Works matching DE "SOURCE code"

Results: 3706

ARDN: Attention Re-distribution Network for Visual Question Answering.

Published in:

Arabian Journal for Science & Engineering (Springer Science & Business Media B.V. ), 2025, v. 50, n. 10, p. 6909, doi. 10.1007/s13369-024-09067-6

By:

Yi, Jinyang;
Han, Dezhi;
Chen, Chongqing;
Shen, Xiang;
Zong, Liang

Publication type:

Article

A multi-view graph convolutional network framework based on adaptive adjacency matrix and multi-strategy fusion mechanism for identifying spatial domains Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf172

By:

Fu, Yuhan;
Nan, Mengdi;
Ren, Qing;
Chen, Xiang;
Gao, Jie

Publication type:

Article

CancerTrialMatch: a computational resource for the management of biomarker-based clinical trials at a community cancer center Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf144

By:

Swaminathan, Padmapriya;
Amallraja, Anu;
Kapadia, Shivani;
Williams, Casey B;
Meißner, Tobias

Publication type:

Article

Sawfish: improving long-read structural variant discovery and genotyping with local haplotype modeling Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf136

By:

Saunders, Christopher T;
Holt, James M;
Baker, Daniel N;
Lake, Juniper A;
Belyeu, Jonathan R;
Kronenberg, Zev;
Rowell, William J;
Eberle, Michael A

Publication type:

Article

Negative dataset selection impacts machine learning-based predictors for multiple bacterial species promoters Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf135

By:

González, Marcelo;
Durán, Roberto E;
Seeger, Michael;
Araya, Mauricio;
Jara, Nicolás

Publication type:

Article

wgatools: an ultrafast toolkit for manipulating whole-genome alignments Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf132

By:

Wei, Wenjie;
Gui, Songtao;
Yang, Jian;
Garrison, Erik;
Yan, Jianbing;
Liu, Hai-Jun

Publication type:

Article

Benchmarking algorithms for spatially variable gene identification in spatial transcriptomics Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf131

By:

Chen, Xuanwei;
Ran, Qinghua;
Tang, Junjie;
Chen, Zihao;
Huang, Siyuan;
Shi, Xingjie;
Xi, Ruibin

Publication type:

Article

MNMO: discover driver genes from a multi-omics data based-multi-layer network Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf134

By:

Deng, Zheng;
Wu, Jingli;
Chen, Xiaorong;
Li, Gaoshi;
Liu, Jiafei;
Hu, Zhipeng;
Li, Rongyuan;
Deng, Wansu

Publication type:

Article

RNALoc-LM: RNA subcellular localization prediction using pre-trained RNA language model Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf127

By:

Zeng, Min;
Zhang, Xinyu;
Li, Yiming;
Lu, Chengqian;
Yin, Rui;
Guo, Fei;
Li, Min

Publication type:

Article

A framework for analyzing EEG data using high-dimensional tests Open Access.

Published in:

Bioinformatics, 2025, v. 41, n. 4, p. 1, doi. 10.1093/bioinformatics/btaf109

By:

Zhang, Qiuyan;
Xiang, Wenjing;
Yang, Bo;
Yang, Hu

Publication type:

Article

Generating diversity and securing completeness in algorithmic retrosynthesis.

Published in:

Journal of Cheminformatics, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13321-025-00981-x

By:

Mrugalla, Florian;
Franz, Christopher;
Alber, Yannic;
Mogk, Georg;
Villalba, Martín;
Mrziglod, Thomas;
Schewior, Kevin

Publication type:

Article

EVALUATING COMBINED INFLUENCE OF WEIGHTED ANALYSIS CLASS DIAGRAM METRICS ON EARLY SOFTWARE SIZE ESTIMATION.

Published in:

Computing & Informatics, 2025, v. 44, n. 1, p. 26, doi. 10.31577/cai_2025_1_26

By:

DAUD, Marriam;
MALIK, ALI AFZAL

Publication type:

Article

Fault-Aware Test Case Prioritization in Software Testing Using Jaya Archimedes Optimization Algorithm.

Published in:

Journal of Electronic Testing, 2025, v. 41, n. 1, p. 41, doi. 10.1007/s10836-025-06157-7

By:

Sugave, Shounak Rushikesh;
Kulkarni, Yogesh R.;
Jagdale, Balaso;
Gutte, Vitthal

Publication type:

Article

EMSNet: Extremely multi-scale network for salient object detection.

Published in:

Multimedia Tools & Applications, 2025, v. 84, n. 14, p. 13545, doi. 10.1007/s11042-024-19503-2

By:

Zhou, Chiheng;
Wang, Zhengkai;
Zhou, Yongxia;
Pan, Chen

Publication type:

Article

Enhancing smart contract security using a code representation and GAN based methodology.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-99267-3

By:

Murala, Dileep Kumar;
Loucif, Samia;
Rao, K. Vara Prasada;
Hamam, Habib

Publication type:

Article

GraphATC: advancing multilevel and multi-label anatomical therapeutic chemical classification via atom-level graph learning.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf194

By:

Zhang, Wengyu;
Tian, Qi;
Cao, Yi;
Fan, Wenqi;
Jiang, Dongmei;
Wang, Yaowei;
Li, Qing;
Wei, Xiao-Yong

Publication type:

Article

DMGAT: predicting ncRNA-drug resistance associations based on diffusion map and heterogeneous graph attention network.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf179

By:

Liu, Tingyu;
Chen, Qiuhao;
Liu, Renjie;
Sun, Yuzhi;
Wang, Yadong;
Zhu, Yan;
Zhao, Tianyi

Publication type:

Article

DeepHeteroCDA: circRNA–drug sensitivity associations prediction via multi-scale heterogeneous network and graph attention mechanism.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf159

By:

Huang, Zhijian;
Chen, Kai;
Xiao, Xiaojun;
Fan, Ziyu;
Zhang, Yuanpeng;
Deng, Lei

Publication type:

Article

A comprehensive review and evaluation of species richness estimation.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf158

By:

Schmitz, Johanna Elena;
Rahmann, Sven

Publication type:

Article

Comprehensive benchmarking of large language models for RNA secondary structure prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf137

By:

Zablocki, Luciano I;
Bugnon, Leandro A;
Gerard, Matias;
Persia, Leandro Di;
Stegmayer, Georgina;
Milone, Diego H

Publication type:

Article

EMcnv: enhancing CNV detection performance through ensemble strategies with heterogeneous meta-graph neural networks.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf135

By:

Wang, Xuwen;
Chang, Zhili;
Liu, Yuqian;
Wang, Shenjie;
Zhu, Xiaoyan;
Shao, Yang;
Wang, Jiayin

Publication type:

Article

PCLSurv: a prototypical contrastive learning-based multi-omics data integration model for cancer survival prediction.

Published in:

Briefings in Bioinformatics, 2025, v. 26, n. 2, p. 1, doi. 10.1093/bib/bbaf124

By:

Li, Zhimin;
Chen, Wenlan;
Zhong, Hai;
Liang, Cheng

Publication type:

Article

Static control [source-code analysis].

Published in:

Electronics Systems & Software, 2006, v. 4, n. 4, p. 30, doi. 10.1049/ess:20060406

By:

Cothard, A.

Publication type:

Article

NDMNN: A novel deep residual network based MNN method to remove batch effects from scRNA-seq data.

Published in:

Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 3, p. 1, doi. 10.1142/S021972002450015X

By:

Ma, Yupeng;
Pei, Yongzhen

Publication type:

Article

iRNA5hmC-HOC: High-order correlation information for identifying RNA 5-hydroxymethylcytosine modification.

Published in:: Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 4, p. 1, doi. 10.1142/S0219720022500172
Publication type:: Article

Transforming OMIC features for classification using siamese convolutional networks.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 3, p. 1, doi. 10.1142/S0219720022500135

By:

Wang, Qian;
Duan, Meiyu;
Fan, Yusi;
Liu, Shuai;
Ren, Yanjiao;
Huang, Lan;
Zhou, Fengfeng

Publication type:

Article

Denoising of scanning electron microscope images for biological ultrastructure enhancement.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 3, p. 1, doi. 10.1142/S021972002250007X

By:

Chang, Sheng;
Shen, Lijun;
Li, Linlin;
Chen, Xi;
Han, Hua

Publication type:

Article

A protein succinylation sites prediction method based on the hybrid architecture of LSTM network and CNN.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 2, p. 1, doi. 10.1142/S0219720022500032

By:

Zhang, Die;
Wang, Shunfang

Publication type:

Article

O-glycosylation site prediction for Homo sapiens by combining properties and sequence features with support vector machine.

Published in:

Journal of Bioinformatics & Computational Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1142/S0219720021500293

By:

Zhu, Yan;
Yin, Shuwan;
Zheng, Jia;
Shi, Yixia;
Jia, Cangzhi

Publication type:

Article

AUSPP: A universal short-read pre-processing package.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 6, p. N.PAG, doi. 10.1142/S0219720019500379

By:

Gao, Lei;
Wu, Cong;
Liu, Lin

Publication type:

Article

Fast and memory efficient approach for mapping NGS reads to a reference genome.

Published in:

Journal of Bioinformatics & Computational Biology, 2019, v. 17, n. 2, p. N.PAG, doi. 10.1142/S0219720019500082

By:

Kumar, Sanjeev;
Agarwal, Suneeta;
Ranvijay

Publication type:

Article

phraSED-ML: A paraphrased, human-readable adaptation of SED-ML.

Published in:

Journal of Bioinformatics & Computational Biology, 2016, v. 14, n. 6, p. -1, doi. 10.1142/S0219720016500359

By:

Choi, Kiri;
Smith, Lucian P.;
Medley, J. Kyle;
Sauro, Herbert M.

Publication type:

Article

FIBR3DEmul—an open-access simulation solution for 3D printing processes of FDM machines with 3+ actuated axes.

Published in:

International Journal of Advanced Manufacturing Technology, 2020, v. 106, n. 7/8, p. 3609, doi. 10.1007/s00170-019-04713-y

By:

Faria, Carlos;
Fonseca, Jaime;
Bicho, Estela

Publication type:

Article

Performant almost-latch-free data structures using epoch protection in more depth.

Published in:

VLDB Journal International Journal on Very Large Data Bases, 2024, v. 33, n. 6, p. 1793, doi. 10.1007/s00778-024-00859-8

By:

Li, Tianyu;
Chandramouli, Badrish;
Madden, Samuel

Publication type:

Article

DB-BERT: making database tuning tools "read" the manual.

Published in:

VLDB Journal International Journal on Very Large Data Bases, 2024, v. 33, n. 4, p. 1085, doi. 10.1007/s00778-023-00831-y

By:

Trummer, Immanuel

Publication type:

Article

A Pareto optimal Bloom filter family with hash adaptivity.

Published in:

VLDB Journal International Journal on Very Large Data Bases, 2023, v. 32, n. 3, p. 525, doi. 10.1007/s00778-022-00755-z

By:

Li, Meng;
Xie, Rongbiao;
Chen, Deyi;
Dai, Haipeng;
Gu, Rong;
Huang, He;
Dou, Wanchun;
Chen, Guihai

Publication type:

Article

Virtual element method (VEM)-based topology optimization: an integrated framework.

Published in:

Structural & Multidisciplinary Optimization, 2020, v. 62, n. 3, p. 1089, doi. 10.1007/s00158-019-02268-w

By:

Chi, Heng;
Pereira, Anderson;
Menezes, Ivan F. M.;
Paulino, Glaucio H.

Publication type:

Article

An enhanced deep learning approach for vascular wall fracture analysis.

Published in:

Archive of Applied Mechanics, 2024, v. 94, n. 9, p. 2519, doi. 10.1007/s00419-024-02589-3

By:

Tragoudas, Alexandros;
Alloisio, Marta;
Elsayed, Elsayed S.;
Gasser, T. Christian;
Aldakheel, Fadi

Publication type:

Article

An iterative method for elliptic problems with rapidly oscillating coefficients.

Published in:

ESAIM: Mathematical Modelling & Numerical Analysis (ESAIM: M2AN), 2021, v. 55, n. 1, p. 37, doi. 10.1051/m2an/2020080

By:

Armstrong, Scott;
Hannukainen, Antti;
Kuusi, Tuomo;
Mourrat, Jean-Christophe

Publication type:

Article

Verification of strain gradient elasticity computation by analytical solutions.

Published in:

ZAMM -- Journal of Applied Mathematics & Mechanics / Zeitschrift für Angewandte Mathematik und Mechanik, 2021, v. 101, n. 12, p. 1, doi. 10.1002/zamm.202100023

By:

Yang, Hua;
Timofeev, Dmitry;
Abali, B. Emek;
Li, Baotong;
Müller, Wolfgang H.

Publication type:

Article

Know what you don't need: Single-Shot Meta-Pruning for attention heads.

Published in:

AI Open, 2021, p. 36, doi. 10.1016/j.aiopen.2021.05.003

By:

Zhengyan Zhang;
Fanchao Qi;
Zhiyuan Liu;
Qun Liu;
Maosong Sun

Publication type:

Article

A Common Language of Software Evolution in Repositories (CLOSER).

Published in:

Software (2674-113X), 2025, v. 4, n. 1, p. 1, doi. 10.3390/software4010001

By:

Garrity, Jordan;
Cutting, David

Publication type:

Article

A Fuzzing Tool Based on Automated Grammar Detection.

Published in:

Software (2674-113X), 2024, v. 3, n. 4, p. 569, doi. 10.3390/software3040028

By:

Song, Jia;
Alves-Foss, Jim

Publication type:

Article

Opening Software Research Data 5Ws+1H.

Published in:

Software (2674-113X), 2024, v. 3, n. 4, p. 411, doi. 10.3390/software3040021

By:

Terzi, Anastasia;
Bibi, Stamatia

Publication type:

Article

Binary Wyner-Ziv and CEO Problem Coding Under the Hamming Distortion Criterion.

Published in:

International Journal of Industrial Electronics Control & Optimization, 2024, v. 7, n. 2, p. 85

By:

Nangir, Mahdi

Publication type:

Article

基于SSH2 框架的智慧建筑施工信息查询系统设计.

Published in:

Fly Ash Comprehensive Utilization, 2023, v. 37, n. 3, p. 106, doi. 10.19860/j.cnki.issn1005-8249.2023.01.017

By:

雷雨;
张璐

Publication type:

Article

Smart e‐bike monitoring system: real‐time open source and open hardware GPS assistance and sensor data for electrically‐assisted bicycles.

Published in:

IET Intelligent Transport Systems (Wiley-Blackwell), 2016, v. 10, n. 2, p. 79, doi. 10.1049/iet-its.2014.0251

By:

Kiefer, Chris;
Behrendt, Frauke

Publication type:

Article

A New (Related‐Key) Neural Distinguisher Using Two Differences for Differential Cryptanalysis.

Published in:

IET Information Security (Wiley-Blackwell), 2024, v. 2024, p. 1, doi. 10.1049/2024/4097586

By:

Wang, Gao;
Wang, Gaoli;
Sun, Siwei;
Wang, Qichun

Publication type:

Article

ANOVUL: Detection of logic vulnerabilities in annotated programs via data and control flow analysis.

Published in:

IET Information Security (Wiley-Blackwell), 2020, v. 14, n. 3, p. 352, doi. 10.1049/iet-ifs.2018.5615

By:

Ghorbanzadeh, Mahmoud;
Reza Shahriari, Hamid

Publication type:

Article

How to build a vulnerability benchmark to overcome cyber security attacks.

Published in:

IET Information Security (Wiley-Blackwell), 2020, v. 14, n. 1, p. 60, doi. 10.1049/iet-ifs.2018.5647

By:

Akram, Junaid;
Ping, Luo

Publication type:

Article