Works about SHOTGUN sequencing
Results: 1668
Shotgun and Hi-C Sequencing Datasets for Binning Wheat Rhizosphere Microbiome.
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- Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04651-3
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- Article
Metagenomic Insights into Microbial Signatures in Thrombi from Acute Ischemic Stroke Patients Undergoing Endovascular Treatment.
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- Brain Sciences (2076-3425), 2025, v. 15, n. 2, p. 157, doi. 10.3390/brainsci15020157
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- Article
Effects of Environmental Chemical Pollutants on Microbiome Diversity: Insights from Shotgun Metagenomics.
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- Toxics, 2025, v. 13, n. 2, p. 142, doi. 10.3390/toxics13020142
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- Article
Alterations in the gut microbiome in patients with esophageal carcinoma in response to esophagectomy and neoadjuvant treatment.
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- Surgery Today, 2023, v. 53, n. 6, p. 663, doi. 10.1007/s00595-022-02607-3
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- Article
Transcriptome sequencing analysis of primary fibroblasts: a new insight into postoperative abdominal adhesion.
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- Surgery Today, 2022, v. 52, n. 1, p. 151, doi. 10.1007/s00595-021-02321-6
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- Article
Metagenomic sequencing determines complete infectious bronchitis virus (avian Gammacoronavirus) vaccine strain genomes and associated viromes in chicken clinical samples.
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- Virus Genes, 2021, v. 57, n. 6, p. 529, doi. 10.1007/s11262-021-01872-7
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- Article
Identification of a distinct lineage of aviadenovirus from crane feces.
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- Virus Genes, 2019, v. 55, n. 6, p. 815, doi. 10.1007/s11262-019-01703-w
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Human cytomegalovirus genomics and transcriptomics through the lens of next-generation sequencing: revision and future challenges.
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- Virus Genes, 2019, v. 55, n. 2, p. 138, doi. 10.1007/s11262-018-1627-3
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- Article
Detection by next generation sequencing of a multi-segmented viral genome from sugarcane associated with Ramu stunt disease.
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- Virus Genes, 2016, v. 52, n. 1, p. 152, doi. 10.1007/s11262-015-1279-5
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- Article
Comprehensive analysis of PEGylated liposome-associated proteins relating to the accelerated blood clearance phenomenon by combination with shotgun analysis and conventional methods.
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- Biotechnology & Applied Biochemistry, 2015, v. 62, n. 4, p. 547, doi. 10.1002/bab.1291
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- Article
First insight into the whole genome shotgun sequence of the endangered noble pen shell Pinna nobilis: a giant bivalve undergoing a mass mortality event.
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- Journal of Molluscan Studies, 2021, v. 87, n. 1, p. 1, doi. 10.1093/mollus/eyaa041
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- Article
Characterization of microbial communities in ethanol biorefineries.
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- Journal of Industrial Microbiology & Biotechnology, 2020, v. 47, n. 2, p. 183, doi. 10.1007/s10295-019-02254-7
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- Article
Effect of temperature on methane oxidation and community composition in landfill cover soil.
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- Journal of Industrial Microbiology & Biotechnology, 2019, v. 46, n. 9/10, p. 1283, doi. 10.1007/s10295-019-02217-y
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- Article
The complete mitochondrial DNA of the carnivorous sponge Lycopodina hypogea is putatively complemented by microDNAs.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.18255
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- Article
The role of microbiomes in cooperative detoxification mechanisms of arsenate reduction and arsenic methylation in surface agricultural soil.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.18383
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- Article
Identification of non-model mammal species using the MinION DNA sequencer from Oxford Nanopore.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.17887
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Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities.
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- PeerJ, 2024, p. 1, doi. 10.7717/peerj.16770
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- Article
Benchmarking long-read genome sequence alignment tools for human genomics applications.
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- PeerJ, 2023, p. 1, doi. 10.7717/peerj.16515
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- Article
Comparative analysis of shotgun metagenomics and 16S rDNA sequencing of gut microbiota in migratory seagulls.
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- PeerJ, 2023, p. 1, doi. 10.7717/peerj.16394
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- Article
Unraveling the functional genes present in rhizosphere microbiomes of Solanum lycopersicum.
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- PeerJ, 2023, p. 1, doi. 10.7717/peerj.15432
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- Article
Mitochondrial genomes assembled from non-invasive eDNA metagenomic scat samples in the endangered Amur tiger Panthera tigris altaica.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.14428
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- Article
Genome resequencing clarifies phylogeny and reveals patterns of selection in the toxicogenomics model Pimephales promelas.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13954
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- Article
Be aware of the allele-specific bias and compositional effects in multi-template PCR.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13888
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- Article
Skimming for barcodes: rapid production of mitochondrial genome and nuclear ribosomal repeat reference markers through shallow shotgun sequencing.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13790
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- Article
Taxonomic and functional alterations in the salivary microbiota of children with and without severe early childhood caries (S-ECC) at the age of 3.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13529
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- Article
NanoForms: an integrated server for processing, analysis and assembly of raw sequencing data of microbial genomes, from Oxford Nanopore technology.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.13056
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- Article
Identification of key microorganisms in facultative stabilization ponds from dairy industries, using metagenomics.
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- PeerJ, 2022, p. 1, doi. 10.7717/peerj.12772
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- Article
Comparative hologenomics of two Ixodes scapularis tick populations in New Jersey.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.12313
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- Article
Struo2: efficient metagenome profiling database construction for ever-expanding microbial genome datasets.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.12198
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- Article
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11721
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Identification of pathogen(s) in infectious diseases using shotgun metagenomic sequencing and conventional culture: a comparative study.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11699
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- Article
Heterogeneity of gut microbial responses in healthy household dogs transitioning from an extruded to a mildly cooked diet.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11648
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Response of Escherichia coli minimal ter operon to UVC and auto-aggregation: pilot study.
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- PeerJ, 2021, p. 1, doi. 10.7717/peerj.11197
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- Article
Recalibration of mapping quality scores in Illumina short-read alignments improves SNP detection results in low-coverage sequencing data.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.10501
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Meta-SourceTracker: application of Bayesian source tracking to shotgun metagenomics.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8783
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Mitochondrial genomes of Columbicola feather lice are highly fragmented, indicating repeated evolution of minicircle-type genomes in parasitic lice.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8759
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- Article
Genome sequencing of Aspergillus glaucus 'CCHA' provides insights into salt-stress adaptation.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8609
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Improving sustainable use of genetic resources in biodiversity archives.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8369
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Characterization of the complete mitochondrial genome sequences of three Merulinidae corals and novel insights into the phylogenetics.
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- PeerJ, 2020, p. 1, doi. 10.7717/peerj.8455
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- Article
Characteristics of the complete mitochondrial genome of the monotypic genus Arctictis (Family: Viverridae) and its phylogenetic implications.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.8033
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Optimizing de novo genome assembly from PCR-amplified metagenomes.
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- PeerJ, 2019, p. 1, doi. 10.7717/peerj.6902
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- Article
Fine-scale differentiation between Bacillus anthracis and Bacillus cereus group signatures in metagenome shotgun data.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.5515
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- Article
The mitochondrial genomes of two walnut pests, Gastrolina depressa depressa and G. depressa thoracica (Coleoptera: Chrysomelidae), and phylogenetic analyses.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.4919
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- Article
Squeezing water from a stone: high- throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards.
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- PeerJ, 2018, p. 1, doi. 10.7717/peerj.4470
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- Article
Expression and characterization of a novel cold-adapted lipase from psychrotolerant bacteria Psychrobacter sp. S1B.
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- Malaysian Journal of Microbiology, 2020, v. 16, n. 2, p. 79, doi. 10.21161/mjm.180177
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- Article
Metagenome-assembled microbial genomes (n = 3,448) of the oral microbiomes of Tibetan and Duroc pigs.
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- Scientific Data, 2025, v. 12, n. 1, p. 1, doi. 10.1038/s41597-025-04413-1
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- Article
Microbial profiling of the East Siberian Sea sediments using 16S rRNA gene and metagenome sequencing.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-04177-0
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- Article
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities.
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- Scientific Data, 2024, v. 11, n. 1, p. 1, doi. 10.1038/s41597-024-03672-8
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- Article
Genetic Diversity, Geographical Structure, and Demographic History of the Kashmir Gray Langur (Semnopithecus ajax): Population Genetics of Kashmir Gray Langur: S. Hameed et al.
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- International Journal of Primatology, 2025, v. 46, n. 1, p. 122, doi. 10.1007/s10764-024-00455-1
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- Article
Overcoming Challenges to Extracting and Sequencing Historical DNA to Support Primate Evolutionary Research and Conservation, with an Application to Galagos: Overcoming Challenges to Extracting and Sequencing Historical DNA to Support Primate Evolutionary Research and Conservation, with an Application to Galagos: A. Penna et al
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- International Journal of Primatology, 2024, v. 45, n. 6, p. 1375, doi. 10.1007/s10764-024-00429-3
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- Article