Works matching DE "SPLIT genes"

Results: 648

De novo clustering of large long-read transcriptome datasets with isONclust3 Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 5, p. 1, doi. 10.1093/bioinformatics/btaf207

By:

Petri, Alexander J;
Sahlin, Kristoffer

Publication type:

Article

Conformational dynamics of single pre-mRNA molecules during in vitro splicing.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 4, p. 504, doi. 10.1038/nsmb.1767

By:

Abelson, John;
Blanco, Mario;
Ditzler, Mark A.;
Fuller, Franklin;
Aravamudhan, Pavithra;
Wood, Mona;
Villa, Tommaso;
Ryan, Daniel E.;
Pleiss, Jeffrey A.;
Maeder, Corina;
Guthrie, Christine;
Walter, Nils G.

Publication type:

Article

Reconstitution of both steps of Saccharomyces cerevisiae splicing with purified spliceosomal components.

Published in:

Nature Structural & Molecular Biology, 2009, v. 16, n. 12, p. 1237, doi. 10.1038/nsmb.1729

By:

Warkocki, Zbigniew;
Odenwälder, Peter;
Schmitzová, Jana;
Platzmann, Florian;
Stark, Holger;
Urlaub, Henning;
Ficner, Ralf;
Fabrizio, Patrizia;
Lührmann, Reinhard

Publication type:

Article

Structural basis for exon recognition by a group II intron.

Published in:

Nature Structural & Molecular Biology, 2008, v. 15, n. 11, p. 1221, doi. 10.1038/nsmb.1509

By:

Toor, Navtej;
Rajashankar, Kanagalaghatta;
Keating, Kevin S.;
Pyle, Anna Marie

Publication type:

Article

PYM binds the cytoplasmic exon-junction complex and ribosomes to enhance translation of spliced mRNAs.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1173, doi. 10.1038/nsmb1321

By:

Diem, Michael D.;
Chan, Chia C.;
Younis, Ihab;
Dreyfuss, Gideon

Publication type:

Article

A regulator of Dscam mutually exclusive splicing fidelity.

Published in:

Nature Structural & Molecular Biology, 2007, v. 14, n. 12, p. 1134, doi. 10.1038/nsmb1339

By:

Olson, Sara;
Blanchette, Marco;
Park, Jung;
Savva, Yiannis;
Yeo, Gene W.;
Yeakley, Joanne M.;
Rio, Donald C.;
Graveley, Brenton R.

Publication type:

Article

Seeking perfection.

Published in:

Nature Reviews Microbiology, 2010, v. 8, n. 10, p. 681, doi. 10.1038/nrmicro2446

By:

Otto, Thomas D.

Publication type:

Article

Cloning and characterization of c-phycocyanin operon from the cyanobacterium Arthrospira platensis FACHB341.

Published in:

Journal of Applied Phycology, 2005, v. 17, n. 2, p. 181

By:

Jinjie Liu;
Xuecheng Zhang;
Zhenghong Sui;
Xiaohui Zhang;
Yunxiang Mao

Publication type:

Article

Haplotypes of CYP3A4 and their close linkage with CYP3A5 haplotypes in a Japanese population (Communicated by Michael Dean) Online Citation: Human Mutation, Mutation in Brief #681 (2003) Online http://www.interscience.wiley.com/homepages/38515/pdf/mutation/681.pdf)

Published in:

Human Mutation, 2004, v. 23, n. 1, p. 100, doi. 10.1002/humu.9210

By:

Hiromi Fukushima-Uesaka;
Yoshiro Saito;
Hidemi Watanabe;
Kisho Shiseki;
Mayumi Saeki;
Takahiro Nakamura;
Kouichi Kurose;
Kimie Sai;
Kazuo Komamura;
Kazuyuki Ueno;
Shiro Kamakura;
Masafumi Kitakaze;
Sotaro Hanai;
Toshiharu Nakajima;
Kenji Matsumoto;
Hirohisa Saito;
Yu-ichi Goto;
Hideo Kimura;
Masaaki Katoh;
Kenji Sugai

Publication type:

Article

Characterisation of a 161 kb deletion extending from the NBR1 to the BRCA1 genes in a French breast-ovarian cancer family(Communicated by Richard G.H. Cotton)Online Citation: Human Mutation, Mutation in Brief #619 (2003) Online http://www.interscience.wiley.com/humanmutation/pdf/mutation/619.pdf)

Published in:

Human Mutation, 2003, v. 21, n. 6, p. 654, doi. 10.1002/humu.9148

By:

Sophie Gad;
Ivan Bièche;
Michel Barrois;
Federica Casilli;
Sabine Pages-Berhouet;
Catherine Dehainault;
Marion Gauthier-Villars;
Aaron Bensimon;
Alain Aurias;
Rosette Lidereau;
Brigitte Bressac-de Paillerets;
Mario Tosi;
Sylvie Mazoyer

Publication type:

Article

Identification of novel SNPs in the interleukin 6 receptor gene (IL6R) (Communicated by Michael Dean) Online Citation: Human Mutation, Mutation in Brief #601 (2002) Online http://www.interscience.wiley.com/humanmutation/pdf/mutation/601.pdf).

Published in:

Human Mutation, 2003, v. 21, n. 4, p. 450, doi. 10.1002/humu.9130

By:

Lyoung Hyo Kim;
Hyo-Suk Lee;
Yoon Jun Kim;
Ji Hyun Jung;
Jun Yeun Kim;
Byung Lae Park;
Hyoung Doo Shin

Publication type:

Article

A new non-hydrophobic cell wall protein (CWP10) of Metarhizium anisopliae enhances conidial hydrophobicity when expressed in Beauveria bassiana.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 85, n. 4, p. 975, doi. 10.1007/s00253-009-2083-8

By:

Jun Li;
Sheng-Hua Ying;
Le-Tian Shan;
Ming-Guang Feng

Publication type:

Article

Establishing the genetic relationships between the wild and cultivated olives using a nuclear intron from nitrate reductase ( nia-i3).

Published in:

Plant Systematics & Evolution, 2007, v. 269, n. 1/2, p. 63, doi. 10.1007/s00606-007-0566-6

By:

Hamman-Khalifa, A. M.;
Navajas-Pérez, R.;
Herrán, R.;
Ruiz Rejón, M.;
Garrido-Ramos, M. A.;
Ruiz Rejón, C.;
Rosúa, J. L.

Publication type:

Article

A Novel Otoferlin Splice-Site Mutation in Siblings with Auditory Neuropathy Spectrum Disorder.

Published in:

Audiology & Neurotology, 2013, v. 18, n. 6, p. 374, doi. 10.1159/000354978

By:

Runge, Christina L.;
Erbe, Christy B.;
McNally, Mark T.;
Van Dusen, Courtney;
Friedland, David R.;
Kwitek, Anne E.;
Kerschner, Joseph E.

Publication type:

Article

Phenotypic Analyses and Mutation Screening of the SLC26A4 and FOXI1 Genes in 101 Taiwanese Families with Bilateral Nonsyndromic Enlarged Vestibular Aqueduct (DFNB4) or Pendred Syndrome.

Published in:

Audiology & Neurotology, 2010, v. 15, n. 1, p. 57, doi. 10.1159/000231567

By:

Chen-Chi Wu;
Ying-Chang Lu;
Pei-Jer Chen;
Po-Lin Yeh;
Yi-Nin Su;
Wuh-Liang Hwu;
Chuan-Jen Hsu

Publication type:

Article

Evolution and maintenance of mtDNA gene content across eukaryotes.

Published in:

Biochemical Journal, 2024, v. 481, n. 15, p. 1015, doi. 10.1042/BCJ20230415

By:

Veeraragavan, Shibani;
Johansen, Maria;
Johnston, Iain G.

Publication type:

Article

HLA-MA: simple yet powerful matching of samples using HLA typing results.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2241, doi. 10.1093/bioinformatics/btx132

By:

Messerschmidt, Clemens;
Holtgrewe, Manuel;
Beule, Dieter

Publication type:

Article

SNPlice: variants that modulate Intron retention from RNA-sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1191, doi. 10.1093/bioinformatics/btu804

By:

Mudvari, Prakriti;
Movassagh, Mercedeh;
Kowsari, Kamran;
Seyfi, Ali;
Kokkinaki, Maria;
Edwards, Nathan J.;
Golestaneh, Nady;
Horvath, Anelia

Publication type:

Article

GenePainter v. 2.0 resolves the taxonomic distribution of intron positions.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1302, doi. 10.1093/bioinformatics/btu798

By:

Mühlhausen, Stefanie;
Hellkamp, Marcel;
Kollmar, Martin

Publication type:

Article

Supersplat—spliced RNA-seq alignment.

Published in:

Bioinformatics, 2010, v. 26, n. 12, p. 1500, doi. 10.1093/bioinformatics/btq206

By:

Bryant Jr, Douglas W.;
Shen, Rongkun;
Priest, Henry D.;
Wong, Weng-Keen;
Mockler, Todd C.

Publication type:

Article

Exon Array Analyzer: a web interface for Affymetrix exon array analysis.

Published in:

Bioinformatics, 2009, v. 25, n. 24, p. 3323, doi. 10.1093/bioinformatics/btp577

By:

Gellert, Pascal;
Uchida, Shizuka;
Braun, Thomas

Publication type:

Article

Affy exon tissues: exon levels in normal tissues in human, mouse and rat.

Published in:

Bioinformatics, 2009, v. 25, n. 18, p. 2442, doi. 10.1093/bioinformatics/btp414

By:

Pohl, Andrew A.;
Sugnet, Charles W.;
Clark, Tyson A.;
Smith, Kayla;
Fujita, Pauline A.;
Cline, Melissa S.

Publication type:

Article

Malin: maximum likelihood analysis of intron evolution in eukaryotes.

Published in:: Bioinformatics, 2008, v. 24, n. 13, p. 1538, doi. 10.1093/bioinformatics/btn226
Publication type:: Article

In search of lost introns.

Published in:

Bioinformatics, 2007, v. 23, n. 13, p. i87

By:

Miklós Csurös;
J. Andrew Holey;
Igor B. Rogozin

Publication type:

Article

Morphological, vocal and genetic divergence in the Cettia acanthizoides complex (Aves: Cettiidae).

Published in:

Zoological Journal of the Linnean Society, 2007, v. 149, n. 3, p. 437, doi. 10.1111/j.1096-3642.2007.00250.x

By:

ALSTRÖM, PER;
OLSSON, URBAN;
RASMUSSEN, PAMELA C.;
CHENG-TE YAO;
ERICSON, PER G. P.;
SUNDBERG, PER

Publication type:

Article

SPLITS: A New Program for Predicting Split and Intron-Containing tRNA Genes at the Genome Level.

Published in:

In Silico Biology, 2006, v. 6, n. 5, p. 411, doi. 10.3233/isb-00254

By:

Sugahara, Junichi;
Yachie, Nozomu;
Sekine, Yasuhiko;
Soma, Akiko;
Matsui, Motomu;
Tomita, Masaru;
Kanai, Akio

Publication type:

Article

First Exons and Introns – A Survey of GC Content and Gene Structure in the Human Genome.

Published in:

In Silico Biology, 2006, v. 6, n. 3, p. 237, doi. 10.3233/isb-00237

By:

Kalari, Krishna R.;
Casavant, Melanie;
Bair, Thomas B.;
Keen, Henry L.;
Comeron, Josep M.;
Casavant, Thomas L.;
Scheetz, Todd E.

Publication type:

Article

Assessing the geographic scale of genetic population management with microsatellites and introns in the clam Ruditapes decussatus.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 10, p. 3380, doi. 10.1002/ece3.2052

By:

Arias-Pérez, Alberto;
Cordero, David;
Borrell, Yaisel;
Sánchez, Jose Antonio;
Blanco, Gloria;
Freire, Ruth;
Insua, Ana;
Saavedra, Carlos

Publication type:

Article

Compact genes are highly expressed in the moss Physcomitrella patens.

Published in:

Journal of Evolutionary Biology, 2007, v. 20, n. 3, p. 1223, doi. 10.1111/j.1420-9101.2007.01301.x

By:

STENØIEN, H. K.

Publication type:

Article

Hypothetical protein FoDbp40 influences the growth and virulence of Fusarium oxysporum by regulating the expression of isocitrate lyase.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.1050637

By:

Busi Zhao;
Dan He;
Song Gao;
Yan Zhang;
Li Wang

Publication type:

Article

The Gene Rearrangement, Loss, Transfer, and Deep Intronic Variation in Mitochondrial Genomes of Conidiobolus.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.765733

By:

Nie, Yong;
Zhao, Heng;
Wang, Zimin;
Zhou, Zhengyu;
Liu, Xiaoyong;
Huang, Bo

Publication type:

Article

Physical Mapping of Wheat and Rye Expressed Sequence Tag—Simple Sequence Repeats on Wheat Chromosomes.

Published in:

Crop Science, 2007, v. 47, p. S3, doi. 10.2135/cropsci2006-06-0376tpg

By:

Mohan, Amita;
Goyal, Aakash;
Singh, Ravinder;
Balyan, Harinda S.;
Gupta, Pushpendra K.

Publication type:

Article

Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis.

Published in:

Journal of Experimental Botany, 2014, v. 65, n. 8, p. 1973, doi. 10.1093/jxb/eru085

By:

Cui, Zhibo;
Xu, Quan;
Wang, Xiaoxue

Publication type:

Article

Bacterial group I introns: mobile RNA catalysts.

Published in:

Mobile DNA, 2014, v. 5, n. 1, p. 1, doi. 10.1186/1759-8753-5-8

By:

Hausner, Georg;
Hafez, Mohamed;
Edgell, David R.

Publication type:

Article

Nuclear group I introns in self-splicing and beyond.

Published in:

Mobile DNA, 2013, v. 4, n. 1, p. 1, doi. 10.1186/1759-8753-4-17

By:

Hedberg, Annica;
Johansen, Steinar D.

Publication type:

Article

Large Introns of 5 to 10 Kilo Base Pairs Can Be Spliced out in Arabidopsis.

Published in:

Genes, 2017, v. 8, n. 8, p. 200, doi. 10.3390/genes8080200

By:

Ning Chang;
Qingqing Sun;
Jinglei Hu;
Chuanjing An;
Hongbo Gao

Publication type:

Article

Aberrant Single Exon Skipping is not Altered by Age in Exons of NF1, RABAC1, AATF or PCGF2 in Human Blood Cells and Fibroblasts.

Published in:

Genes, 2011, v. 2, n. 3, p. 562, doi. 10.3390/genes2030562

By:

Mellert, Kevin;
Uhl, Michael;
Högel, Josef;
Lamla, Markus;
Kemkemer, Ralf;
Kaufmann, Dieter

Publication type:

Article

A novel double deletion underscores the importance of characterizing end points of the CFTR large rearrangements.

Published in:

European Journal of Human Genetics, 2009, v. 17, n. 12, p. 1683, doi. 10.1038/ejhg.2009.73

By:

Taulan, Magali;
Guittard, Caroline;
Theze, Corinne;
Claustres, Mireille;
des Georges, Marie

Publication type:

Article

Novel homozygous ALS2 nonsense mutation (p.Gln715X) in sibs with infantile-onset ascending spastic paralysis: the first cases from northwestern Europe.

Published in:

European Journal of Human Genetics, 2008, v. 16, n. 11, p. 1407, doi. 10.1038/ejhg.2008.108

By:

Verschuuren-Bemelmans, Corien C.;
Winter, Pia;
Sival, Deborah A.;
Elting, Jan-Willem;
Brouwer, Oebele F.;
Müller, Ulrich

Publication type:

Article

Localizing a putative mutation as the major contributor to the development of sporadic Hirschsprung disease to the RET genomic sequence between the promoter region and exon 2.

Published in:

European Journal of Human Genetics, 2004, v. 12, n. 8, p. 604, doi. 10.1038/sj.ejhg.5201199

By:

Grzegorz M Burzynski;
Ilja M Nolte;
Jan Osinga;
Isabella Ceccherini;
Bas Twigt;
Saskia Maas;
Alice Brooks;
Joke Verheij;
Ivan Plaza Menacho;
Charles Hcm Buys;
Robert Mw Hofstra

Publication type:

Article

In NF1, CFTR, PER3, CARS and SYT7, alternatively included exons show higher conservation of surrounding intron sequences than constitutive exons.

Published in:

European Journal of Human Genetics, 2004, v. 12, n. 2, p. 139, doi. 10.1038/sj.ejhg.5201098

By:

Kaufmann, Dieter;
Kenner, Oliver;
Nurnberg, Peter;
Vogel, Walther;
Bartelt, Britta

Publication type:

Article

GeneWaltz--A new method for reducing the false positives of gene finding.

Published in:

BioData Mining, 2010, v. 3, p. 6, doi. 10.1186/1756-0381-3-6

By:

Misawa, Kazuharu;
Kikuno, Reiko F.

Publication type:

Article

A systematic comparison and evaluation of high density exon arrays and RNA-seq technology used to unravel the peripheral blood transcriptome of sickle cell disease.

Published in:

BMC Medical Genomics, 2012, v. 5, n. 1, p. 28, doi. 10.1186/1755-8794-5-28

By:

Raghavachar, Nalini;
Barb, Jennifer;
Yang, Yangqin;
Liu, Poching;
Woodhouse, Kimbely;
Levy, Daniel;
O'Donnell, Christopher J;
Munson, Peter J;
Kato, Gregory J

Publication type:

Article

Optimally splitting cases for training and testing high dimensional classifiers.

Published in:

BMC Medical Genomics, 2011, v. 4, n. 1, p. 31, doi. 10.1186/1755-8794-4-31

By:

Dobbin, Kevin K.;
Simon, Richard M.

Publication type:

Article

DYSTROFIA MIĘŚNIOWA DUCHENNE'A - W POSZUKIWANIU TERAPII.

Published in:

Przeglad Pediatryczny, 2009, v. 39, n. 1, p. 50

By:

Kochański, Andrzej Maciej

Publication type:

Article

Mapping of BnMs4 and BnRf to a common microsyntenic region of Arabidopsis thaliana chromosome 3 using intron polymorphism markers.

Published in:

Theoretical & Applied Genetics, 2012, v. 124, n. 7, p. 1193, doi. 10.1007/s00122-011-1779-1

By:

Xia, Shengqian;
Cheng, Ling;
Zu, Feng;
Dun, Xiaoling;
Zhou, Zhengfu;
Yi, Bin;
Wen, Jing;
Ma, Chaozhi;
Shen, Jinxiong;
Tu, Jinxing;
Fu, Tingdong

Publication type:

Article

Cloning and characterization of phosphorus starvation inducible Brassica napus PURPLE ACID PHOSPHATASE 12 gene family, and imprinting of a recently evolved MITE-minisatellite twin structure.

Published in:

Theoretical & Applied Genetics, 2008, v. 117, n. 6, p. 963, doi. 10.1007/s00122-008-0836-x

By:

Kun Lu;
You-Rong Chai;
Kai Zhang;
Rui Wang;
Li Chen;
Bo Lei;
Jun Lu;
Xin-Fu Xu;
Jia-Na Li

Publication type:

Article

DNase I-hypersensitive exons colocalize with promoters and distal regulatory elements.

Published in:

Nature Genetics, 2013, v. 45, n. 8, p. 852, doi. 10.1038/ng.2677

By:

Mercer, Tim R;
Edwards, Stacey L;
Clark, Michael B;
Neph, Shane J;
Wang, Hao;
Stergachis, Andrew B;
John, Sam;
Sandstrom, Richard;
Li, Guoliang;
Sandhu, Kuljeet S;
Ruan, Yijun;
Nielsen, Lars K;
Mattick, John S;
Stamatoyannopoulos, John A

Publication type:

Article

X-cess of variants in XLMR.

Published in:

Nature Genetics, 2009, v. 41, n. 5, p. 510, doi. 10.1038/ng0509-510

By:

Nelson, David L.;
Gibbs, Richard A.

Publication type:

Article

SLC2A9 influences uric acid concentrations with pronounced sex-specific effects.

Published in:

Nature Genetics, 2008, v. 40, n. 4, p. 430, doi. 10.1038/ng.107

By:

Döring, Angela;
Gieger, Christian;
Mehta, Divya;
Gohlke, Henning;
Prokisch, Holger;
Coassin, Stefan;
Fischer, Guido;
Henke, Kathleen;
Klopp, Norman;
Kronenberg, Florian;
Paulweber, Bernhard;
Pfeufer, Arne;
Rosskopf, Dieter;
Völzke, Henry;
Illig, Thomas;
Meitinger, Thomas;
Wichmann, H.-Erich;
Meisinger, Christa

Publication type:

Article