Works matching DE "SPLICEOSOMES"

Results: 502

Assessment of SF3B1 Expression as a Prognostic Marker for Neoadjuvant Chemotherapy Response in Stage III Triple-Negative Breast Cancer.

Published in:

Reports of Biochemistry & Molecular Biology, 2025, v. 13, n. 4, p. 570

By:

Wihandani, Desak Made;
Tusta Adiputra, Putu Anda;
Wira Wiguna, Gede Wikania;
Septiawan Saputra, Putu Gede;
Weda Yani, Made Violin;
Widya Anjani, Ida Ayu;
Sudartha Putra, Wayan Ardyan;
Supadmanaba, Gede Putu

Publication type:

Article

Chromosome Mapping of U2 snDNA in Species of Leptodactylus (Anura, Leptodactylidae).

Published in:

Cytogenetic & Genome Research, 2021, v. 161, n. 1/2, p. 63, doi. 10.1159/000515047

By:

Gazoni, Thiago;
Dorigon, Nathália S.;
da Silva, Marcelo J.;
Cholak, Luiza R.;
Haddad, Célio F.B.;
Parise-Maltempi, Patricia P.

Publication type:

Article

Two pear auxin-repressed protein genes, PpARP1 and PpARP2, are predominantly expressed in fruit and involved in response to salicylic acid signaling.

Published in:

Plant Cell, Tissue & Organ Culture, 2013, v. 114, n. 2, p. 279, doi. 10.1007/s11240-013-0321-3

By:

Shi, Hai-Yan;
Zhang, Yu-Xing;
Chen, Liang

Publication type:

Article

RNA Secondary Structure-Based Design of Antisense Peptide Nucleic Acids for Modulating Disease-Associated Aberrant Tau Pre-mRNA Alternative Splicing.

Published in:

Molecules, 2019, v. 24, n. 16, p. 3020, doi. 10.3390/molecules24163020

By:

Ong, Alan Ann Lerk;
Tan, Jiazi;
Bhadra, Malini;
Dezanet, Clément;
Patil, Kiran M.;
Chong, Mei Sian;
Kierzek, Ryszard;
Decout, Jean-Luc;
Roca, Xavier;
Chen, Gang;
Yavin, Eylon

Publication type:

Article

COSSMO: predicting competitive alternative splice site selection using deep learning.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i429, doi. 10.1093/bioinformatics/bty244

By:

Bretschneider, Hannes;
Gandhi, Shreshth;
Deshwar, Amit G;
Zuberi, Khalid;
Frey, Brendan J

Publication type:

Article

Rail-RNA: scalable analysis of RNA-seq splicing and coverage.

Published in:

Bioinformatics, 2017, v. 33, n. 24, p. 4033, doi. 10.1093/bioinformatics/btw575

By:

Nellore, Abhinav;
Collado-Torres, Leonardo;
Jaffe, Andrew E.;
Alquicira-Hernández, José;
Wilks, Christopher;
Pritt, Jacob;
Morton, James;
Leek, Jeffrey T.;
Langmead, Ben

Publication type:

Article

RNA Splicing Factor Mutations That Cause Retinitis Pigmentosa Result in Circadian Dysregulation.

Published in:

Journal of Biological Rhythms, 2020, v. 35, n. 1, p. 72, doi. 10.1177/0748730419887876

By:

Shakhmantsir, Iryna;
Dooley, Scott J.;
Kishore, Siddharth;
Chen, Dechun;
Pierce, Eric;
Bennett, Jean;
Sehgal, Amita

Publication type:

Article

Intronization Signatures in Coding Exons Reveal the Evolutionary Fluidity of Eukaryotic Gene Architecture.

Published in:

Microorganisms, 2022, v. 10, n. 10, p. 1901, doi. 10.3390/microorganisms10101901

By:

Ryll, Judith;
Rothering, Rebecca;
Catania, Francesco

Publication type:

Article

Genome-Wide Identification, Expression Profile, and Alternative Splicing Analysis of CAMTA Family Genes in Cucumber (Cucumis sativus L.).

Published in:

Agronomy, 2021, v. 11, n. 9, p. 1827, doi. 10.3390/agronomy11091827

By:

Gao, Rong;
Luo, Yanyan;
Yun, Fahong;
Wu, Xuetong;
Wang, Peng;
Liao, Weibiao

Publication type:

Article

Multi-step recognition of potential 5' splice sites by the Saccharomyces cerevisiae U1 snRNP.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.70534

By:

Hansen, Sarah R.;
White, David S.;
Scalf, Mark;
Corrêa, Ivan R.;
Smith, Lloyd M.;
Hoskins, Aaron A.

Publication type:

Article

Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.73888

By:

Kumar, Jayashree;
Lackey, Lela;
Waldern, Justin M.;
Dey, Abhishek;
Mustoe, Anthony M.;
Weeks, Kevin M.;
Mathews, David H.;
Laederach, Alain

Publication type:

Article

Retained introns in phototransduction genes of 5xFAD mouse retina suggest vision impairment as an early diagnostic marker for Alzheimer's disease.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-11065-z

By:

Lee, Hyun-Min;
Kim, Jinho;
Kim, Ji-Young;
An, Mi-Jin;
Shin, Geun-Seup;
Jo, Ah-Ra;
Park, Yuna;
Kim, Chul-Hong;
Hwangbo, Yujeong;
Lee, Ju-Hyun;
Hong, Tae Kyung;
Lee, Kun Ho;
Rhee, Sangmyung;
Kim, Jung-Woong

Publication type:

Article

Global Screening of CK2 Kinase Substrates by an Integrated Phosphoproteomics Workflow.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep03460

By:

Yangyang Bian;
Mingliang Ye;
Chunli Wang;
Kai Cheng;
Chunxia Song;
Mingming Dong;
Yanbo Pan;
Hongqiang Qin;
Hanfa Zou

Publication type:

Article

Prenatal Diagnosis of Fryns Syndrome through Identification of Two Novel Splice Variants in the PIGN Gene—A Case Series.

Published in:

Life (2075-1729), 2024, v. 14, n. 5, p. 628, doi. 10.3390/life14050628

By:

Marchetto, Aruna;
Leidescher, Susanne;
van Hoi, Theresia;
Hirschberger, Niklas;
Vogel, Florian;
Köhler, Siegmund;
Bedei, Ivonne Alexandra;
Axt-Fliedner, Roland;
Shoukier, Moneef;
Keil, Corinna

Publication type:

Article

Regulation of Pre-mRNA Splicing: Indispensable Role of Post-Translational Modifications of Splicing Factors.

Published in:

Life (2075-1729), 2023, v. 13, n. 3, p. 604, doi. 10.3390/life13030604

By:

Kretova, Miroslava;
Selicky, Tomas;
Cipakova, Ingrid;
Cipak, Lubos

Publication type:

Article

RNA-seq analysis reveals transcriptome reprogramming and alternative splicing during early response to salt stress in tomato root.

Published in:

Frontiers in Plant Science, 2024, p. 01, doi. 10.3389/fpls.2024.1394223

By:

Jianghuang Gan;
Yongqi Qiu;
Yilin Tao;
Laining Zhang;
Okita, Thomas W.;
Yanyan Yan;
Li Tian

Publication type:

Article

Genome-wide expression analysis of novel heat-responsive microRNAs and their targets in contrasting wheat genotypes at reproductive stage under terminal heat stress.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1328114

By:

Saroha, Monika;
Arya, Aditi;
Singh, Gyanendra;
Sharma, Pradeep

Publication type:

Article

Therapeutic Targeting of Alternative Splicing: A New Frontier in Cancer Treatment.

Published in:

Frontiers in Oncology, 2022, v. 12, p. 1, doi. 10.3389/fonc.2022.868664

By:

Murphy, Anthony J.;
Li, Alex H.;
Li, Peichao;
Sun, Hong

Publication type:

Article

U5 snRNA Interactions With Exons Ensure Splicing Precision.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.676971

By:

Artemyeva-Isman, Olga V.;
Porter, Andrew C. G.

Publication type:

Article

Complex RNA Secondary Structures Mediate Mutually Exclusive Splicing of Coleoptera Dscam1.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.644238

By:

Dong, Haiyang;
Li, Lei;
Zhu, Xiaohua;
Shi, Jilong;
Fu, Ying;
Zhang, Shixin;
Shi, Yang;
Xu, Bingbing;
Zhang, Jian;
Shi, Feng;
Jin, Yongfeng

Publication type:

Article

Complex RNA Secondary Structures Mediate Mutually Exclusive Splicing of Coleoptera Dscam1.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.644238

By:

Dong, Haiyang;
Li, Lei;
Zhu, Xiaohua;
Shi, Jilong;
Fu, Ying;
Zhang, Shixin;
Shi, Yang;
Xu, Bingbing;
Zhang, Jian;
Shi, Feng;
Jin, Yongfeng

Publication type:

Article

Spliceosomal snRNA Epitranscriptomics.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.652129

By:

Morais, Pedro;
Adachi, Hironori;
Yu, Yi-Tao

Publication type:

Article

The Role of the U5 snRNP in Genetic Disorders and Cancer.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.636620

By:

Wood, Katherine A.;
Eadsforth, Megan A.;
Newman, William G.;
O'Keefe, Raymond T.

Publication type:

Article

Construction of an RNA-Binding Protein-Related Prognostic Model for Pancreatic Adenocarcinoma Based on TCGA and GTEx Databases.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.610350

By:

Wen, Xin;
Shao, Zhiying;
Chen, Shuyi;
Wang, Wei;
Wang, Yan;
Jiang, Jinghua;
Ma, Qinggong;
Zhang, Longzhen

Publication type:

Article

Editorial: RNA Splicing and Backsplicing: Disease and Therapy.

Published in:

2020

By:

Asselta, Rosanna;
Duga, Stefano;
Velasco, Eladio Andrés;
Buratti, Emanuele

Publication type:

Editorial

Novel Compound Heterozygous TMPRSS15 Gene Variants Cause Enterokinase Deficiency.

Published in:

Frontiers in Genetics, 2020, v. 11, p. N.PAG, doi. 10.3389/fgene.2020.538778

By:

Wang, Lan;
Zhang, Dan;
Fan, Cheng;
Zhou, Xiaoying;
Liu, Zhifeng;
Zheng, Bixia;
Zhu, Li;
Jin, Yu

Publication type:

Article

Dynamic Supraspliceosomes Are Assembled on Different Transcripts Regardless of Their Intron Number and Splicing State.

Published in:

Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00409

By:

Sebbag-Sznajder, Naama;
Brody, Yehuda;
Hochberg-Laufer, Hodaya;
Shav-Tal, Yaron;
Sperling, Joseph;
Sperling, Ruth

Publication type:

Article

PRPF8 defects cause missplicing in myeloid malignancies.

Published in:

Leukemia (08876924), 2015, v. 29, n. 1, p. 126, doi. 10.1038/leu.2014.144

By:

Kurtovic-Kozaric, A;
Przychodzen, B;
Singh, J;
Konarska, M M;
Clemente, M J;
Otrock, Z K;
Nakashima, M;
Hsi, E D;
Yoshida, K;
Shiraishi, Y;
Chiba, K;
Tanaka, H;
Miyano, S;
Ogawa, S;
Boultwood, J;
Makishima, H;
Maciejewski, J P;
Padgett, R A

Publication type:

Article

CALR vs JAK2 vs MPL-mutated or triple-negative myelofibrosis: clinical, cytogenetic and molecular comparisons.

Published in:

Leukemia (08876924), 2014, v. 28, n. 7, p. 1472, doi. 10.1038/leu.2014.3

By:

Tefferi, A;
Lasho, T L;
Finke, C M;
Knudson, R A;
Ketterling, R;
Hanson, C H;
Maffioli, M;
Caramazza, D;
Passamonti, F;
Pardanani, A

Publication type:

Article

Mayo prognostic model for WHO-defined chronic myelomonocytic leukemia: ASXL1 and spliceosome component mutations and outcomes.

Published in:

Leukemia (08876924), 2013, v. 27, n. 7, p. 1504, doi. 10.1038/leu.2013.88

By:

Patnaik, M M;
Padron, E;
LaBorde, R R;
Lasho, T L;
Finke, C M;
Hanson, C A;
Hodnefield, J M;
Knudson, R A;
Ketterling, R P;
Al-kali, A;
Pardanani, A;
Ali, N A;
Komroji, R S;
Tefferi, A

Publication type:

Article

Mutations of epigenetic regulators and of the spliceosome machinery in therapy-related myeloid neoplasms and in acute leukemias evolved from chronic myeloproliferative diseases.

Published in:

Leukemia (08876924), 2013, v. 27, n. 4, p. 982, doi. 10.1038/leu.2012.267

By:

Voso, M T;
Fabiani, E;
Fianchi, L;
Falconi, G;
Criscuolo, M;
Santangelo, R;
Chiusolo, P;
Betti, S;
D'Alo', F;
Hohaus, S;
De Stefano, V;
Leone, G

Publication type:

Article

Emerging roles of the spliceosomal machinery in myelodysplastic syndromes and other hematological disorders.

Published in:

Leukemia (08876924), 2012, v. 26, n. 12, p. 2447, doi. 10.1038/leu.2012.130

By:

Visconte, V;
Makishima, H;
Maciejewski, J P;
Tiu, R V

Publication type:

Article

Spliceosome and other novel mutations in chronic lymphocytic leukemia and myeloid malignancies.

Published in:

Leukemia (08876924), 2012, v. 26, n. 9, p. 2027, doi. 10.1038/leu.2012.86

By:

Damm, F;
Nguyen-Khac, F;
Fontenay, M;
Bernard, O A

Publication type:

Article

Molecular basis for the activation of human spliceosome.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50785-0

By:

Zhan, Xiechao;
Lu, Yichen;
Shi, Yigong

Publication type:

Article

HIV co-opts a cellular antiviral mechanism, activation of stress kinase PKR by its RNA, to enable splicing of rev/tat mRNA.

Published in:

Cell & Bioscience, 2023, v. 13, n. 1, p. 1, doi. 10.1186/s13578-023-00972-1

By:

Namer, Lise Sarah;
Harwig, Alex;
Heynen, Stephan P.;
Das, Atze T.;
Berkhout, Ben;
Kaempfer, Raymond

Publication type:

Article

N6-methyladenosine-mediated CELF2 regulates CD44 alternative splicing affecting tumorigenesis via ERAD pathway in pancreatic cancer.

Published in:

Cell & Bioscience, 2022, v. 12, n. 1, p. 1, doi. 10.1186/s13578-022-00844-0

By:

Lai, Shihui;
Wang, Yan;
Li, Ting;
Dong, Yihong;
Lin, Yihao;
Wang, Liang;
Weng, Shangeng;
Zhang, Xiang;
Lin, Chengjie

Publication type:

Article

Identification of a novel S6K1 splice variant coding for the p60-S6K1 isoform.

Published in:

Biopolymers & Cell, 2019, v. 35, n. 2, p. 99, doi. 10.7124/bc.00099B

By:

Zaiets, I. V.;
Holiar, V. V.;
Filonenko, V. V.

Publication type:

Article

Elucidating differential nano-bio interactions of multi-walled andsingle-walled carbon nanotubes using subcellular proteomics.

Published in:

Nanotoxicology, 2018, v. 12, n. 6, p. 554, doi. 10.1080/17435390.2018.1465141

By:

Ndika, Joseph D. T.;
Sund, Jukka;
Alenius, Harri;
Puustinen, Anne

Publication type:

Article

Differences in DNA methylation status explain phenotypic variability in patients with 5p− syndrome.

Published in:

BMC Research Notes, 2024, v. 17, n. 1, p. 1, doi. 10.1186/s13104-024-06734-7

By:

Almeida, Vanessa Tavares;
Chehimi, Samar N.;
Carvalho, Gleyson F. S.;
Gasparini, Yanca;
Nascimento, Amom M.;
Vieira, Lucas L.;
Wolff, Beatriz M.;
Montenegro, Marília M.;
Kulikowski, Leslie D.

Publication type:

Article

Snord94 expression level alters methylation at C<sup>62</sup> in snRNA U6.

Published in:

PLoS ONE, 2019, v. 14, n. 12, p. 1, doi. 10.1371/journal.pone.0226035

By:

Ogren, Allison;
Kibiryeva, Nataliya;
Marshall, Jennifer;
O'Brien, James E.;
Bittel, Douglas C.

Publication type:

Article

Complex alternative splicing of human Endonuclease V mRNA, but evidence for only a single protein isoform.

Published in:

PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0225081

By:

Berges, Natalia;
Nawaz, Meh Sameen;
Børresdatter Dahl, Tuva;
Hagen, Lars;
Bjørås, Magnar;
Laerdahl, Jon K.;
Alseth, Ingrun

Publication type:

Article

Ultra-deep sequencing reveals pre-mRNA splicing as a sequence driven high-fidelity process.

Published in:

PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0223132

By:

Reynolds, Derrick J.;
Hertel, Klemens J.

Publication type:

Article

Testing the Cre-mediated genetic switch for the generation of conditional knock-in mice.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0213660

By:

Capulli, Mattia;
Costantini, Rossella;
Sonntag, Stephan;
Maurizi, Antonio;
Paganini, Chiara;
Monti, Luca;
Forlino, Antonella;
Shmerling, Doron;
Teti, Anna;
Rossi, Antonio

Publication type:

Article

Integrated transcriptomic and proteomic analyses of plerocercoid and adult Spirometra mansoni reveal potential important pathways in the development of the medical tapeworm.

Published in:

Parasites & Vectors, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13071-023-05941-8

By:

Wang, Rui Jie;
Li, Wen;
Liu, Shi Nan;
Wang, Si Yao;
Jiang, Peng;
Wang, Zhong Quan;
Zhang, Xi

Publication type:

Article

RETRACTED ARTICLE: Complex Effect of RNA Spliceosome Inhibition on Amyloid Precursor Protein Expression.

Published in:

Neurochemical Research, 2016, v. 41, n. 12, p. 3417, doi. 10.1007/s11064-016-1993-y

By:

Zhang, Ning;
He, Ling;
Feng, Helin;
Kong, Yan;
Wang, Jin;
Zhang, Jinming

Publication type:

Article

Polycistronic Expression and RNA-Binding Specificity of the C. elegans Homologue ofthe Spliceosome-Associated Protein SAP49.

Published in:

Journal of Biochemistry, 1997, v. 121, n. 4, p. 739, doi. 10.1093/oxfordjournals.jbchem.a021648

By:

Tanaka, Yoshimi;
Ohta, Atsunori;
Terashima, Kazuhiro;
Sakamoto, Hiroshi

Publication type:

Article

Investigation of 305 patients with myelodysplastic syndromes and 20q deletion for associated cytogenetic and molecular genetic lesions and their prognostic impact.

Published in:

British Journal of Haematology, 2014, v. 164, n. 6, p. 822, doi. 10.1111/bjh.12710

By:

Bacher, Ulrike;
Haferlach, Torsten;
Schnittger, Susanne;
Zenger, Melanie;
Meggendorfer, Manja;
Jeromin, Sabine;
Roller, Andreas;
Grossmann, Vera;
Krauth, Maria‐Theresa;
Alpermann, Tamara;
Kern, Wolfgang;
Haferlach, Claudia

Publication type:

Article

Defects in spliceosomal machinery: a new pathway of leukaemogenesis.

Published in:

British Journal of Haematology, 2012, v. 158, n. 2, p. 165, doi. 10.1111/j.1365-2141.2012.09158.x

By:

Maciejewski, Jaroslaw P.;
Padgett, Richard A.

Publication type:

Article

Identifying cellular RNA-binding proteins during infection uncovers a role for MKRN2 in influenza mRNA trafficking.

Published in:

PLoS Pathogens, 2024, v. 20, n. 5, p. 1, doi. 10.1371/journal.ppat.1012231

By:

Bonazza, Stefano;
Coutts, Hannah Leigh;
Sukumar, Swathi;
Turkington, Hannah Louise;
Courtney, David Gary

Publication type:

Article

Abnormal global alternative RNA splicing in COVID-19 patients.

Published in:

PLoS Genetics, 2022, v. 18, n. 4, p. 1, doi. 10.1371/journal.pgen.1010137

By:

Wang, Changli;
Chen, Lijun;
Chen, Yaobin;
Jia, Wenwen;
Cai, Xunhui;
Liu, Yufeng;
Ji, Fenghu;
Xiong, Peng;
Liang, Anyi;
Liu, Ren;
Guan, Yuanlin;
Cheng, Zhongyi;
Weng, Yejing;
Wang, Weixin;
Duan, Yaqi;
Kuang, Dong;
Xu, Sanpeng;
Cai, Hanghang;
Xia, Qin;
Yang, Dehua

Publication type:

Article