Works matching DE "STRUCTURAL bioinformatics"
Results: 428
Inverse coupling in leak and voltage-activated K<sup>+</sup> channel gates underlies distinct roles in electrical signaling.
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- Nature Structural & Molecular Biology, 2009, v. 16, n. 1, p. 71, doi. 10.1038/nsmb.1525
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The effect of H3K79 dimethylation and H4K20 trimethylation on nucleosome and chromatin structure.
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- Nature Structural & Molecular Biology, 2008, v. 15, n. 10, p. 1122, doi. 10.1038/nsmb.1489
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Structural clues to prion mysteries.
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- Nature Structural & Molecular Biology, 2005, v. 12, n. 7, p. 567, doi. 10.1038/nsmb0705-567
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Whither structural biology?
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- Nature Structural & Molecular Biology, 2004, v. 11, n. 1, p. 12, doi. 10.1038/nsmb0104-12
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Are computer scientists the sutlers of modern biology?: Bioinformatics is indispensible for progress in molecular life sciences but does not get credit for its contributions.
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- Complexity, 2014, v. 19, n. 4, p. 10, doi. 10.1002/cplx.21501
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A self-adaptive evolutionary algorithm using Monte Carlo Fragment insertion and conformation clustering for the protein structure prediction problem.
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- Natural Computing, 2024, v. 23, n. 4, p. 687, doi. 10.1007/s11047-022-09916-z
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7,8-(Dichloromethano)homo[70]fullerene, an Unusual, but Unexceptional, Methanoannulene.
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- Helvetica Chimica Acta, 2003, v. 86, n. 4, p. 1140
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Crystal Packing: An Examination of the Packing of Molecules Approximately Isosteric with 4,5-Dichlorophthalic Anhydride.
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- Helvetica Chimica Acta, 2003, v. 86, n. 4, p. 1175
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RCSB protein Data Bank: exploring protein 3D similarities via comprehensive structural alignments.
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- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae370
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RNAloops: a database of RNA multiloops.
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- Bioinformatics, 2022, v. 38, n. 17, p. 4200, doi. 10.1093/bioinformatics/btac484
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Comparative evaluation of shape retrieval methods on macromolecular surfaces: an application of computer vision methods in structural bioinformatics.
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- Bioinformatics, 2021, v. 37, n. 23, p. 4375, doi. 10.1093/bioinformatics/btab511
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BioCommons: a robust java library for RNA structural bioinformatics.
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- Bioinformatics, 2021, v. 37, n. 17, p. 2766, doi. 10.1093/bioinformatics/btab069
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Structural bioinformatics enhances mechanistic interpretation of genomic variation, demonstrated through the analyses of 935 distinct RAS family mutations.
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- Bioinformatics, 2021, v. 37, n. 10, p. 1367, doi. 10.1093/bioinformatics/btaa972
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PyMod 3: a complete suite for structural bioinformatics in PyMOL.
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- Bioinformatics, 2021, v. 37, n. 10, p. 1471, doi. 10.1093/bioinformatics/btaa849
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BioStructures.jl: read, write and manipulate macromolecular structures in Julia.
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- Bioinformatics, 2020, v. 36, n. 14, p. 4206, doi. 10.1093/bioinformatics/btaa502
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DeepMSA: constructing deep multiple sequence alignment to improve contact prediction and fold-recognition for distant-homology proteins.
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- Bioinformatics, 2020, v. 36, n. 7, p. 2105, doi. 10.1093/bioinformatics/btz863
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Lemon: a framework for rapidly mining structural information from the Protein Data Bank.
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- Bioinformatics, 2019, v. 35, n. 20, p. 4165, doi. 10.1093/bioinformatics/btz178
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Protein model quality assessment using 3D oriented convolutional neural networks.
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- Bioinformatics, 2019, v. 35, n. 18, p. 3313, doi. 10.1093/bioinformatics/btz122
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Smooth orientation-dependent scoring function for coarse-grained protein quality assessment.
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- Bioinformatics, 2019, v. 35, n. 16, p. 2801, doi. 10.1093/bioinformatics/bty1037
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PySFD: comprehensive molecular insights from significant feature differences detected among many simulated ensembles.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1588, doi. 10.1093/bioinformatics/bty818
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A natural upper bound to the accuracy of predicting protein stability changes upon mutations.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1513, doi. 10.1093/bioinformatics/bty880
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Large-scale prediction of binding affinity in protein–small ligand complexes: the PRODIGY-LIG web server.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1585, doi. 10.1093/bioinformatics/bty816
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High precision protein functional site detection using 3D convolutional neural networks.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1503, doi. 10.1093/bioinformatics/bty813
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AbPredict 2: a server for accurate and unstrained structure prediction of antibody variable domains.
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- Bioinformatics, 2019, v. 35, n. 9, p. 1591, doi. 10.1093/bioinformatics/bty822
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SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation.
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- Bioinformatics, 2019, v. 35, n. 3, p. 462, doi. 10.1093/bioinformatics/bty635
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3DClusterViSu: 3D clustering analysis of super-resolution microscopy data by 3D Voronoi tessellations.
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- Bioinformatics, 2018, v. 34, n. 17, p. 3004, doi. 10.1093/bioinformatics/bty200
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eMolTox: prediction of molecular toxicity with confidence.
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- Bioinformatics, 2018, v. 34, n. 14, p. 2508, doi. 10.1093/bioinformatics/bty135
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NGLview-interactive molecular graphics for Jupyter notebooks.
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- Bioinformatics, 2018, v. 34, n. 7, p. 1241, doi. 10.1093/bioinformatics/btx789
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NavMol 3.0: enabling the representation of metabolic reactions by blind users.
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- Bioinformatics, 2018, v. 34, n. 1, p. 120, doi. 10.1093/bioinformatics/btx556
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Mobi 2.0: an improved method to define intrinsic disorder, mobility and linear binding regions in protein structures.
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- Bioinformatics, 2018, v. 34, n. 1, p. 122, doi. 10.1093/bioinformatics/btx592
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LightDock: a new multi-scale approach to protein--protein docking.
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- Bioinformatics, 2018, v. 34, n. 1, p. 49, doi. 10.1093/bioinformatics/btx555
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In silico structural modeling of multiple epigenetic marks on DNA.
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- Bioinformatics, 2018, v. 34, n. 1, p. 41, doi. 10.1093/bioinformatics/btx516
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Cpipe: a comprehensive computational platform for sequence and structure-based analyses of Cysteine residues.
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- Bioinformatics, 2017, v. 33, n. 15, p. 2395, doi. 10.1093/bioinformatics/btx181
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Correlated mutations select misfolded from properly folded proteins.
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- Bioinformatics, 2017, v. 33, n. 10, p. 1497, doi. 10.1093/bioinformatics/btx013
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MobiDB-lite: fast and highly specific consensus prediction of intrinsic disorder in proteins.
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- Bioinformatics, 2017, v. 33, n. 9, p. 1402, doi. 10.1093/bioinformatics/btx015
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Sphinx: merging knowledge-based and ab initio approaches to improve protein loop prediction.
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- Bioinformatics, 2017, v. 33, n. 9, p. 1346, doi. 10.1093/bioinformatics/btw823
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Cross-React: a new structural bioinformatics method for predicting allergen cross-reactivity.
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- Bioinformatics, 2017, v. 33, n. 7, p. 1014, doi. 10.1093/bioinformatics/btw767
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The structural bioinformatics library: modeling in biomolecular science and beyond.
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- Bioinformatics, 2017, v. 33, n. 7, p. 997, doi. 10.1093/bioinformatics/btw752
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MIToS.jl: mutual information tools for protein sequence analysis in the Julia language.
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- Bioinformatics, 2017, v. 33, n. 4, p. 564, doi. 10.1093/bioinformatics/btw646
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Accounting for pairwise distance restraints in FFT-based protein--protein docking.
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- Bioinformatics, 2016, v. 32, n. 21, p. 3342, doi. 10.1093/bioinformatics/btw306
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Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.
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- Bioinformatics, 2016, v. 32, n. 21, p. 3270, doi. 10.1093/bioinformatics/btw404
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Shape complementarity and hydrogen bond preferences in protein-protein interfaces: implications for antibody modeling and protein-protein docking.
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- Bioinformatics, 2016, v. 32, n. 16, p. 2451, doi. 10.1093/bioinformatics/btw197
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mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories.
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- Bioinformatics, 2016, v. 32, n. 16, p. 2531, doi. 10.1093/bioinformatics/btw129
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PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm.
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- Bioinformatics, 2016, v. 32, n. 15, p. 2289, doi. 10.1093/bioinformatics/btw133
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- Article
LIBRA: LIgand Binding site Recognition Application.
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- Bioinformatics, 2015, v. 31, n. 24, p. 4020, doi. 10.1093/bioinformatics/btv489
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svviz: a read viewer for validating structural variants.
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- Bioinformatics, 2015, v. 31, n. 24, p. 3994, doi. 10.1093/bioinformatics/btv478
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InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
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- Bioinformatics, 2015, v. 31, n. 24, p. 4023, doi. 10.1093/bioinformatics/btv492
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BiopLib and BiopTools--a C programming library and toolset for manipulating protein structure.
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- Bioinformatics, 2015, v. 31, n. 24, p. 4017, doi. 10.1093/bioinformatics/btv482
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An integrated structure- and system-based framework to identify new targets of metabolites and known drugs.
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- Bioinformatics, 2015, v. 31, n. 24, p. 3922, doi. 10.1093/bioinformatics/btv477
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Integrated structure- and ligand-based in silico approach to predict inhibition of cytochrome P450 2D6.
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- Bioinformatics, 2015, v. 31, n. 24, p. 3930, doi. 10.1093/bioinformatics/btv486
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