.
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- Crystallography Reports, 2023, v. 68, n. 2, p. 280, doi. 10.1134/S1063774523010108
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Bioinformatics analysis of structural protein to approach a vaccine candidate against Vibrio cholerae infection.
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- Immunogenetics, 2023, v. 75, n. 2, p. 99, doi. 10.1007/s00251-022-01282-5
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- Article
High Pathogenicity Island (HPI) Main Structural Genes and their Bioinformatics Analysis in Clinically Isolated E. coli from Saba Pigs.
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- Pakistan Journal of Zoology, 2023, v. 55, n. 2, p. 743, doi. 10.17582/journal.pjz/20200625160645
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- Article
Editorial: Special Issue "Protein Modeling and Simulation: Selected Articles from the Computational Structural Bioinformatics Workshop 2021".
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- Biomolecules (2218-273X), 2023, v. 13, n. 3, p. 408, doi. 10.3390/biom13030408
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- Article
Secrets behind Protein Sequences: Unveiling the Potential Reasons for Varying Allergenicity Caused by Caseins from Cows, Goats, Camels, and Mares Based on Bioinformatics Analyses.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 3, p. 2481, doi. 10.3390/ijms24032481
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- Article
Leveraging scaffold information to predict protein–ligand binding affinity with an empirical graph neural network.
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- Briefings in Bioinformatics, 2023, v. 24, n. 1, p. 1, doi. 10.1093/bib/bbac603
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- Article
Alkaloids from Pandanus amaryllifolius Roxb Leaf as Promising Candidates for Antidyslipidemic Agents: An in silico study.
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- Pharmacognosy Journal, 2023, v. 15, n. 1, p. 106, doi. 10.5530/pj.2023.15.14
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- Article
Boosting the Full Potential of PyMOL with Structural Biology Plugins.
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- Biomolecules (2218-273X), 2022, v. 12, n. 12, p. 1764, doi. 10.3390/biom12121764
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- Article
Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses.
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- PLoS ONE, 2022, v. 17, n. 11, p. 1, doi. 10.1371/journal.pone.0268956
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- Article
The Difference in Structural States between Canonical Proteins and Their Isoforms Established by Proteome-Wide Bioinformatics Analysis.
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- Biomolecules (2218-273X), 2022, v. 12, n. 11, p. 1610, doi. 10.3390/biom12111610
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- Article
Protein Data Bank: A Comprehensive Review of 3D Structure Holdings and Worldwide Utilization by Researchers, Educators, and Students.
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- Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101425
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- Article
Structural Achievability of an NH–π Interaction between Gln and Phe in a Crystal Structure of a Collagen-like Peptide.
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- Biomolecules (2218-273X), 2022, v. 12, n. 10, p. N.PAG, doi. 10.3390/biom12101433
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- Article
Rational Design of a Thermostable 2′-Deoxyribosyltransferase for Nelarabine Production by Prediction of Disulfide Bond Engineering Sites.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 19, p. 11806, doi. 10.3390/ijms231911806
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Visualizing the knowledge structure and evolution of bioinformatics.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04948-9
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- Article
Editorial: Structural bioinformatics and biophysical approaches for understanding the plant responses to biotic and abiotic stresses.
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- Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1012584
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- Article
RNAloops: a database of RNA multiloops.
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- Bioinformatics, 2022, v. 38, n. 17, p. 4200, doi. 10.1093/bioinformatics/btac484
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- Article
Bioinformatics Analysis and Structure of Gastric Cancer Prognosis Model Based on Lipid Metabolism and Immune Microenvironment.
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- Genes, 2022, v. 13, n. 9, p. 1581, doi. 10.3390/genes13091581
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Bioinformatics Based Structural Analysis of Cytochrome P450 genes in Candida tropicalis.
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- Nigerian Journal of Parasitology, 2022, v. 43, n. 2, p. 345, doi. 10.4314/njpar.v43i2.17
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- Article
Structural bioinformatics analysis of SARS-CoV-2 variants reveals higher hACE2 receptor binding affinity for Omicron B.1.1.529 spike RBD compared to wild type reference.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-18507-y
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- Article
A Rare MSH2 Variant as a Candidate Marker for Lynch Syndrome II Screening in Tunisia: A Case of Diffuse Gastric Carcinoma.
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- Genes, 2022, v. 13, n. 8, p. 1355, doi. 10.3390/genes13081355
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Targeted gene sequencing of FYCO1 identified a novel mutation in a Pakistani family for autosomal recessive congenital cataract.
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- Molecular Genetics & Genomic Medicine, 2022, v. 10, n. 8, p. 1, doi. 10.1002/mgg3.1985
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- Article
An in silico approach to study the role of epitope order in the multi-epitope-based peptide (MEBP) vaccine design.
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- Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-16445-3
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- Article
Structural Bioinformatics and Deep Learning of Metalloproteins: Recent Advances and Applications.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 14, p. 7684, doi. 10.3390/ijms23147684
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- Article
Zinc Modulation of Neuronal Calcium Sensor Proteins: Three Modes of Interaction with Different Structural Outcomes.
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- Biomolecules (2218-273X), 2022, v. 12, n. 7, p. N.PAG, doi. 10.3390/biom12070956
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- Article
基于氨基酸组分和位点保守信息识别蛋白质 ■HEME结合残基.
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- Chinese Journal of Bioinformatics, 2022, v. 20, n. 3, p. 189, doi. 10.12113/202103014
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Along the allostery stream: Recent advances in computational methods for allosteric drug discovery.
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- WIREs: Computational Molecular Science, 2022, v. 12, n. 4, p. 1, doi. 10.1002/wcms.1585
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Deciphering the conformational transitions of LIMK2 active and inactive states to ponder specific druggable states through microsecond scale molecular dynamics simulation.
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- Journal of Computer-Aided Molecular Design, 2022, v. 36, n. 6, p. 459, doi. 10.1007/s10822-022-00459-0
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Design – a new way to look at old molecules.
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- Journal of Integrative Bioinformatics, 2022, v. 19, n. 2, p. 1, doi. 10.1515/jib-2022-0020
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