Works matching DE "SINGLE-stranded DNA"

Results: 1961

Visual-SELEX: A technology ensemble for evaluating aptamer structural similarity via 3D visual spatial conformational analysis.

Published in:

Journal of Bioinformatics & Computational Biology, 2025, v. 4, p. 1, doi. 10.1142/S0219720025500106

By:

Wang, Nijia

Publication type:

Article

Evaluation of ssDNA aptamer binding to Aurora Kinase A and its cytotoxic effects on HeLa and MCF-7 cancer cell lines.

Published in:

Tropical Journal of Pharmaceutical Research, 2025, v. 24, n. 7, p. 853, doi. 10.4314/tjpr.v24i7.1

By:

Woldekidan, Haregewoin Bezu;
Takundwa, Mutsa M.;
Raj, Deepak B. Thimiri Govinda;
Woldesemayat, Adugna Abdi

Publication type:

Article

THE GID COMPLEX REGULATES DNA END PROCESSING DURING DNA DOUBLE-STRAND BREAK REPAIR BY NONHOMOLOGOUS END JOINING.

Published in:

Transactions of the American Clinical & Climatological Association, 2025, n. 135, p. 281

By:

SLECKMAN, BARRY P.

Publication type:

Article

Srs2 binding to proliferating cell nuclear antigen (PCNA) and its sumoylation contribute to replication protein A (RPA) antagonism during the DNA damage response.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.98843

By:

Jiayi Fan;
Dhingra, Nalini;
Yang, Tammy;
Yang, Vicki;
Xiaolan Zhao

Publication type:

Article

Precise mapping of single-stranded DNA breaks by sequence-templated erroneous DNA polymerase end-labelling.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-62512-4

By:

Wenson, Leonie;
Heldin, Johan;
Martin, Marcel;
Erbilgin, Yücel;
Salman, Barış;
Sundqvist, Anders;
Schaal, Wesley;
Sandbaumhüter, Friederike A.;
Jansson, Erik T.;
Chen, Xingqi;
Davidsson, Anton;
Stenerlöw, Bo;
Espinoza, Jaime A.;
Lindström, Mikael;
Lennartsson, Johan;
Spjuth, Ola;
Söderberg, Ola

Publication type:

Article

GbTRB1 binds telomeric DNA in Ginkgo biloba.

Published in:

BMC Plant Biology, 2025, v. 25, n. 1, p. 1, doi. 10.1186/s12870-025-06668-7

By:

Sun, Yu;
Zhang, Huimin;
Zou, Yirong;
Guo, Xueqin;
Feng, Yuping;
Liu, Di;
Lu, Hai

Publication type:

Article

Mitochondrial RNase H1 activity regulates R-loop homeostasis to maintain genome integrity and enable early embryogenesis in Arabidopsis.

Published in:

PLoS Biology, 2021, v. 19, n. 8, p. 1, doi. 10.1371/journal.pbio.3001357

By:

Cheng, Lingling;
Wang, Wenjie;
Yao, Yao;
Sun, Qianwen

Publication type:

Article

Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq.

Published in:

PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3000886

By:

Kara, Neesha;
Krueger, Felix;
Rugg-Gunn, Peter;
Houseley, Jonathan

Publication type:

Article

The Ratio of ssDNA to dsDNA in Circulating Cell-Free DNA Extract is a Stable Indicator for Diagnosis of Gastric Cancer.

Published in:

Pathology & Oncology Research, 2020, v. 26, n. 4, p. 2621, doi. 10.1007/s12253-020-00869-1

By:

Huang, Xuewen;
Zhao, Qi;
An, Xianyuan;
Pan, Jie;
Zhao, Lanjing;
Shen, Lanfeng;
Xu, Yiqiu;
Yuan, Dandan

Publication type:

Article

Mutation and Expression of a Methyl-Binding Protein 6 (MBD6) in Gastric and Colorectal Cancers.

Published in:

2015

By:

Choi, Youn;
Yoo, Nam;
Lee, Sug

Publication type:

Letter

Frameshift Mutation of an Angiogenesis Factor VEGFB and its Mutational Heterogeneity in Colorectal Cancers.

Published in:

2015

By:

Choi, Mi;
Yoo, Nam;
Lee, Sug;
An, Chang

Publication type:

Letter

Research on the influence of APOBEC family on the occurrence, diagnosis, and treatment of various tumors.

Published in:

Journal of Cancer Research & Clinical Oncology, 2023, v. 149, n. 1, p. 357, doi. 10.1007/s00432-022-04395-2

By:

Yang, Jing;
Hou, Jiali;
Li, Mengxia

Publication type:

Article

Isolation and Characterization of a ssDNA Aptamer against Major Soluble Antigen of Renibacterium salmoninarum.

Published in:

Molecules, 2022, v. 27, n. 6, p. 1853, doi. 10.3390/molecules27061853

By:

Layman, Brady;
Mandella, Brian;
Carter, Jessica;
Breen, Haley;
Rinehart, John;
Cavinato, Anna

Publication type:

Article

Identification of New Regulators of Pancreatic Cancer Cell Sensitivity to Oxaliplatin and Cisplatin.

Published in:

Molecules, 2022, v. 27, n. 4, p. 1289, doi. 10.3390/molecules27041289

By:

Skripova, Vera;
Vlasenkova, Ramilia;
Zhou, Yan;
Astsaturov, Igor;
Kiyamova, Ramziya

Publication type:

Article

Selection and Characterization of Vimentin-Binding Aptamer Motifs for Ovarian Cancer.

Published in:

Molecules, 2021, v. 26, n. 21, p. 6525, doi. 10.3390/molecules26216525

By:

Costello, Andrea M.;
Elizondo-Riojas, Miguel-Angel;
Li, Xin;
Volk, David E.;
Pillai, Anil K.;
Wang, Hongyu

Publication type:

Article

Molecular Determinant of DIDS Analogs Targeting RAD51 Activity.

Published in:

Molecules, 2021, v. 26, n. 18, p. 5460, doi. 10.3390/molecules26185460

By:

Velic, Denis;
Demeyer, Alexandre;
Peterlini, Thibaut;
Benhelli-Mokrani, Houda;
Mathé-Allainmat, Monique;
Masson, Jean-Yves;
Fleury, Fabrice

Publication type:

Article

Attachment of Single-Stranded DNA to Certain SERS-Active Gold and Silver Substrates: Selected Practical Tips.

Published in:

Molecules, 2021, v. 26, n. 14, p. 4246, doi. 10.3390/molecules26144246

By:

Pyrak, Edyta;
Jędrzejewski, Kacper;
Szaniawska, Aleksandra;
Kudelski, Andrzej

Publication type:

Article

DNA-Templated Fluorescent Silver Nanoclusters Inhibit Bacterial Growth While Being Non-Toxic to Mammalian Cells.

Published in:

Molecules, 2021, v. 26, n. 13, p. 4045, doi. 10.3390/molecules26134045

By:

Rolband, Lewis;
Yourston, Liam;
Chandler, Morgan;
Beasock, Damian;
Danai, Leyla;
Kozlov, Seraphim;
Marshall, Nolan;
Shevchenko, Oleg;
Krasnoslobodtsev, Alexey V.;
Afonin, Kirill A.

Publication type:

Article

Electrochemical Resistive DNA Biosensor for the Detection of HPV Type 16.

Published in:

Molecules, 2021, v. 26, n. 11, p. 3436, doi. 10.3390/molecules26113436

By:

Espinosa, José R.;
Galván, Marisol;
Quiñones, Arturo S.;
Ayala, Jorge L.;
Ávila, Verónica;
Durón, Sergio M.

Publication type:

Article

Structural Landscape of the Transition from an ssDNA Dumbbell Plus Its Complementary Hairpin to a dsDNA Microcircle Via a Kissing Loop Intermediate.

Published in:

Molecules, 2021, v. 26, n. 10, p. 3017, doi. 10.3390/molecules26103017

By:

Mills, Alberto;
Gago, Federico;
Randazzo, Antonio

Publication type:

Article

A Label-Free Fluorometric Glutathione Assay Based on a Conformational Switch of G-quadruplex.

Published in:

Molecules, 2021, v. 26, n. 9, p. 2743, doi. 10.3390/molecules26092743

By:

Zhou, Xi;
Zhang, Doudou;
Yan, Ying;
He, Hailun;
Zhou, Yukui;
Ma, Changbei;
Wu, Zaisheng

Publication type:

Article

Development of Flow Cytometric Assay for Detecting Papillary Thyroid Carcinoma Related hsa-miR-146b-5p through Toehold-Mediated Strand Displacement Reaction on Magnetic Beads.

Published in:

Molecules, 2021, v. 26, n. 6, p. 1628, doi. 10.3390/molecules26061628

By:

Wu, Yue;
Gao, Jiaxue;
Wei, Jia;
Zhou, Jingjing;
Meng, Xianying;
Wang, Zhenxin;
Yavin, Eylon;
Cerchia, Laura

Publication type:

Article

DNA Manipulation and Single-Molecule Imaging.

Published in:

Molecules, 2021, v. 26, n. 4, p. 1050, doi. 10.3390/molecules26041050

By:

Takahashi, Shunsuke;
Oshige, Masahiko;
Katsura, Shinji;
Ruggeri, Francesco Simone;
Uversky, Vladimir N.

Publication type:

Article

Rare-Earth Metal Complexes of the Antibacterial Drug Oxolinic Acid: Synthesis, Characterization, DNA/Protein Binding and Cytotoxicity Studies.

Published in:

Molecules, 2020, v. 25, n. 22, p. 5418, doi. 10.3390/molecules25225418

By:

Maciuca, Ana-Madalina;
Munteanu, Alexandra-Cristina;
Mihaila, Mirela;
Badea, Mihaela;
Olar, Rodica;
Nitulescu, George Mihai;
Munteanu, Cristian V. A.;
Bostan, Marinela;
Uivarosi, Valentina;
Santini, Carlo;
Pellei, Maura

Publication type:

Article

Mechanism of Type IA Topoisomerases.

Published in:

Molecules, 2020, v. 25, n. 20, p. 4769, doi. 10.3390/molecules25204769

By:

Dasgupta, Tumpa;
Ferdous, Shomita;
Tse-Dinh, Yuk-Ching;
Klostermeier, Dagmar

Publication type:

Article

How Human H1 Histone Recognizes DNA.

Published in:

Molecules, 2020, v. 25, n. 19, p. 4556, doi. 10.3390/molecules25194556

By:

Luzhetskaya, Olesya P.;
Sedykh, Sergey E.;
Nevinsky, Georgy A.

Publication type:

Article

Inequality in the Frequency of the Open States Occurrence Depends on Single 2H/1H Replacement in DNA.

Published in:

Molecules, 2020, v. 25, n. 16, p. 3753, doi. 10.3390/molecules25163753

By:

Basov, Alexander;
Drobotenko, Mikhail;
Svidlov, Alexandr;
Gerasimenko, Eugeny;
Malyshko, Vadim;
Elkina, Anna;
Baryshev, Mikhail;
Dzhimak, Stepan;
González-Díaz, Humbert

Publication type:

Article

Synthesis of DNA Origami Scaffolds: Current and Emerging Strategies.

Published in:

Molecules, 2020, v. 25, n. 15, p. 3386, doi. 10.3390/molecules25153386

By:

Bush, Joshua;
Singh, Shrishti;
Vargas, Merlyn;
Oktay, Esra;
Hu, Chih-Hsiang;
Veneziano, Remi;
Afonin, Kirill A.

Publication type:

Article

Synthesis and Evaluation of Artificial Nucleic Acid Bearing an Oxanorbornane Scaffold.

Published in:

Molecules, 2020, v. 25, n. 7, p. 1732, doi. 10.3390/molecules25071732

By:

Komine, Hibiki;
Mori, Shohei;
Morihiro, Kunihiko;
Ishida, Kenta;
Okuda, Takumi;
Kasahara, Yuuya;
Aoyama, Hiroshi;
Yamaguchi, Takao;
Obika, Satoshi;
Hari, Yoshiyuki

Publication type:

Article

Photocrosslinking of cDNA Display Molecules with Their Target Proteins as a New Strategy for Peptide Selection.

Published in:

Molecules, 2020, v. 25, n. 6, p. 1472, doi. 10.3390/molecules25061472

By:

Terai, Takuya;
Koike, Tomoyuki;
Nemoto, Naoto;
Miyoshi, Daisuke;
Ojida, Akio;
Tabata, Kazuhito

Publication type:

Article

Unknown Areas of Activity of Human Ribonuclease Dicer: A Putative Deoxyribonuclease Activity.

Published in:

Molecules, 2020, v. 25, n. 6, p. 1414, doi. 10.3390/molecules25061414

By:

Wojnicka, Marta;
Szczepanska, Agnieszka;
Kurzynska-Kokorniak, Anna

Publication type:

Article

Development of RNA/DNA Hydrogel Targeting Toll-Like Receptor 7/8 for Sustained RNA Release and Potent Immune Activation.

Published in:

Molecules, 2020, v. 25, n. 3, p. 728, doi. 10.3390/molecules25030728

By:

Komura, Fusae;
Okuzumi, Kana;
Takahashi, Yuki;
Takakura, Yoshinobu;
Nishikawa, Makiya

Publication type:

Article

Redox-Active Monolayers Self-Assembled on Gold Electrodes—Effect of Their Structures on Electrochemical Parameters and DNA Sensing Ability.

Published in:

Molecules, 2020, v. 25, n. 3, p. 607, doi. 10.3390/molecules25030607

By:

Malecka, Kamila;
Menon, Shalini;
Palla, Gopal;
Kumar, Krishnapillai Girish;
Daniels, Mathias;
Dehaen, Wim;
Radecka, Hanna;
Radecki, Jerzy;
Marcaccio, Massimo

Publication type:

Article

PredPSD: A Gradient Tree Boosting Approach for Single-Stranded and Double-Stranded DNA Binding Protein Prediction.

Published in:

Molecules, 2020, v. 25, n. 1, p. 98, doi. 10.3390/molecules25010098

By:

Tan, Changgeng;
Wang, Tong;
Yang, Wenyi;
Deng, Lei

Publication type:

Article

Aptamers Chemistry: Chemical Modifications and Conjugation Strategies.

Published in:

Molecules, 2020, v. 25, n. 1, p. 3, doi. 10.3390/molecules25010003

By:

Odeh, Fadwa;
Nsairat, Hamdi;
Alshaer, Walhan;
Ismail, Mohammad A.;
Esawi, Ezaldeen;
Qaqish, Baraa;
Bawab, Abeer Al;
Ismail, Said I.;
Cerchia, Laura

Publication type:

Article

A Single-Turnover Kinetic Study of DNA Demethylation Catalyzed by Fe(II)/α-Ketoglutarate-Dependent Dioxygenase AlkB.

Published in:

Molecules, 2019, v. 24, n. 24, p. 4576, doi. 10.3390/molecules24244576

By:

Kanazhevskaya, Lyubov Yu.;
Alekseeva, Irina V.;
Fedorova, Olga S.;
Sousa, Sérgio F.

Publication type:

Article

SERS Studies of Adsorption on Gold Surfaces of Mononucleotides with Attached Hexanethiol Moiety: Comparison with Selected Single-Stranded Thiolated DNA Fragments.

Published in:

Molecules, 2019, v. 24, n. 21, p. 3921, doi. 10.3390/molecules24213921

By:

Pyrak, Edyta;
Jaworska, Aleksandra;
Kudelski, Andrzej;
Malek, Kamilla

Publication type:

Article

Selection and Identification of Novel Aptamers Specific for Clenbuterol Based on ssDNA Library Immobilized SELEX and Gold Nanoparticles Biosensor.

Published in:

Molecules, 2018, v. 23, n. 9, p. 2337, doi. 10.3390/molecules23092337

By:

Xixia Liu;
Qi Lu;
Sirui Chen;
Fang Wang;
Jianjun Hou;
Zhenlin Xu;
Chen Meng;
Tianyuan Hu;
Yaoyao Hou

Publication type:

Article

Graphene and Graphene-Based Nanomaterials for DNA Detection: A Review.

Published in:

Molecules, 2018, v. 23, n. 8, p. 2050, doi. 10.3390/molecules23082050

By:

Wu, Xin;
Zhao, Haiyan;
Mu, Fengwen;
Wang, Yinghui

Publication type:

Article

Generation and Applications of a DNA Aptamer against Gremlin-1.

Published in:

Molecules, 2017, v. 22, n. 5, p. 706, doi. 10.3390/molecules22050706

By:

Qian Li;
Yongwei Huo;
Yonghong Guo;
Xiaoyan Zheng;
Wengang Sun;
Zhiming Hao

Publication type:

Article

VPF-Class: taxonomic assignment and host prediction of uncultivated viruses based on viral protein families.

Published in:

Bioinformatics, 2021, v. 37, n. 13, p. 1805, doi. 10.1093/bioinformatics/btab026

By:

Pons, Joan Carles;
Paez-Espino, David;
Riera, Gabriel;
Ivanova, Natalia;
Kyrpides, Nikos C;
Llabrés, Mercè

Publication type:

Article

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 4, p. 1260, doi. 10.1093/bioinformatics/btz681

By:

Porubsky, David;
Sanders, Ashley D;
Taudt, Aaron;
Colomé-Tatché, Maria;
Lansdorp, Peter M;
Guryev, Victor

Publication type:

Article

Nanocomposite of electrochemically reduced graphene oxide and gold nanourchins for electrochemical DNA detection.

Published in:

IET Nanobiotechnology (Wiley-Blackwell), 2022, v. 16, n. 5, p. 190, doi. 10.1049/nbt2.12086

By:

Azimzadeh, Mostafa;
Aghili, Zahra;
Jannat, Behrooz;
Jafari, Saeid;
Rafizadeh Tafti, Saeed;
Nasirizadeh, Navid

Publication type:

Article

Nucleic acid detection strategy using gold nanoprobe of two diverse origin.

Published in:

IET Nanobiotechnology (Wiley-Blackwell), 2019, v. 13, n. 9, p. 928, doi. 10.1049/iet-nbt.2018.5332

By:

Vinayagam, Saranya;
Rajaiah, Paramasivan;
Mukerjee, Amitava;
Natarajan, Chandrasekaran

Publication type:

Article

Repurposing Type I-A CRISPR-Cas3 for a robust diagnosis of human papillomavirus (HPV).

Published in:

Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06537-3

By:

Hu, Tao;
Ji, Quanquan;
Ke, Xinxin;
Zhou, Hufeng;
Zhang, Senfeng;
Ma, Shengsheng;
Yu, Chenlin;
Ju, Wenjun;
Lu, Meiling;
Lin, Yu;
Ou, Yangjing;
Zhou, Yingsi;
Xiao, Yibei;
Xu, Chunlong;
Hu, Chunyi

Publication type:

Article

Novel WYL domain-containing transcriptional activator acts in response to genotoxic stress in rapidly growing mycobacteria.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05592-6

By:

Keller, Lena Maria Leone;
Flattich, Kim;
Weber-Ban, Eilika

Publication type:

Article

An array-based melt curve analysis method for the identification and classification of closely related pathogen strains.

Published in:

Biology Methods & Protocols, 2018, p. 1, doi. 10.1093/biomethods/bpy005

By:

Hassibi, Arjang;
Ebert, Jessica;
Bolouki, Sara;
Anemogiannis, Alexander;
Mazarei, Gelareh;
Li, Yuan;
Johnson, Kirsten A;
Van, Tran;
Mantina, Pallavi;
Gharooni, Taraneh;
Jirage, Kshama;
Pei, Lei;
Sinha, Ruma;
Manickam, Arun;
Zia, Amin;
Naraghi-Arani, Pejman;
Schoolnik, Gary;
Kuimelis, Robert G

Publication type:

Article

Computational Methods to Study DNA:DNA:RNA Triplex Formation by lncRNAs.

Published in:

Non-Coding RNA, 2023, v. 9, n. 1, p. 10, doi. 10.3390/ncrna9010010

By:

Warwick, Timothy;
Brandes, Ralf P.;
Leisegang, Matthias S.

Publication type:

Article

Photo‐Cross‐linked DNA Structures Greatly Improves Their Serum Nuclease Resistances and Gene Knock‐In Efficiencies.

Published in:

Small Methods, 2025, v. 9, n. 5, p. 1, doi. 10.1002/smtd.202401346

By:

Li, Zhigang;
Ma, Youwei;
Li, Chengxu;
Xiao, Shiyan;
Liang, Haojun

Publication type:

Article

LiveG4ID‐Seq for Profiling the Dynamic Landscape of Chromatin G‐Quadruplexes During Cell Cycle in Living Cells.

Published in:

Small Methods, 2023, v. 7, n. 4, p. 1, doi. 10.1002/smtd.202201487

By:

Teng, Xucong;
Dai, Yicong;
Li, Ke;
Wu, Yuncong;
Hou, Hongwei;
Li, Jinghong

Publication type:

Article