Works matching DE "SIGNAL recognition particle receptor"

Results: 390

Antioxidant potential of hydrolyzed proteins from Thai rice varieties and docking studies of novel peptides with free radicals.

Published in:

AIMS Agriculture & Food, 2025, v. 10, n. 2, p. 1, doi. 10.3934/agrfood.2025019

By:

Khammuang, Saranyu;
Sanachai, Kamonpan;
Kittika, Methus;
Lirdprapamongkol, Kriengsak;
Svasti, Jisnuson;
Sarnthima, Rakrudee

Publication type:

Article

Protein targeting to the ER membrane: multiple pathways and shared machinery.

Published in:

Critical Reviews in Biochemistry & Molecular Biology, 2025, v. 60, n. 1-3, p. 33, doi. 10.1080/10409238.2025.2503746

By:

Sánchez, Wendy N.;
Driessen, Arnold J.M.;
Wilson, Christian A.M.

Publication type:

Article

Comprehensive molecular docking on the AlphaFold-predicted protein structure proteome: identifying target protein candidates for puberulic acid.

Published in:

Journal of Toxicological Sciences, 2025, v. 50, n. 7, p. 309, doi. 10.2131/jts.50.309

By:

Teppei Hayama;
Rin Sugawara;
Ryo Kamata;
Masakazu Sekijima;
Kazuki Takeda

Publication type:

Article

Network Pharmacology Combined with Bioinformatics Analysis to Texplore the Potential Mechanism of Phellodendri Chinensis Cortex Against Bladder Cancer.

Published in:

Cell Biochemistry & Biophysics, 2024, v. 82, n. 4, p. 3317, doi. 10.1007/s12013-024-01414-6

By:

Hu, Lili;
Wu, Na;
Wang, Jue;
Yao, Mingze;
Han, Bo

Publication type:

Article

Posttranslational insertion of small membrane proteins by the bacterial signal recognition particle.

Published in:

PLoS Biology, 2020, v. 18, n. 9, p. 1, doi. 10.1371/journal.pbio.3000874

By:

Steinberg, Ruth;
Origi, Andrea;
Natriashvili, Ana;
Sarmah, Pinku;
Licheva, Mariya;
Walker, Princess M.;
Kraft, Claudine;
High, Stephen;
Luirink, Joen;
Shi, Wei. Q.;
Helmstädter, Martin;
Ulbrich, Maximilian H.;
Koch, Hans-Georg

Publication type:

Article

Extracting prime protein targets as possible drug candidates: machine learning evaluation.

Published in:

Medical & Biological Engineering & Computing, 2023, v. 61, n. 11, p. 3035, doi. 10.1007/s11517-023-02893-0

By:

Chattopadhyay, Subhagata;
Do, Nhat Phuong;
Flower, Darren R.;
Chattopadhyay, Amit K.

Publication type:

Article

Quantitative Proteomics and Differential Protein Abundance Analysis after Depletion of Putative mRNA Receptors in the ER Membrane of Human Cells Identifies Novel Aspects of mRNA Targeting to the ER.

Published in:

Molecules, 2021, v. 26, n. 12, p. 3591, doi. 10.3390/molecules26123591

By:

Bhadra, Pratiti;
Schorr, Stefan;
Lerner, Monika;
Nguyen, Duy;
Dudek, Johanna;
Förster, Friedrich;
Helms, Volkhard;
Lang, Sven;
Zimmermann, Richard

Publication type:

Article

Exploring Aurone Derivatives as Potential Human Pancreatic Lipase Inhibitors through Molecular Docking and Molecular Dynamics Simulations.

Published in:

Molecules, 2020, v. 25, n. 20, p. 4657, doi. 10.3390/molecules25204657

By:

Nguyen, Phuong Thuy Viet;
Huynh, Han Ai;
Truong, Dat Van;
Tran, Thanh-Dao;
Vo, Cam-Van Thi

Publication type:

Article

In Silico, Ex Vivo and In Vivo Studies of Roflumilast as a Potential Antidiarrheal and Antispasmodic agent: Inhibition of the PDE-4 Enzyme and Voltage-gated Ca++ ion Channels.

Published in:

Molecules, 2020, v. 25, n. 4, p. 1008, doi. 10.3390/molecules25041008

By:

Rehman, Najeeb Ur;
Ansari, Mohd Nazam;
Samad, Abdul

Publication type:

Article

In Silico Molecular Studies of Antiophidic Properties of the Amazonian Tree Cordia nodosa Lam.

Published in:

Molecules, 2019, v. 24, n. 22, p. 4160, doi. 10.3390/molecules24224160

By:

Luzuriaga-Quichimbo, Carmen X.;
Blanco-Salas, José;
Muñoz-Centeno, Luz María;
Peláez, Rafael;
Cerón-Martínez, Carlos E.;
Ruiz-Téllez, Trinidad;
Coy-Barrera, Ericsson

Publication type:

Article

Local Interaction Density (LID), a Fast and Efficient Tool to Prioritize Docking Poses.

Published in:

Molecules, 2019, v. 24, n. 14, p. 2610, doi. 10.3390/molecules24142610

By:

Jacquemard, Célien;
Tran-Nguyen, Viet-Khoa;
Drwal, Malgorzata N.;
Rognan, Didier;
Kellenberger, Esther;
Horvath, Dragos

Publication type:

Article

Hypoglycemic Efficacy of Docking Selected Natural Compounds against α-Glucosidase and α-Amylase.

Published in:

Molecules, 2018, v. 23, n. 9, p. 2260, doi. 10.3390/molecules23092260

By:

Jirawat Riyaphan;
Chien-Hung Jhong;
Shian-Ren Lin;
Chia-Hsiang Chang;
May-Jwan Tsai;
Der-Nan Lee;
Ping-Jyun Sung;
Leong, Max K.;
Ching-Feng Weng

Publication type:

Article

Predicting Protein-Protein Interactions Using BiGGER: Case Studies.

Published in:

2016

By:

Almeida, Rui M.;
Dell'Acqua, Simone;
Krippahl, Ludwig;
Moura, José J. G.;
Pauleta, Sofia R.

Publication type:

Case Study

Molecular Oxygen Migration in Isolated β-Chains of Human Hemoglobin as Revealed by Molecular Dynamics Simulations and Laser Kinetic Spectroscopy.

Published in:

Journal of Applied Spectroscopy, 2023, v. 90, n. 3, p. 485, doi. 10.1007/s10812-023-01557-z

By:

Lepeshkevich, S. V.;
Parkhats, M. V.;
Biziuk, S. A.;
Lemeza, A. M.;
Gilevich, S. N.;
Dzhagarov, B. M.

Publication type:

Article

Deep Local Analysis evaluates protein docking conformations with locally oriented cubes.

Published in:

Bioinformatics, 2022, v. 38, n. 19, p. 4505, doi. 10.1093/bioinformatics/btac551

By:

Behbahani, Yasser Mohseni;
Crouzet, Simon;
Laine, Elodie;
Carbone, Alessandra

Publication type:

Article

TRScore: a 3D RepVGG-based scoring method for ranking protein docking models.

Published in:

Bioinformatics, 2022, v. 38, n. 9, p. 2444, doi. 10.1093/bioinformatics/btac120

By:

Guo, Linyuan;
He, Jiahua;
Lin, Peicong;
Huang, Sheng-You;
Wang, Jianxin

Publication type:

Article

ATPdock: a template-based method for ATP-specific protein–ligand docking.

Published in:

Bioinformatics, 2022, v. 38, n. 2, p. 556, doi. 10.1093/bioinformatics/btab667

By:

Rao, Liang;
Jia, Ning-Xin;
Hu, Jun;
Yu, Dong-Jun;
Zhang, Gui-Jun

Publication type:

Article

pyconsFold: a fast and easy tool for modeling and docking using distance predictions.

Published in:

Bioinformatics, 2021, v. 37, n. 21, p. 3959, doi. 10.1093/bioinformatics/btab353

By:

Lamb, J;
Elofsson, A

Publication type:

Article

Text mining for modeling of protein complexes enhanced by machine learning.

Published in:

Bioinformatics, 2021, v. 37, n. 4, p. 497, doi. 10.1093/bioinformatics/btaa823

By:

Badal, Varsha D;
Kundrotas, Petras J;
Vakser, Ilya A

Publication type:

Article

PLIDflow: an open-source workflow for the online analysis of protein–ligand docking using galaxy.

Published in:

Bioinformatics, 2020, v. 36, n. 14, p. 4203, doi. 10.1093/bioinformatics/btaa481

By:

Ulzurrun, Eugenia;
Duarte, Yorley;
Perez-Wohlfeil, Esteban;
Gonzalez-Nilo, Fernando;
Trelles, Oswaldo

Publication type:

Article

A knowledge-based scoring function to assess quaternary associations of proteins.

Published in:

Bioinformatics, 2020, v. 36, n. 12, p. 3739, doi. 10.1093/bioinformatics/btaa207

By:

Dhawanjewar, Abhilesh S;
Roy, Ankit A;
Madhusudhan, Mallur S

Publication type:

Article

Protein docking model evaluation by 3D deep convolutional neural networks.

Published in:

Bioinformatics, 2020, v. 36, n. 7, p. 2113, doi. 10.1093/bioinformatics/btz870

By:

Wang, Xiao;
Terashi, Genki;
Christoffer, Charles W;
Zhu, Mengmeng;
Kihara, Daisuke

Publication type:

Article

LightDock goes information-driven.

Published in:

Bioinformatics, 2020, v. 36, n. 3, p. 950, doi. 10.1093/bioinformatics/btz642

By:

Roel-Touris, Jorge;
Bonvin, Alexandre M J J;
Jiménez-García, Brian

Publication type:

Article

P3DOCK: a protein–RNA docking webserver based on template-based and template-free docking.

Published in:

Bioinformatics, 2020, v. 36, n. 1, p. 96, doi. 10.1093/bioinformatics/btz478

By:

Zheng, Jinfang;
Hong, Xu;
Xie, Juan;
Tong, Xiaoxue;
Liu, Shiyong

Publication type:

Article

EROS-DOCK: protein–protein docking using exhaustive branch-and-bound rotational search.

Published in:

Bioinformatics, 2019, v. 35, n. 23, p. 5003, doi. 10.1093/bioinformatics/btz434

By:

Echartea, Maria Elisa Ruiz;
Beauchêne, Isaure Chauvot de;
Ritchie, David W

Publication type:

Article

KORP: knowledge-based 6D potential for fast protein and loop modeling.

Published in:

Bioinformatics, 2019, v. 35, n. 17, p. 3013, doi. 10.1093/bioinformatics/btz026

By:

López-Blanco, José Ramón;
Chacón, Pablo

Publication type:

Article

ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.

Published in:

Bioinformatics, 2017, v. 33, n. 20, p. 3299, doi. 10.1093/bioinformatics/btx216

By:

Porter, Kathryn A.;
Bing Xia;
Beglov, Dmitri;
Bohnuud, Tanggis;
Alam, Nawsad;
Schueler-Furman, Ora;
Kozakov, Dima

Publication type:

Article

JADOPPT: java based AutoDock preparing and processing tool.

Published in:

Bioinformatics, 2017, v. 33, n. 4, p. 583, doi. 10.1093/bioinformatics/btw677

By:

García-Pérez, Carlos;
Peláez, Rafael;
Therón, Roberto;
López-Pérez, José Luis

Publication type:

Article

Accounting for pairwise distance restraints in FFT-based protein--protein docking.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3342, doi. 10.1093/bioinformatics/btw306

By:

Bing Xia;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i693, doi. 10.1093/bioinformatics/btw443

By:

Neveu, Emilie;
Ritchie, David W.;
Popov, Petr;
Grudinin, Sergei

Publication type:

Article

NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3856, doi. 10.1093/bioinformatics/btv458

By:

Gaudreault, Francis;
Morency, Louis-Philippe;
Najmanovich, Rafael J.

Publication type:

Article

MEGADOCK 4.0: an ultra–high-performance protein–protein docking software for heterogeneous supercomputers.

Published in:

Bioinformatics, 2014, v. 30, n. 22, p. 3281

By:

Matsuzaki, Yuri;
Ishida, Takashi;
Ohue, Masahito;
Shimoda, Takehiro;
Akiyama, Yutaka;
Suzuki, Shuji

Publication type:

Article

Specificity and affinity quantification of protein–protein interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1127, doi. 10.1093/bioinformatics/btt121

By:

Yan, Zhiqiang;
Guo, Liyong;
Hu, Liang;
Wang, Jin

Publication type:

Article

In silico Homology Modeling of Five Aspergillus oryzae Extracellular Proteins and Docking with Silver Nanoparticles.

Published in:

Egyptian Journal of Microbiology, 2022, v. 57, n. 1, p. 75, doi. 10.21608/EJM.2023.176267.1220

By:

AbdelHamid, Huda;
Obiedallah, Marwa

Publication type:

Article

Missense mutations involvement in COX-2 structure, and protein-substrate binding affinity: in-silico study.

Published in:

Nucleosides, Nucleotides & Nucleic Acids, 2021, v. 40, n. 12, p. 1125, doi. 10.1080/15257770.2021.1983826

By:

Zahedi, Tahereh;
Colagar, Abasalt Hosseinzadeh;
Mahmoodzadeh, Habibollah;
Raoof, Jahan-Bakhsh

Publication type:

Article

Modeling of Aqueous Root Extract Compounds of Ruellia tuberosa L. for Alpha-Glucosidase Inhibition Through in Silico Study.

Published in:

Makara Journal of Science, 2021, v. 25, n. 1, p. 51, doi. 10.7454/mss.v25i1.1223

By:

Anna Safitri;
Dewi Ratih Tirto Sari;
Fatchiyah Fatchiyah;
Anna Roosdiana

Publication type:

Article

Investigating Novel IspE Inhibitors of the MEP Pathway in Mycobacterium.

Published in:

Microorganisms, 2024, v. 12, n. 1, p. 18, doi. 10.3390/microorganisms12010018

By:

Choi, Seoung-Ryoung;
Narayanasamy, Prabagaran

Publication type:

Article

Identification of gene signatures associated with lactation for predicting prognosis and treatment response in breast cancer patients through machine learning.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-98255-x

By:

Zhao, Jinfeng;
Li, Longpeng;
Wang, Yaxin;
Huo, Jiayu;
Wang, Jirui;
Xue, Huiwen;
Cai, Yue

Publication type:

Article

Molecular dynamics reveal potential effects of novel VHL variants on VHL-Elongin C binding in ccRCC patients from Eastern India.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-95875-1

By:

Chatterjee, Srilagna;
Paul, Nirvika;
Das, Anwesha;
Bank, Sarbashri;
Bankura, Biswabandhu;
Yadav, Ravi Prakash;
Sarkar, Kunal;
Saha, Soumen;
Malakar, Subhajit;
Choudhury, Sunirmal;
Ghosh, Sudakshina;
Das, Madhusudan

Publication type:

Article

Potential functional changes in native lysozyme induced by carbon nanotubes studied by molecular dynamics simulations.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-025-96435-3

By:

Vaez Allaei, S. Mehdi;
Amininasab, Mehriar;
Ishkhanyan, Hrachya;
Poghosyan, Armen H.

Publication type:

Article

In-Vitro, In-Vivo, Molecular Docking and ADMET Studies of 2-Substituted 3,7-Dihydroxy-4H-chromen-4-one for Oxidative Stress, Inflammation and Alzheimer's Disease.

Published in:

Metabolites (2218-1989), 2022, v. 12, n. 11, p. 1055, doi. 10.3390/metabo12111055

By:

Mahnashi, Mater H.;
Alshahrani, Mohammed Abdulrahman;
Nahari, Mohammed H.;
Hassan, Syed Shams ul;
Jan, Muhammad Saeed;
Ayaz, Muhammad;
Ullah, Farhat;
Alshehri, Osama M.;
Alshehri, Mohammad Ali;
Rashid, Umer;
Sadiq, Abdul

Publication type:

Article

Computational Screening of the Natural Product Osthole and Its Derivates for Anti-Inflammatory Activity.

Published in:

Life (2075-1729), 2022, v. 12, n. 4, p. N.PAG, doi. 10.3390/life12040505

By:

Mosebarger, Angela;
Reddi, Rambabu N.;
Menon, Ramkumar;
Kammala, Ananth Kumar

Publication type:

Article

A disintegrin and metalloproteinase domain 10 expression inhibition by the small molecules adenosine, cordycepin and N6, N6-dimethyladenosine and immune regulation in malignant cancers.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1434027

By:

Zhang, Wenqian;
Fu, Jiewen;
Du, Jiaman;
Liu, Xiaoyan;
Cheng, Jingliang;
Wei, Chunli;
Xu, Youhua;
Fu, Junjiang

Publication type:

Article

A disintegrin and metalloproteinase domain 10 expression inhibition by the small molecules adenosine, cordycepin and N6, N6- dimethyladenosine and immune regulation in malignant cancers.

Published in:

Frontiers in Immunology, 2024, p. 1, doi. 10.3389/fimmu.2024.1434027

By:

Wenqian Zhang;
Jiewen Fu;
Jiaman Du;
Xiaoyan Liu;
Jingliang Cheng;
Chunli Wei;
Youhua Xu;
Junjiang Fu

Publication type:

Article

Tert-butylhydroquinone prevents cyclophosphamide induce lung toxicity in rats via inhibiting oxidative stress and apoptosis: in vivo and in silico study.

Published in:

Egyptian Journal of Forensic Sciences, 2024, v. 14, n. 1, p. 1, doi. 10.1186/s41935-024-00395-0

By:

Ibrahim, Mahrous A.;
Elsharawy, Ayman Fathi;
Baraka, Waleed E. Abo;
Khalifa, Athar M.;
E Abdalla, Metwally;
Nafie, Mohamed S.;
Shehata, Shaimaa A.;
Bakhaat, Gamal Abdelrahman

Publication type:

Article

Mutational Study of Voltage-Gated Sodium Channel in Permethrin Resistance in Mosquitoes: An in silico Study.

Published in:

International Journal of Pharmaceutical Investigation, 2024, v. 14, n. 3, p. 768, doi. 10.5530/ijpi.14.3.86

By:

Patgiri, Parag;
Goyary, Biru;
Roy, Mritunjoy Kumar;
Swargiary, Ananta;
Brahma, Nisha Rani;
Brahma, Bihung

Publication type:

Article

Alzheimer's disease-associated inflammatory pathways might contribute to osteoporosis through the interaction between PROK2 and CSF3.

Published in:

Frontiers in Neurology, 2022, v. 13, p. 1, doi. 10.3389/fneur.2022.990779

By:

Wenzheng Zhang;
Ya Zhang;
Naixia Hu;
Anying Wang

Publication type:

Article

In silico Drug Repurposing for COVID‐19: Targeting SARS‐CoV‐2 Proteins through Docking and Consensus Ranking.

Published in:

Molecular Informatics, 2021, v. 40, n. 1, p. 1, doi. 10.1002/minf.202000115

By:

Cavasotto, Claudio N.;
Di Filippo, Juan I.

Publication type:

Article

ALADDIN: Docking Approach Augmented by Machine Learning for Protein Structure Selection Yields Superior Virtual Screening Performance.

Published in:

Molecular Informatics, 2020, v. 39, n. 4, p. 1, doi. 10.1002/minf.201900103

By:

Fan, Ningning;
Bauer, Christoph A.;
Stork, Conrad;
Bruyn Kops, Christina;
Kirchmair, Johannes

Publication type:

Article

Evidence from a Comprehensive Bioinformatics Analysis Point to Possible Therapeutic Targets for Vitiligo.

Published in:

Clinical, Cosmetic & Investigational Dermatology, 2025, v. 18, p. 1281, doi. 10.2147/CCID.S523231

By:

Wang, Yingwei;
Yao, Tao;
Lin, Yunlu;
Wu, Jianming

Publication type:

Article