Works matching DE "STOP codons"

Results: 850

The CCC Proline Codon Preceding a Stop Codon Modulates Translation Termination in Eukaryotes Depending on the Molecular Context.

Published in:

Molecular Biology, 2025, v. 59, n. 4, p. 538, doi. 10.1134/S0026893325700177

By:

Biziaev, N. S.;
Shuvalov, A. V.;
Alkalaeva, E. Z.

Publication type:

Article

Pheno-molecular confirmation and protein structure analysis of Wild Vs CRISPR white mutant Bactrocera dorsalis.

Published in:

Journal of Environmental Biology, 2025, v. 46, n. 4, p. 604, doi. 10.22438/jeb/46/4/MRN-5530

By:

Dash, S.;
Asokan, R.;
Naik, J. D.

Publication type:

Article

Identification of the Novel HLA‐C*15:271N Allele by Next Generation Sequencing.

Published in:

HLA: Immune Response Genetics, 2025, v. 106, n. 1, p. 1, doi. 10.1111/tan.70299

By:

Yang, John Jeongseok;
Oh, Heung‐Bum

Publication type:

Article

Unusual mammalian usage of TGA stop codons reveals that sequence conservation need not imply purifying selection.

Published in:

PLoS Biology, 2022, v. 20, n. 5, p. 1, doi. 10.1371/journal.pbio.3001588

By:

Ho, Alexander Thomas;
Hurst, Laurence Daniel

Publication type:

Article

Small molecule Y-320 stimulates ribosome biogenesis, protein synthesis, and aminoglycoside-induced premature termination codon readthrough.

Published in:

PLoS Biology, 2021, v. 19, n. 5, p. 1, doi. 10.1371/journal.pbio.3001221

By:

Hosseini-Farahabadi, Sara;
Baradaran-Heravi, Alireza;
Zimmerman, Carla;
Choi, Kunho;
Flibotte, Stephane;
Roberge, Michel

Publication type:

Article

The New Mitogenome of Erpornis zantholeuca (Aves: Passeriformes): Sequence, Structure, and Phylogenetic Analyses.

Published in:

Cytogenetic & Genome Research, 2022, v. 162, n. 5, p. 250, doi. 10.1159/000526099

By:

Yuan, Qingmiao;
Sha, Jianbin;
Duan, Yubao

Publication type:

Article

Advances in therapeutic use of a drug-stimulated translational readthrough of premature termination codons.

Published in:

Molecular Medicine, 2018, v. 24, n. 1, p. N.PAG, doi. 10.1186/s10020-018-0024-7

By:

Dabrowski, Maciej;
Bukowy-Bieryllo, Zuzanna;
Zietkiewicz, Ewa

Publication type:

Article

Ratpost: a searchable database of protein-inactivating sequence variations in 40 sequenced rat-inbred strains.

Published in:

Mammalian Genome, 2021, v. 32, n. 1, p. 1, doi. 10.1007/s00335-020-09853-1

By:

Timmermans, Steven;
Libert, Claude

Publication type:

Article

Decoding the role of aberrant RNA alternative splicing in hepatocellular carcinoma: a comprehensive review.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 19, p. 17691, doi. 10.1007/s00432-023-05474-8

By:

Sheng, Mengfei;
Zhang, Yuanyuan;
Wang, Yaoyun;
Liu, Weiyi;
Wang, Xingyu;
Ke, Tiaoying;
Liu, Pingyang;
Wang, Sihan;
Shao, Wei

Publication type:

Article

utr.annotation: a tool for annotating genomic variants that could influence post-transcriptional regulation.

Published in:

2021

By:

Liu, Yating;
Dougherty, Joseph D

Publication type:

Abstract

AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions.

Published in:

Bioinformatics, 2020, v. 36, n. 4, p. 1022, doi. 10.1093/bioinformatics/btz714

By:

Korandla, Deepank R;
Wozniak, Jacob M;
Campeau, Anaamika;
Gonzalez, David J;
Wright, Erik S

Publication type:

Article

Human DUS1L catalyzes dihydrouridine modification at tRNA positions 16/17, and DUS1L overexpression perturbs translation.

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06942-8

By:

Matsuura, Jin;
Akichika, Shinichiro;
Wei, Fan-Yan;
Suzuki, Tsutomu;
Yamamoto, Takahiro;
Watanabe, Yuka;
Valášek, Leoš Shivaya;
Mukasa, Akitake;
Tomizawa, Kazuhito;
Chujo, Takeshi

Publication type:

Article

From Yeast to Mammals, the Nonsense-Mediated mRNA Decay as a Master Regulator of Long Non-Coding RNAs Functional Trajectory.

Published in:

Non-Coding RNA, 2021, v. 7, n. 3, p. 1, doi. 10.3390/ncrna7030044

By:

Andjus, Sara;
Morillon, Antonin;
Wery, Maxime

Publication type:

Article

FuncPEP: A Database of Functional Peptides Encoded by Non-Coding RNAs.

Published in:

Non-Coding RNA, 2020, v. 6, n. 4, p. 1, doi. 10.3390/ncrna6040041

By:

Dragomir, Mihnea P.;
Manyam, Ganiraju C.;
Ott, Leonie Florence;
Berland, Léa;
Knutsen, Erik;
Ivan, Cristina;
Lipovich, Leonard;
Broom, Bradley M.;
Calin, George A.

Publication type:

Article

CRISPR-Cas9-Mediated ATF6B Gene Editing Enhances Membrane Protein Production in HEK293T Cells.

Published in:

Bioengineering (Basel), 2025, v. 12, n. 4, p. 409, doi. 10.3390/bioengineering12040409

By:

Choi, Ho Joong;
Kim, Ba Reum;
Kim, Ok-Hee;
Kim, Say-June

Publication type:

Article

In Vitro Mutagenesis of Dendrobium Gabriella Suryajaya Using Ethyl Methane Sulfonate (EMS) and Plantlet Regeneration.

Published in:

Biosaintifika: Journal of Biology & Biology Education, 2023, v. 15, n. 1, p. 87, doi. 10.15294/biosaintifika.v15i1.40997

By:

Martha, Khairana Millennia;
Dewanti, Parawita;
Restanto, Didik Pudji;
Ratnasari, Tri;
Alfian, Firdha Narulita

Publication type:

Article

An updated and extended version of the Melastomataceae probe set for target capture.

Published in:

Applications in Plant Sciences, 2024, v. 12, n. 1, p. 1, doi. 10.1002/aps3.11564

By:

Dagallier, Léo‐Paul M. J.;
Michelangeli, Fabián A.

Publication type:

Article

Using In silico Tools to Analyze the 5' Untranslated Regions of the Alcohol Dehydrogenase Gene from Arabidopsis thaliana and Omega Sequence.

Published in:

Makara Journal of Science, 2023, v. 27, n. 4, p. 314, doi. 10.7454/mss.v27i4.1472

By:

Mohammadhassan, Reza;
Asadishad, Tina

Publication type:

Article

Comparative Analysis of Streptococcus pneumoniae Type I Restriction-Modification Loci: Variation in hsdS Gene Target Recognition Domains.

Published in:

Pathogens, 2020, v. 9, n. 9, p. 712, doi. 10.3390/pathogens9090712

By:

Oliver, Melissa B.;
Swords, W. Edward

Publication type:

Article

Whole-Genome Sequencing Characterization of Virulence Profiles of Listeria monocytogenes Food and Human Isolates and In Vitro Adhesion/Invasion Assessment.

Published in:

Microorganisms, 2022, v. 10, n. 1, p. 62, doi. 10.3390/microorganisms10010062

By:

Schiavano, Giuditta Fiorella;
Ateba, Collins Njie;
Petruzzelli, Annalisa;
Mele, Veronica;
Amagliani, Giulia;
Guidi, Fabrizia;
De Santi, Mauro;
Pomilio, Francesco;
Blasi, Giuliana;
Gattuso, Antonietta;
Di Lullo, Stefania;
Rocchegiani, Elena;
Brandi, Giorgio

Publication type:

Article

Presence of Listeria monocytogenes in Ready-to-Eat Artisanal Chilean Foods.

Published in:

Microorganisms, 2020, v. 8, n. 11, p. 1669, doi. 10.3390/microorganisms8111669

By:

Bustamante, Fernanda;
Maury-Sintjago, Eduard;
Leal, Fabiola Cerda;
Acuña, Sergio;
Aguirre, Juan;
Troncoso, Miriam;
Figueroa, Guillermo;
Parra-Flores, Julio

Publication type:

Article

Population Structure of Non-ST6 Listeria monocytogenes Isolated in the Red Meat and Poultry Value Chain in South Africa.

Published in:

Microorganisms, 2020, v. 8, n. 8, p. 1152, doi. 10.3390/microorganisms8081152

By:

Matle, Itumeleng;
Mafuna, Thendo;
Madoroba, Evelyn;
Mbatha, Khanyisile R.;
Magwedere, Kudakwashe;
Pierneef, Rian

Publication type:

Article

Reinitiation at non-canonical start codons leads to leak expression when incorporating unnatural amino acids.

Published in:

Scientific Reports, 2015, p. 11866, doi. 10.1038/srep11866

By:

Kalstrup, Tanja;
Blunck, Rikard

Publication type:

Article

Screening Mutations of MYBPC3 in 114 Unrelated Patients with Hypertrophic Cardiomyopathy by Targeted Capture and Next-generation Sequencing.

Published in:

Scientific Reports, 2015, p. 11411, doi. 10.1038/srep11411

By:

Liu, Xuxia;
Jiang, Tengyong;
Piao, Chunmei;
Li, Xiaoyan;
Guo, Jun;
Zheng, Shuai;
Zhang, Xiaoping;
Cai, Tao;
Du, Jie

Publication type:

Article

Why Is the UAG (Amber) Stop Codon Almost Absent in Highly Expressed Bacterial Genes?

Published in:

Life (2075-1729), 2022, v. 12, n. 3, p. 431, doi. 10.3390/life12030431

By:

Belin, Dominique;
Puigbò, Pere

Publication type:

Article

The Combinatorial Fusion Cascade to Generate the Standard Genetic Code.

Published in:

Life (2075-1729), 2021, v. 11, n. 9, p. 975, doi. 10.3390/life11090975

By:

Nesterov-Mueller, Alexander;
Popov, Roman

Publication type:

Article

Combinatorial Fusion Rules to Describe Codon Assignment in the Standard Genetic Code.

Published in:

Life (2075-1729), 2021, v. 11, n. 1, p. 4, doi. 10.3390/life11010004

By:

Nesterov-Mueller, Alexander;
Popov, Roman;
Seligmann, Hervé

Publication type:

Article

Single-Frame, Multiple-Frame and Framing Motifs in Genes.

Published in:

Life (2075-1729), 2019, v. 9, n. 1, p. 18, doi. 10.3390/life9010018

By:

Michel, Christian J.

Publication type:

Article

Detection, distribution, and functions of RNA N<sup>6</sup>-methyladenosine (m<sup>6</sup>A) in plant development and environmental signal responses.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1429011

By:

Yang Xiang;
Dian Zhang;
Lei Li;
Yi-Xuan Xue;
Chao-Yang Zhang;
Qing-Feng Meng;
Jin Wang;
Xiao-Li Tan;
Yu-Long Li

Publication type:

Article

Comprehensive analysis of the mitochondrial genome of Rehmannia glutinosa: insights into repeat-mediated recombinations and RNA editing-induced stop codon acquisition.

Published in:

Frontiers in Plant Science, 2024, p. 01, doi. 10.3389/fpls.2024.1326387

By:

Tiexin Zeng;
Yang Ni;
Jingling Li;
Haimei Chen;
Qianqi Lu;
Mei Jiang;
Lijia Xu;
Chang Liu;
Peigen Xiao

Publication type:

Article

The complete mitochondrial genome of Aglaia odorata, insights into its genomic structure and RNA editing sites.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1362045

By:

Zhigang Hao;
Zhiping Zhang;
Jinan Zhang;
Xiufen Cui;
Jianqiang Li;
Laixin Luo;
Yingbin Li

Publication type:

Article

Natural variation in the plant polyadenylation complex.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2023.1303398

By:

Lichun Zhou;
Kai Li;
Hunt, Arthur G.

Publication type:

Article

Identification of shared neoantigens derived from frameshift mutations in the APC gene.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1574955

By:

Zhao, Peng;
Effenberger, Clara;
Matsumoto, Saki;
Tanaka, Toshihiro;
Nakamura, Yusuke;
Kiyotani, Kazuma

Publication type:

Article

Case Report: Prenatal Whole-Exome Sequencing to Identify a Novel Heterozygous Synonymous Variant in NIPBL in a Fetus With Cornelia de Lange Syndrome.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.628890

By:

Qiao, Fengchang;
Zhang, Cuiping;
Wang, Yan;
Liu, Gang;
Shao, Binbin;
Hu, Ping;
Xu, Zhengfeng

Publication type:

Article

Construction and iterative redesign of synXVI a 903 kb synthetic Saccharomyces cerevisiae chromosome.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-55318-3

By:

Goold, Hugh D.;
Kroukamp, Heinrich;
Erpf, Paige E.;
Zhao, Yu;
Kelso, Philip;
Calame, Julie;
Timmins, John J. B.;
Wightman, Elizabeth L. I.;
Peng, Kai;
Carpenter, Alexander C.;
Llorente, Briardo;
Hawthorne, Carmen;
Clay, Samuel;
van Wyk, Niël;
Daniel, Elizabeth L.;
Harrison, Fergus;
Meier, Felix;
Willows, Robert D.;
Cai, Yizhi;
Walker, Roy S. K.

Publication type:

Article

Environment modulates protein heterogeneity through transcriptional and translational stop codon readthrough.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48387-x

By:

Romero Romero, Maria Luisa;
Poehls, Jonas;
Kirilenko, Anastasiia;
Richter, Doris;
Jumel, Tobias;
Shevchenko, Anna;
Toth-Petroczy, Agnes

Publication type:

Article

Exon-junction complex association with stalled ribosomes and slow translation-independent disassembly.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48371-5

By:

Bensaude, Olivier;
Barbosa, Isabelle;
Morillo, Lucia;
Dikstein, Rivka;
Le Hir, Hervé

Publication type:

Article

Multimodal binding and inhibition of bacterial ribosomes by the antimicrobial peptides Api137 and Api88.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48027-4

By:

Lauer, Simon M.;
Reepmeyer, Maren;
Berendes, Ole;
Klepacki, Dorota;
Gasse, Jakob;
Gabrielli, Sara;
Grubmüller, Helmut;
Bock, Lars V.;
Krizsan, Andor;
Nikolay, Rainer;
Spahn, Christian M. T.;
Hoffmann, Ralf

Publication type:

Article

Comprehensive analysis of both long and short read transcriptomes of a clonal and a seed-propagated model species reveal the prerequisites for transcriptional activation of autonomous and non-autonomous transposons in plants.

Published in:

Mobile DNA, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13100-022-00271-5

By:

Chen, Ting-Hsuan;
Winefield, Christopher

Publication type:

Article

The role of primate-specific genes in the phenotypic evolution of lorises Open Access.

Published in:

Current Zoology, 2025, v. 71, n. 2, p. 267, doi. 10.1093/cz/zoae048

By:

Chen, Chunyan;
Shao, Yong;
Wang, Sheng;
Li, Mingli;
Qiao, Haifa

Publication type:

Article

Genome analyses of the new model protist Euplotes vannus focusing on genome rearrangement and resistance to environmental stressors.

Published in:

Molecular Ecology Resources, 2019, v. 19, n. 5, p. 1292, doi. 10.1111/1755-0998.13023

By:

Chen, Xiao;
Jiang, Yaohan;
Gao, Feng;
Zheng, Weibo;
Krock, Timothy J.;
Stover, Naomi A.;
Lu, Chao;
Katz, Laura A.;
Song, Weibo

Publication type:

Article

ORFans in Mitochondrial Genomes of Marine Polychaete Polydora.

Published in:

Genome Biology & Evolution, 2023, v. 15, n. 12, p. 1, doi. 10.1093/gbe/evad219

By:

Selifanova, Maria;
Demianchenko, Oleg;
Noskova, Elizaveta;
Pitikov, Egor;
Skvortsov, Denis;
Drozd, Jana;
Vatolkina, Nika;
Apel, Polina;
Kolodyazhnaya, Ekaterina;
Ezhova, Margarita A;
Tzetlin, Alexander B;
Neretina, Tatiana V;
Knorre, Dmitry A

Publication type:

Article

Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox.

Published in:

Genome Biology & Evolution, 2022, v. 14, n. 8, p. 1, doi. 10.1093/gbe/evac115

By:

Ho, Alexander T;
Hurst, Laurence D

Publication type:

Article

Synteny-Based Genome Assembly for 16 Species of Heliconius Butterflies, and an Assessment of Structural Variation across the Genus.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 7, p. 1, doi. 10.1093/gbe/evab069

By:

Seixas, Fernando A;
Edelman, Nathaniel B;
Mallet, James

Publication type:

Article

sangeranalyseR: Simple and Interactive Processing of Sanger Sequencing Data in R.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 3, p. 1, doi. 10.1093/gbe/evab028

By:

Chao, Kuan-Hao;
Barton, Kirston;
Palmer, Sarah;
Lanfear, Robert

Publication type:

Article

Selection-Driven Gene Inactivation in Salmonella.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 3, p. 18, doi. 10.1093/gbe/evaa010

By:

Cherry, Joshua L

Publication type:

Article

Evolution and Unprecedented Variants of the Mitochondrial Genetic Code in a Lineage of Green Algae.

Published in:

Genome Biology & Evolution, 2019, v. 11, n. 10, p. 2992, doi. 10.1093/gbe/evz210

By:

Žihala, David;
Eliáš, Marek

Publication type:

Article

Refining the Ambush Hypothesis: Evidence That GC- and ATRich Bacteria Employ Different Frameshift Defence Strategies.

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1153, doi. 10.1093/gbe/evy075

By:

Abrahams, Liam;
Hurst, Laurence D.

Publication type:

Article

Are Nonsense Alleles of Drosophila melanogaster Genes under Any Selection?

Published in:

Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1012, doi. 10.1093/gbe/evy032

By:

Potapova, Nadezhda A.;
Andrianova, Maria A.;
Bazykin, Georgii A.;
Kondrashov, Alexey S.

Publication type:

Article

Widespread Polymorphism in the Positions of Stop Codons in Drosophila melanogaster.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 533, doi. 10.1093/gbe/evr113

By:

Lee, Yuh Chwen G.;
Reinhardt, Josephine A.

Publication type:

Article